Wall clock time and date at job start Tue Mar 31 2020 10:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47221 * 2 1 4 4 N 1.34228 * 126.28218 * 265.15150 * 3 2 1 5 5 H 0.97001 * 125.73734 * 359.97438 * 4 3 2 6 6 N 1.39923 * 108.52613 * 180.30010 * 4 3 2 7 7 C 1.30536 * 108.89231 * 359.73102 * 6 4 3 8 8 Cl 1.73604 * 126.00344 * 180.02562 * 7 6 4 9 9 C 1.38064 * 126.27962 * 85.00408 * 3 2 1 10 10 C 1.47386 * 126.42458 * 359.95512 * 9 3 2 11 11 O 1.21604 * 120.00268 * 269.72074 * 10 9 3 12 12 N 1.34780 * 119.99739 * 89.72018 * 10 9 3 13 13 C 1.46500 * 120.00186 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.46998 * 35.00106 * 13 12 10 15 15 C 1.53001 * 109.46699 * 275.00063 * 13 12 10 16 16 C 1.52997 * 109.47170 * 155.00145 * 13 12 10 17 17 H 1.09002 * 109.47153 * 294.99818 * 16 13 12 18 18 C 1.53000 * 109.47060 * 55.00137 * 16 13 12 19 19 N 1.46500 * 109.47007 * 174.99907 * 16 13 12 20 20 C 1.36931 * 119.99971 * 154.99885 * 19 16 13 21 21 H 1.08005 * 120.00425 * 359.97438 * 20 19 16 22 22 C 1.38812 * 120.00390 * 180.02562 * 20 19 16 23 23 N 1.31624 * 119.99556 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00553 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47166 * 89.99808 * 24 22 20 26 26 H 1.48501 * 109.47423 * 210.00188 * 24 22 20 27 27 H 1.48508 * 109.46891 * 329.99990 * 24 22 20 28 28 H 1.08997 * 109.47025 * 299.99855 * 1 2 3 29 29 H 1.08997 * 109.47026 * 59.99953 * 1 2 3 30 30 H 1.08998 * 109.47096 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47484 * 239.99988 * 2 1 3 32 32 H 1.08997 * 109.47026 * 120.00047 * 2 1 3 33 33 H 0.97000 * 119.99892 * 359.97438 * 12 10 9 34 34 H 1.08998 * 109.47430 * 299.99778 * 15 13 12 35 35 H 1.08996 * 109.47271 * 60.00450 * 15 13 12 36 36 H 1.09008 * 109.46731 * 179.97438 * 15 13 12 37 37 H 1.08992 * 109.47399 * 59.99823 * 18 16 13 38 38 H 1.09004 * 109.46724 * 180.02562 * 18 16 13 39 39 H 1.09001 * 109.47194 * 299.99650 * 18 16 13 40 40 H 0.97004 * 120.00223 * 334.99863 * 19 16 13 41 41 H 0.96997 * 119.99679 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3833 2.1392 -1.0782 5 1 2.3574 1.8308 -1.9975 6 7 2.8001 3.4053 -0.6524 7 6 2.7032 3.4670 0.6479 8 17 3.1046 4.8359 1.6373 9 6 2.2133 2.2234 1.1088 10 6 1.9508 1.8514 2.5106 11 8 0.8552 2.0529 2.9982 12 7 2.9251 1.2879 3.2520 13 6 2.6642 0.9176 4.6452 14 1 1.6342 0.5747 4.7431 15 6 2.8846 2.1345 5.5460 16 6 3.6171 -0.2046 5.0617 17 1 3.3999 -1.1003 4.4797 18 6 5.0612 0.2317 4.8067 19 7 3.4385 -0.4930 6.4869 20 6 3.7605 -1.7288 6.9809 21 1 4.1458 -2.4911 6.3199 22 6 3.5909 -2.0023 8.3312 23 7 3.1209 -1.0735 9.1368 24 14 4.0308 -3.6879 9.0054 25 1 5.4516 -3.6929 9.4373 26 1 3.1593 -3.9995 10.1667 27 1 3.8313 -4.7114 7.9480 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.7989 1.1268 2.8628 34 1 3.9146 2.4773 5.4481 35 1 2.2057 2.9339 5.2493 36 1 2.6899 1.8591 6.5826 37 1 5.2783 1.1274 5.3885 38 1 5.7400 -0.5680 5.1030 39 1 5.1941 0.4462 3.7463 40 1 3.0922 0.1915 7.0806 41 1 3.0020 -1.2647 10.0802 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755238904.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:22 Heat of formation + Delta-G solvation = 33.829196 kcal Electronic energy + Delta-G solvation = -24272.227929 eV Core-core repulsion = 20635.832101 eV Total energy + Delta-G solvation = -3636.395828 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.84554 -39.33419 -37.05288 -36.79925 -34.48800 -33.85058 -32.08011 -31.42863 -29.99804 -28.91690 -28.18312 -24.76857 -24.31029 -23.48643 -22.23075 -21.99799 -19.82889 -19.15019 -18.17811 -17.41385 -16.65496 -15.81506 -15.56369 -15.25147 -15.06186 -14.67721 -14.30172 -14.11683 -14.07216 -13.48092 -13.41593 -13.03039 -12.78910 -12.43390 -12.27501 -12.13998 -11.92165 -11.68159 -11.59503 -11.54190 -11.26961 -10.98721 -10.91387 -10.83529 -10.43880 -10.25141 -9.98873 -9.87030 -9.75723 -9.62375 -9.04182 -8.93612 -8.76048 -6.99852 -5.78071 -3.07466 1.20608 1.21768 1.91646 2.55659 2.68395 3.42348 3.45554 3.49693 3.50670 4.10174 4.41090 4.58393 4.69000 4.83388 4.96786 5.09341 5.22074 5.38198 5.49700 5.52183 5.59176 5.64606 5.65537 5.71452 5.86966 5.94514 6.10438 6.19438 6.33170 6.43454 6.50729 6.62541 6.68113 6.73540 6.94759 6.95557 7.09703 7.68423 7.72966 8.39184 8.42093 9.51759 10.07566 10.42340 11.44523 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.018807 B = 0.003336 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.468497 B = 8390.507380 C = 9160.484521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.069 4.069 3 C 0.146 3.854 4 N -0.447 5.447 5 H 0.447 0.553 6 N -0.278 5.278 7 C 0.159 3.841 8 Cl 0.022 6.978 9 C -0.264 4.264 10 C 0.594 3.406 11 O -0.528 6.528 12 N -0.708 5.708 13 C 0.136 3.864 14 H 0.089 0.911 15 C -0.160 4.160 16 C 0.169 3.831 17 H 0.051 0.949 18 C -0.169 4.169 19 N -0.719 5.719 20 C -0.241 4.241 21 H 0.070 0.930 22 C -0.011 4.011 23 N -0.931 5.931 24 Si 0.907 3.093 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.398 0.602 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.032 0.968 40 H 0.387 0.613 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.683 6.049 -22.314 23.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.108 4.108 3 C 0.014 3.986 4 N -0.156 5.156 5 H 0.293 0.707 6 N -0.104 5.104 7 C -0.033 4.033 8 Cl 0.050 6.950 9 C -0.280 4.280 10 C 0.377 3.623 11 O -0.404 6.404 12 N -0.360 5.360 13 C 0.032 3.968 14 H 0.107 0.893 15 C -0.218 4.218 16 C 0.058 3.942 17 H 0.069 0.931 18 C -0.229 4.229 19 N -0.363 5.363 20 C -0.372 4.372 21 H 0.088 0.912 22 C -0.208 4.208 23 N -0.579 5.579 24 Si 0.738 3.262 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.234 0.766 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.051 0.949 40 H 0.223 0.777 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.080 6.788 -22.819 23.831 hybrid contribution 0.536 -1.054 0.685 1.367 sum -0.543 5.734 -22.133 22.870 Atomic orbital electron populations 1.21778 0.92798 1.03045 1.03257 1.20428 0.97611 0.87755 1.04996 1.21484 0.95889 0.95200 0.86034 1.45825 1.51480 1.09343 1.08964 0.70661 1.77146 1.23337 0.99060 1.10835 1.22576 0.99864 0.90306 0.90572 1.98432 1.91931 1.39727 1.64892 1.19892 1.18569 0.94445 0.95068 1.17087 0.84375 0.77340 0.83534 1.90800 1.23634 1.53356 1.72565 1.46255 1.14782 1.61779 1.13220 1.21368 1.01231 0.95533 0.78708 0.89266 1.22143 1.01447 0.97538 1.00682 1.20350 0.91571 0.94029 0.88227 0.93094 1.22539 1.00289 1.01972 0.98108 1.42453 1.77874 1.14024 1.01921 1.19212 1.35911 0.89951 0.92091 0.91158 1.24737 1.01909 0.97863 0.96259 1.69659 1.51295 1.32765 1.04184 0.86199 0.77699 0.83805 0.78496 1.21763 1.21783 1.20779 0.90913 0.92607 0.91067 0.89633 0.88120 0.76602 0.92490 0.92973 0.90520 0.92736 0.92445 0.94905 0.77737 0.93440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.89 37.16 0.37 -0.79 16 2 C -0.07 -0.49 6.27 -27.88 -0.17 -0.66 16 3 C 0.15 1.38 6.55 -81.61 -0.53 0.85 16 4 N -0.45 -3.69 7.28 33.86 0.25 -3.44 16 5 H 0.45 1.94 8.96 -182.73 -1.64 0.30 16 6 N -0.28 -3.22 12.64 33.18 0.42 -2.80 16 7 C 0.16 2.03 7.89 -16.90 -0.13 1.89 16 8 Cl 0.02 0.28 29.19 -51.86 -1.51 -1.24 16 9 C -0.26 -3.33 5.88 -105.04 -0.62 -3.95 16 10 C 0.59 8.86 7.23 -12.54 -0.09 8.77 16 11 O -0.53 -9.81 16.77 5.27 0.09 -9.72 16 12 N -0.71 -9.93 4.99 -54.90 -0.27 -10.20 16 13 C 0.14 2.30 2.62 -67.93 -0.18 2.12 16 14 H 0.09 1.71 7.58 -51.93 -0.39 1.31 16 15 C -0.16 -2.72 9.00 37.16 0.33 -2.38 16 16 C 0.17 3.16 2.93 -67.93 -0.20 2.96 16 17 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 18 C -0.17 -2.79 9.01 37.16 0.33 -2.45 16 19 N -0.72 -17.26 5.03 -53.43 -0.27 -17.53 16 20 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 21 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 22 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 23 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 24 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.10 0.80 8.08 -51.93 -0.42 0.38 16 33 H 0.40 4.80 6.56 -40.82 -0.27 4.54 16 34 H 0.06 0.90 6.56 -51.93 -0.34 0.56 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.44 6.29 -51.92 -0.33 1.12 16 37 H 0.05 0.92 6.56 -51.93 -0.34 0.58 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.03 0.43 6.29 -51.93 -0.33 0.10 16 40 H 0.39 9.86 5.77 -40.82 -0.24 9.63 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 358.26 15.07 5.40 5.40 Total: -1.00 -32.78 358.26 -8.13 -40.91 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -6.79 Total: 9.22 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -1.14 Total: -0.66 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: 0.85 Total: -60.85 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 17 Polarization: 0.28 SS G_CDS: -1.51 Total: -1.24 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.78 -8.13 -40.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755238904.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.743 kcal (2) G-P(sol) polarization free energy of solvation -32.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds