Wall clock time and date at job start Tue Mar 31 2020 10:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30411 * 125.97457 * 2 1 4 4 N 1.39928 * 108.95752 * 180.26934 * 3 2 1 5 5 C 1.46504 * 125.75177 * 179.71652 * 4 3 2 6 6 C 1.34340 * 108.50082 * 359.70937 * 4 3 2 7 7 Cl 1.73602 * 126.31926 * 179.97438 * 6 4 3 8 8 C 1.38279 * 107.36564 * 0.02562 * 6 4 3 9 9 C 1.47290 * 126.43939 * 179.97438 * 8 6 4 10 10 O 1.21620 * 120.00083 * 90.01845 * 9 8 6 11 11 N 1.34781 * 120.00263 * 270.02613 * 9 8 6 12 12 C 1.46497 * 119.99981 * 180.27866 * 11 9 8 13 13 H 1.08999 * 109.47535 * 34.71949 * 12 11 9 14 14 C 1.53001 * 109.46755 * 274.71548 * 12 11 9 15 15 C 1.52999 * 109.47037 * 154.72268 * 12 11 9 16 16 N 1.46504 * 109.47015 * 304.99634 * 15 12 11 17 17 C 1.46502 * 119.99658 * 269.99832 * 16 15 12 18 18 C 1.36930 * 119.99975 * 90.00189 * 16 15 12 19 19 H 1.07997 * 120.00709 * 19.41108 * 18 16 15 20 20 C 1.38818 * 119.99854 * 199.41632 * 18 16 15 21 21 N 1.31620 * 120.00027 * 11.14718 * 20 18 16 22 22 Si 1.86800 * 120.00128 * 191.15480 * 20 18 16 23 23 H 1.48502 * 109.47118 * 59.99458 * 22 20 18 24 24 H 1.48492 * 109.47151 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46916 * 299.99708 * 22 20 18 26 26 H 1.09008 * 109.47108 * 270.21426 * 1 2 3 27 27 H 1.09002 * 109.47192 * 30.20676 * 1 2 3 28 28 H 1.09001 * 109.47438 * 150.21661 * 1 2 3 29 29 H 1.09001 * 109.47178 * 270.00007 * 5 4 3 30 30 H 1.09007 * 109.46959 * 29.99137 * 5 4 3 31 31 H 1.08997 * 109.47410 * 149.99279 * 5 4 3 32 32 H 0.96995 * 119.99334 * 359.97438 * 11 9 8 33 33 H 1.08997 * 109.46976 * 60.00834 * 14 12 11 34 34 H 1.09002 * 109.47326 * 180.02562 * 14 12 11 35 35 H 1.08999 * 109.47427 * 300.00467 * 14 12 11 36 36 H 1.09002 * 109.47402 * 64.99246 * 15 12 11 37 37 H 1.08998 * 109.47581 * 184.99614 * 15 12 11 38 38 H 1.09003 * 109.46684 * 95.09191 * 17 16 15 39 39 H 1.09000 * 109.46658 * 215.08156 * 17 16 15 40 40 H 1.09001 * 109.47507 * 335.08962 * 17 16 15 41 41 H 0.96996 * 120.00095 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2730 1.0554 0.0000 4 7 3.6110 0.6459 -0.0062 5 6 4.7774 1.5323 -0.0141 6 6 3.6458 -0.6971 -0.0036 7 17 5.0707 -1.6887 -0.0097 8 6 2.3372 -1.1438 0.0037 9 6 1.8921 -2.5478 0.0082 10 8 1.7133 -3.1257 1.0633 11 7 1.6832 -3.1924 -1.1569 12 6 1.2346 -4.5870 -1.1523 13 1 0.5680 -4.7515 -0.3057 14 6 2.4473 -5.5123 -1.0341 15 6 0.4891 -4.8872 -2.4542 16 7 -0.6009 -3.9236 -2.6262 17 6 -1.9301 -4.2169 -2.0844 18 6 -0.3773 -2.7489 -3.2933 19 1 0.4729 -2.6555 -3.9526 20 6 -1.2436 -1.6778 -3.1221 21 7 -2.1454 -1.7074 -2.1638 22 14 -1.1296 -0.1944 -4.2517 23 1 -1.3606 -0.6220 -5.6550 24 1 -2.1579 0.8039 -3.8632 25 1 0.2202 0.4137 -4.1354 26 1 -0.3634 0.0038 1.0277 27 1 -0.3634 0.8881 -0.5170 28 1 -0.3634 -0.8919 -0.5105 29 1 5.0613 1.7501 -1.0437 30 1 4.5309 2.4618 0.4991 31 1 5.6079 1.0446 0.4964 32 1 1.8255 -2.7314 -1.9984 33 1 2.9784 -5.2985 -0.1065 34 1 2.1137 -6.5500 -1.0311 35 1 3.1139 -5.3478 -1.8806 36 1 1.1791 -4.8089 -3.2944 37 1 0.0790 -5.8963 -2.4138 38 1 -2.0305 -3.7588 -1.1005 39 1 -2.6915 -3.8140 -2.7522 40 1 -2.0571 -5.2960 -1.9975 41 1 -2.7510 -0.9591 -2.0444 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754319414.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:51 Heat of formation + Delta-G solvation = 39.952313 kcal Electronic energy + Delta-G solvation = -25519.806716 eV Core-core repulsion = 21883.676406 eV Total energy + Delta-G solvation = -3636.130310 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.125 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.55037 -40.31104 -38.15002 -37.90326 -35.62590 -35.15488 -33.11091 -32.07413 -30.98387 -30.31396 -27.93519 -27.27870 -26.95766 -24.17303 -23.17387 -21.85741 -21.32707 -20.91698 -18.97552 -18.43814 -17.46867 -17.14649 -16.78272 -16.66550 -16.26517 -15.57600 -15.15027 -15.09448 -14.71728 -14.52758 -14.35843 -14.19919 -13.84113 -13.69115 -13.60703 -13.30192 -13.16604 -12.98581 -12.85831 -12.84751 -12.73564 -12.61791 -12.54375 -12.05472 -11.94508 -11.87571 -11.85613 -11.59783 -10.90380 -10.47986 -10.33472 -9.80067 -9.74539 -8.66961 -7.65569 -5.09566 0.12180 0.29561 1.18903 1.48247 1.49627 1.53097 1.55478 1.67296 2.52740 2.59548 3.30041 3.48284 3.75256 3.80853 4.09951 4.20808 4.23160 4.29673 4.29920 4.52440 4.55550 4.62242 4.65212 4.81988 4.83564 4.92959 4.94322 4.99392 5.08244 5.25336 5.37744 5.46904 5.49944 5.55425 5.75443 5.80693 5.88499 6.30445 6.44917 6.77821 7.29686 7.42259 8.00773 8.45708 9.36355 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.012078 B = 0.006685 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.789356 B = 4187.650299 C = 5571.910289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.118 3.882 3 N -0.293 5.293 4 N -0.348 5.348 5 C 0.081 3.919 6 C 0.158 3.842 7 Cl 0.032 6.968 8 C -0.276 4.276 9 C 0.602 3.398 10 O -0.587 6.587 11 N -0.673 5.673 12 C 0.119 3.881 13 H 0.046 0.954 14 C -0.147 4.147 15 C 0.143 3.857 16 N -0.611 5.611 17 C 0.181 3.819 18 C -0.246 4.246 19 H 0.071 0.929 20 C -0.027 4.027 21 N -0.918 5.918 22 Si 0.934 3.066 23 H -0.287 1.287 24 H -0.300 1.300 25 H -0.283 1.283 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.403 0.597 33 H 0.039 0.961 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.075 0.925 38 H -0.004 1.004 39 H 0.023 0.977 40 H 0.022 0.978 41 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.268 1.094 1.861 15.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.047 4.047 3 N -0.117 5.117 4 N -0.130 5.130 5 C -0.058 4.058 6 C -0.001 4.001 7 Cl 0.060 6.940 8 C -0.292 4.292 9 C 0.386 3.614 10 O -0.469 6.469 11 N -0.320 5.320 12 C 0.012 3.988 13 H 0.064 0.936 14 C -0.206 4.206 15 C 0.016 3.984 16 N -0.333 5.333 17 C 0.036 3.964 18 C -0.376 4.376 19 H 0.089 0.911 20 C -0.223 4.223 21 N -0.565 5.565 22 Si 0.765 3.235 23 H -0.214 1.214 24 H -0.227 1.227 25 H -0.209 1.209 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.105 0.895 29 H 0.120 0.880 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.239 0.761 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.014 0.986 39 H 0.042 0.958 40 H 0.040 0.960 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 15.297 2.066 2.587 15.651 hybrid contribution -0.237 0.467 -0.712 0.884 sum 15.060 2.533 1.875 15.386 Atomic orbital electron populations 1.20310 0.85256 1.04769 1.03194 1.22397 0.97438 0.88668 0.96216 1.77194 0.85851 1.21387 1.27281 1.48718 1.06902 1.02744 1.54608 1.22517 0.82647 0.94608 1.05994 1.21870 0.89668 0.84840 1.03719 1.98411 1.33756 1.65194 1.96624 1.19925 0.91437 0.95194 1.22655 1.17144 0.76295 0.84072 0.83853 1.90684 1.54725 1.68811 1.32643 1.45771 1.64965 1.13557 1.07690 1.21819 0.95844 0.80346 1.00773 0.93575 1.22031 0.97318 0.99681 1.01542 1.21358 0.89818 0.93264 0.93969 1.44086 1.05914 1.18622 1.64683 1.20517 0.86169 0.93445 0.96273 1.19252 1.10578 0.89700 1.18046 0.91078 1.25272 0.99815 0.98788 0.98466 1.70200 1.22998 1.31236 1.32093 0.85862 0.76834 0.81233 0.79573 1.21359 1.22655 1.20924 0.89973 0.90759 0.89492 0.88040 0.86961 0.86910 0.76098 0.94138 0.89862 0.91205 0.91715 0.90687 0.98576 0.95801 0.95965 0.94605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.13 10.28 71.23 0.73 -2.40 16 2 C 0.12 4.66 7.26 43.53 0.32 4.98 16 3 N -0.29 -10.39 12.49 -46.67 -0.58 -10.97 16 4 N -0.35 -9.91 3.98 -357.39 -1.42 -11.33 16 5 C 0.08 1.28 11.28 127.77 1.44 2.72 16 6 C 0.16 4.94 7.53 84.32 0.64 5.58 16 7 Cl 0.03 0.78 28.56 -2.72 -0.08 0.70 16 8 C -0.28 -10.70 5.88 -20.12 -0.12 -10.81 16 9 C 0.60 25.29 7.16 86.62 0.62 25.91 16 10 O -0.59 -28.23 16.77 -4.09 -0.07 -28.30 16 11 N -0.67 -26.14 4.48 -445.93 -2.00 -28.14 16 12 C 0.12 4.30 2.88 44.99 0.13 4.43 16 13 H 0.05 1.97 7.57 -2.39 -0.02 1.95 16 14 C -0.15 -4.10 9.49 71.98 0.68 -3.41 16 15 C 0.14 5.07 5.36 86.38 0.46 5.53 16 16 N -0.61 -27.60 2.82 -726.92 -2.05 -29.66 16 17 C 0.18 8.56 9.00 127.77 1.15 9.71 16 18 C -0.25 -11.94 8.05 84.04 0.68 -11.26 16 19 H 0.07 3.33 7.84 -2.91 -0.02 3.31 16 20 C -0.03 -1.39 5.03 84.86 0.43 -0.96 16 21 N -0.92 -49.60 9.63 21.65 0.21 -49.39 16 22 Si 0.93 42.87 29.57 68.60 2.03 44.90 16 23 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 24 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 25 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 26 H 0.08 3.12 8.14 -2.38 -0.02 3.10 16 27 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 28 H 0.09 4.18 7.10 -2.39 -0.02 4.16 16 29 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.11 1.26 7.77 -2.39 -0.02 1.24 16 32 H 0.40 15.74 7.38 -92.71 -0.68 15.06 16 33 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.06 2.11 8.03 -2.39 -0.02 2.09 16 37 H 0.07 2.35 7.86 -2.39 -0.02 2.33 16 38 H 0.00 -0.22 7.45 -2.39 -0.02 -0.24 16 39 H 0.02 1.21 7.03 -2.39 -0.02 1.19 16 40 H 0.02 0.90 7.84 -2.39 -0.02 0.88 16 41 H 0.24 13.21 8.31 -92.71 -0.77 12.44 16 Total: -1.00 -65.76 360.02 3.55 -62.21 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.36 Total: 19.97 kcal Atomic # 6 Polarization: 22.85 SS G_CDS: 7.16 Total: 30.01 kcal Atomic # 7 Polarization: -123.64 SS G_CDS: -5.85 Total: -129.49 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -0.07 Total: -28.30 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 17 Polarization: 0.78 SS G_CDS: -0.08 Total: 0.70 kcal Total: -65.76 3.55 -62.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754319414.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.158 kcal (2) G-P(sol) polarization free energy of solvation -65.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds