Wall clock time and date at job start Tue Mar 31 2020 10:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47221 * 2 1 4 4 N 1.34228 * 126.28218 * 265.15150 * 3 2 1 5 5 H 0.97001 * 125.73734 * 359.97438 * 4 3 2 6 6 N 1.39923 * 108.52613 * 180.30010 * 4 3 2 7 7 C 1.30536 * 108.89231 * 359.73102 * 6 4 3 8 8 Cl 1.73604 * 126.00344 * 180.02562 * 7 6 4 9 9 C 1.38064 * 126.27962 * 85.00408 * 3 2 1 10 10 C 1.47386 * 126.42458 * 359.95512 * 9 3 2 11 11 O 1.21604 * 120.00268 * 269.72074 * 10 9 3 12 12 N 1.34780 * 119.99739 * 89.72018 * 10 9 3 13 13 C 1.46500 * 120.00186 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.46998 * 35.00106 * 13 12 10 15 15 C 1.53001 * 109.46699 * 275.00063 * 13 12 10 16 16 C 1.52997 * 109.47170 * 155.00145 * 13 12 10 17 17 H 1.09002 * 109.47153 * 294.99818 * 16 13 12 18 18 C 1.53000 * 109.47060 * 55.00137 * 16 13 12 19 19 N 1.46500 * 109.47007 * 174.99907 * 16 13 12 20 20 C 1.36931 * 119.99971 * 154.99885 * 19 16 13 21 21 H 1.08005 * 120.00425 * 359.97438 * 20 19 16 22 22 C 1.38812 * 120.00390 * 180.02562 * 20 19 16 23 23 N 1.31624 * 119.99556 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00553 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47166 * 89.99808 * 24 22 20 26 26 H 1.48501 * 109.47423 * 210.00188 * 24 22 20 27 27 H 1.48508 * 109.46891 * 329.99990 * 24 22 20 28 28 H 1.08997 * 109.47025 * 299.99855 * 1 2 3 29 29 H 1.08997 * 109.47026 * 59.99953 * 1 2 3 30 30 H 1.08998 * 109.47096 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47484 * 239.99988 * 2 1 3 32 32 H 1.08997 * 109.47026 * 120.00047 * 2 1 3 33 33 H 0.97000 * 119.99892 * 359.97438 * 12 10 9 34 34 H 1.08998 * 109.47430 * 299.99778 * 15 13 12 35 35 H 1.08996 * 109.47271 * 60.00450 * 15 13 12 36 36 H 1.09008 * 109.46731 * 179.97438 * 15 13 12 37 37 H 1.08992 * 109.47399 * 59.99823 * 18 16 13 38 38 H 1.09004 * 109.46724 * 180.02562 * 18 16 13 39 39 H 1.09001 * 109.47194 * 299.99650 * 18 16 13 40 40 H 0.97004 * 120.00223 * 334.99863 * 19 16 13 41 41 H 0.96997 * 119.99679 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3833 2.1392 -1.0782 5 1 2.3574 1.8308 -1.9975 6 7 2.8001 3.4053 -0.6524 7 6 2.7032 3.4670 0.6479 8 17 3.1046 4.8359 1.6373 9 6 2.2133 2.2234 1.1088 10 6 1.9508 1.8514 2.5106 11 8 0.8552 2.0529 2.9982 12 7 2.9251 1.2879 3.2520 13 6 2.6642 0.9176 4.6452 14 1 1.6342 0.5747 4.7431 15 6 2.8846 2.1345 5.5460 16 6 3.6171 -0.2046 5.0617 17 1 3.3999 -1.1003 4.4797 18 6 5.0612 0.2317 4.8067 19 7 3.4385 -0.4930 6.4869 20 6 3.7605 -1.7288 6.9809 21 1 4.1458 -2.4911 6.3199 22 6 3.5909 -2.0023 8.3312 23 7 3.1209 -1.0735 9.1368 24 14 4.0308 -3.6879 9.0054 25 1 5.4516 -3.6929 9.4373 26 1 3.1593 -3.9995 10.1667 27 1 3.8313 -4.7114 7.9480 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.7989 1.1268 2.8628 34 1 3.9146 2.4773 5.4481 35 1 2.2057 2.9339 5.2493 36 1 2.6899 1.8591 6.5826 37 1 5.2783 1.1274 5.3885 38 1 5.7400 -0.5680 5.1030 39 1 5.1941 0.4462 3.7463 40 1 3.0922 0.1915 7.0806 41 1 3.0020 -1.2647 10.0802 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755238904.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:22 Heat of formation + Delta-G solvation = 10.380427 kcal Electronic energy + Delta-G solvation = -24273.244744 eV Core-core repulsion = 20635.832101 eV Total energy + Delta-G solvation = -3637.412643 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.125 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.70460 -40.61041 -38.31213 -37.96846 -35.53849 -35.16843 -33.60756 -32.54212 -31.18128 -30.15953 -29.74878 -26.14589 -25.64080 -24.76249 -23.33201 -22.93708 -20.92367 -20.59223 -19.44845 -18.99248 -17.72788 -16.96957 -16.60638 -16.45004 -16.19904 -16.05157 -15.81955 -15.38804 -15.04393 -14.97925 -14.55058 -14.43194 -13.88883 -13.74714 -13.44380 -13.14961 -13.05184 -12.95120 -12.91035 -12.77724 -12.61895 -12.37300 -12.21984 -12.09790 -12.00618 -11.78645 -11.63423 -11.55890 -11.06064 -10.91201 -10.59096 -10.08410 -9.93753 -8.98940 -7.89532 -5.18057 0.34201 0.41796 0.97306 1.49972 1.51280 1.52440 1.60617 1.80120 2.29753 2.62382 3.40066 3.44614 3.66809 3.82425 3.93224 4.03034 4.06896 4.13137 4.25329 4.37968 4.40809 4.56362 4.64878 4.74357 4.76932 4.91281 4.97512 5.00740 5.04310 5.08795 5.24674 5.29270 5.32867 5.52704 5.59506 5.67008 5.94838 6.21591 6.32462 6.56169 7.23613 7.39247 8.14026 8.36836 9.34150 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.018807 B = 0.003336 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.468497 B = 8390.507380 C = 9160.484521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.068 4.068 3 C 0.169 3.831 4 N -0.423 5.423 5 H 0.467 0.533 6 N -0.290 5.290 7 C 0.148 3.852 8 Cl 0.016 6.984 9 C -0.295 4.295 10 C 0.601 3.399 11 O -0.569 6.569 12 N -0.695 5.695 13 C 0.151 3.849 14 H 0.064 0.936 15 C -0.151 4.151 16 C 0.168 3.832 17 H 0.053 0.947 18 C -0.159 4.159 19 N -0.734 5.734 20 C -0.235 4.235 21 H 0.080 0.920 22 C -0.076 4.076 23 N -0.970 5.970 24 Si 0.970 3.030 25 H -0.289 1.289 26 H -0.300 1.300 27 H -0.268 1.268 28 H 0.035 0.965 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.128 0.872 32 H 0.094 0.906 33 H 0.411 0.589 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.376 0.624 41 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.334 4.897 -25.270 25.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 C 0.035 3.965 4 N -0.134 5.134 5 H 0.317 0.683 6 N -0.116 5.116 7 C -0.044 4.044 8 Cl 0.043 6.957 9 C -0.310 4.310 10 C 0.386 3.614 11 O -0.448 6.448 12 N -0.347 5.347 13 C 0.045 3.955 14 H 0.082 0.918 15 C -0.210 4.210 16 C 0.059 3.941 17 H 0.071 0.929 18 C -0.219 4.219 19 N -0.376 5.376 20 C -0.367 4.367 21 H 0.097 0.903 22 C -0.268 4.268 23 N -0.621 5.621 24 Si 0.800 3.200 25 H -0.216 1.216 26 H -0.227 1.227 27 H -0.193 1.193 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.146 0.854 32 H 0.112 0.888 33 H 0.249 0.751 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.210 0.790 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.016 5.633 -25.880 26.486 hybrid contribution 0.187 -0.686 1.445 1.611 sum 0.171 4.946 -24.435 24.931 Atomic orbital electron populations 1.21756 0.93204 1.03677 1.02098 1.20592 0.97063 0.86282 1.06772 1.21745 0.93764 0.95751 0.85245 1.45829 1.49756 1.08084 1.09778 0.68270 1.77100 1.23734 1.00570 1.10207 1.22620 1.00567 0.90219 0.90973 1.98423 1.91997 1.40062 1.65171 1.19721 1.21449 0.95495 0.94365 1.17345 0.83497 0.76174 0.84356 1.90782 1.25372 1.54963 1.73669 1.46017 1.15381 1.61443 1.11879 1.20938 0.99334 0.94876 0.80314 0.91826 1.22042 1.02184 0.97447 0.99310 1.20512 0.93358 0.94736 0.85504 0.92880 1.22370 0.97654 1.01151 1.00699 1.42661 1.77869 1.13056 1.04013 1.19621 1.33913 0.90943 0.92249 0.90261 1.25518 1.03104 1.01281 0.96879 1.69821 1.53568 1.34712 1.04004 0.85183 0.76993 0.80179 0.77655 1.21588 1.22703 1.19258 0.94539 0.91276 0.89598 0.85419 0.88789 0.75065 0.91108 0.93138 0.92770 0.93199 0.93699 0.90845 0.78999 0.94175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.89 71.98 0.71 -1.25 16 2 C -0.07 -0.75 6.27 29.85 0.19 -0.56 16 3 C 0.17 2.74 6.55 42.15 0.28 3.02 16 4 N -0.42 -5.63 7.28 -46.80 -0.34 -5.97 16 5 H 0.47 2.16 8.96 -213.43 -1.91 0.25 16 6 N -0.29 -6.09 12.64 -48.95 -0.62 -6.71 16 7 C 0.15 3.58 7.89 85.66 0.68 4.25 16 8 Cl 0.02 0.38 29.19 -2.72 -0.08 0.30 16 9 C -0.29 -7.02 5.88 -20.14 -0.12 -7.14 16 10 C 0.60 17.68 7.23 86.65 0.63 18.30 16 11 O -0.57 -21.59 16.77 -4.04 -0.07 -21.66 16 12 N -0.69 -18.72 4.99 -445.84 -2.22 -20.94 16 13 C 0.15 5.10 2.62 44.99 0.12 5.21 16 14 H 0.06 2.51 7.58 -2.39 -0.02 2.49 16 15 C -0.15 -5.22 9.00 71.98 0.65 -4.57 16 16 C 0.17 6.14 2.93 44.99 0.13 6.28 16 17 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 18 C -0.16 -4.93 9.01 71.98 0.65 -4.28 16 19 N -0.73 -35.49 5.03 -322.94 -1.63 -37.12 16 20 C -0.24 -12.59 9.93 84.03 0.83 -11.76 16 21 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 22 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 23 N -0.97 -58.88 13.06 21.65 0.28 -58.60 16 24 Si 0.97 45.35 29.55 68.60 2.03 47.38 16 25 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 26 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 28 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.09 1.23 8.08 -2.39 -0.02 1.21 16 33 H 0.41 8.93 6.56 -92.71 -0.61 8.33 16 34 H 0.07 2.21 6.56 -2.39 -0.02 2.19 16 35 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.05 2.12 6.29 -2.38 -0.01 2.10 16 37 H 0.05 1.60 6.56 -2.39 -0.02 1.59 16 38 H 0.04 1.51 8.14 -2.39 -0.02 1.50 16 39 H 0.07 1.67 6.29 -2.39 -0.02 1.65 16 40 H 0.38 19.73 5.77 -92.71 -0.54 19.20 16 41 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -72.64 358.26 0.60 -72.04 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: -1.96 Total: 27.57 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 5.21 Total: 3.71 kcal Atomic # 7 Polarization: -124.82 SS G_CDS: -4.52 Total: -129.34 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.07 Total: -21.66 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Atomic # 17 Polarization: 0.38 SS G_CDS: -0.08 Total: 0.30 kcal Total: -72.64 0.60 -72.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755238904.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.418 kcal (2) G-P(sol) polarization free energy of solvation -72.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds