Wall clock time and date at job start Tue Mar 31 2020 10:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47372 * 2 1 4 4 C 1.52992 * 109.47422 * 239.99543 * 2 1 3 5 5 C 1.53002 * 109.47263 * 175.00106 * 4 2 1 6 6 C 1.53005 * 109.47110 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.46957 * 179.97438 * 6 5 4 8 8 C 1.36935 * 119.99541 * 180.02562 * 7 6 5 9 9 H 1.07998 * 120.00381 * 359.97438 * 8 7 6 10 10 C 1.38815 * 119.99811 * 180.02562 * 8 7 6 11 11 N 1.31622 * 119.99781 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00248 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47078 * 89.99938 * 12 10 8 14 14 H 1.48495 * 109.47323 * 210.00269 * 12 10 8 15 15 H 1.48502 * 109.47169 * 330.00117 * 12 10 8 16 16 N 1.46502 * 109.46908 * 119.99534 * 2 1 3 17 17 C 1.34773 * 120.00162 * 275.00085 * 16 2 1 18 18 O 1.21645 * 120.00040 * 354.86068 * 17 16 2 19 19 C 1.47035 * 120.00282 * 174.86128 * 17 16 2 20 20 C 1.38537 * 126.90500 * 99.57982 * 19 17 16 21 21 Cl 1.73595 * 127.33932 * 359.97438 * 20 19 17 22 22 C 1.39816 * 105.32653 * 179.97438 * 20 19 17 23 23 N 1.30835 * 107.87139 * 0.02562 * 22 20 19 24 24 N 1.28437 * 110.98500 * 359.73537 * 23 22 20 25 25 C 1.46505 * 125.18661 * 180.26253 * 24 23 22 26 26 H 1.09000 * 109.47037 * 60.00505 * 1 2 3 27 27 H 1.09000 * 109.47291 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47177 * 300.00562 * 1 2 3 29 29 H 1.09005 * 109.47466 * 294.99924 * 4 2 1 30 30 H 1.09002 * 109.47321 * 54.99835 * 4 2 1 31 31 H 1.08997 * 109.46858 * 299.99971 * 5 4 2 32 32 H 1.09001 * 109.47159 * 60.00195 * 5 4 2 33 33 H 1.09000 * 109.46871 * 300.00137 * 6 5 4 34 34 H 1.09001 * 109.47085 * 59.99984 * 6 5 4 35 35 H 0.96996 * 119.99977 * 0.02562 * 7 6 5 36 36 H 0.96998 * 119.99822 * 179.97438 * 11 10 8 37 37 H 0.96999 * 120.00015 * 95.00198 * 16 2 1 38 38 H 1.07997 * 126.06368 * 179.97438 * 22 20 19 39 39 H 1.08994 * 109.47102 * 275.09676 * 25 24 23 40 40 H 1.08993 * 109.47003 * 35.09846 * 25 24 23 41 41 H 1.09000 * 109.46877 * 155.09913 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3135 6 6 4.0749 -1.3342 -2.5630 7 7 5.5349 -1.2302 -2.6250 8 6 6.2186 -1.8036 -3.6638 9 1 5.6815 -2.3327 -4.4371 10 6 7.6020 -1.7056 -3.7223 11 7 8.2565 -1.0612 -2.7795 12 14 8.5348 -2.4883 -5.1389 13 1 8.6669 -1.5078 -6.2463 14 1 9.8852 -2.8975 -4.6763 15 1 7.7937 -3.6818 -5.6202 16 7 2.0183 -0.6905 1.1963 17 6 2.1470 -0.0181 2.3572 18 8 1.9477 1.1814 2.3906 19 6 2.5282 -0.7344 3.5833 20 6 3.7907 -0.8003 4.1498 21 17 5.2474 -0.0594 3.5645 22 6 3.6418 -1.5908 5.2935 23 7 2.3862 -1.9497 5.3728 24 7 1.7068 -1.4652 4.3965 25 6 0.2713 -1.6673 4.1845 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.7517 -1.7716 -1.2054 30 1 1.6054 -0.2619 -2.1369 31 1 3.8532 0.4369 -1.3572 32 1 3.9995 -1.0728 -0.4257 33 1 3.7865 -2.3844 -2.5198 34 1 3.6403 -0.8743 -3.4506 35 1 6.0172 -0.7554 -1.9303 36 1 9.2233 -0.9930 -2.8202 37 1 2.2490 -1.6317 1.1528 38 1 4.4246 -1.8583 5.9877 39 1 0.1110 -2.6054 3.6532 40 1 -0.2366 -1.7041 5.1482 41 1 -0.1285 -0.8426 3.5944 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755498327.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:42 Heat of formation + Delta-G solvation = 13.890346 kcal Electronic energy + Delta-G solvation = -23670.705244 eV Core-core repulsion = 20033.444802 eV Total energy + Delta-G solvation = -3637.260442 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.72341 -40.85239 -38.02433 -37.68466 -36.54892 -34.50198 -34.21330 -32.97020 -31.67630 -30.66741 -28.15399 -27.24565 -25.26353 -24.42260 -22.90908 -22.38692 -21.80947 -21.34113 -19.38516 -19.10276 -17.92520 -17.17297 -17.08345 -16.64846 -16.38062 -15.95375 -15.73256 -15.42379 -15.22737 -15.15447 -14.58726 -14.46515 -14.11175 -13.85976 -13.66955 -13.46054 -13.21337 -13.02429 -12.93993 -12.82797 -12.77289 -12.39966 -12.26120 -12.07715 -11.87488 -11.76329 -11.66074 -11.51151 -11.38879 -10.93120 -10.42729 -10.26596 -9.89611 -9.00432 -7.95273 -5.24864 0.26515 0.68618 1.12811 1.33621 1.46747 1.49126 1.57590 1.63487 2.09027 2.55926 3.34341 3.38399 3.45107 3.63777 3.91056 3.95785 4.10256 4.22394 4.24995 4.27539 4.32581 4.40596 4.52250 4.57570 4.65849 4.83589 4.85936 4.89796 4.98730 5.05490 5.10881 5.30054 5.32414 5.43221 5.46389 5.50217 5.50843 6.24390 6.26926 6.73261 6.88398 7.32311 8.09938 8.31555 9.28479 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.014019 B = 0.003250 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.851932 B = 8613.810276 C = 9910.063121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.140 3.860 3 H 0.070 0.930 4 C -0.109 4.109 5 C -0.115 4.115 6 C 0.150 3.850 7 N -0.752 5.752 8 C -0.248 4.248 9 H 0.078 0.922 10 C -0.078 4.078 11 N -0.971 5.971 12 Si 0.976 3.024 13 H -0.287 1.287 14 H -0.295 1.295 15 H -0.267 1.267 16 N -0.693 5.693 17 C 0.598 3.402 18 O -0.552 6.552 19 C -0.026 4.026 20 C -0.133 4.133 21 Cl -0.027 7.027 22 C 0.023 3.977 23 N -0.276 5.276 24 N -0.259 5.259 25 C 0.075 3.925 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.025 0.975 34 H 0.022 0.978 35 H 0.371 0.629 36 H 0.251 0.749 37 H 0.413 0.587 38 H 0.220 0.780 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.066 -2.664 15.092 26.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.037 3.963 3 H 0.088 0.912 4 C -0.147 4.147 5 C -0.153 4.153 6 C 0.024 3.976 7 N -0.394 5.394 8 C -0.379 4.379 9 H 0.096 0.904 10 C -0.270 4.270 11 N -0.622 5.622 12 Si 0.804 3.196 13 H -0.214 1.214 14 H -0.222 1.222 15 H -0.191 1.191 16 N -0.344 5.344 17 C 0.381 3.619 18 O -0.428 6.428 19 C -0.158 4.158 20 C -0.171 4.171 21 Cl 0.001 6.999 22 C -0.154 4.154 23 N -0.107 5.107 24 N -0.047 5.047 25 C -0.063 4.063 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.069 0.931 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.040 0.960 35 H 0.202 0.798 36 H 0.060 0.940 37 H 0.250 0.750 38 H 0.236 0.764 39 H 0.134 0.866 40 H 0.138 0.862 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -22.074 -2.494 15.493 27.083 hybrid contribution 2.187 0.221 -0.893 2.373 sum -19.887 -2.273 14.600 24.775 Atomic orbital electron populations 1.22117 0.92570 1.03610 1.02914 1.21177 0.95497 0.96729 0.82928 0.91222 1.21771 0.93287 1.02428 0.97237 1.21617 0.96795 0.99726 0.97208 1.20858 0.83133 0.97363 0.96211 1.42669 1.02639 1.65980 1.28103 1.19677 0.90033 1.26483 1.01737 0.90437 1.25633 0.97552 1.02449 1.01410 1.69838 1.07048 1.48877 1.36439 0.85108 0.77641 0.78286 0.78533 1.21372 1.22203 1.19121 1.46068 1.65031 1.14660 1.08688 1.16871 0.76696 0.85815 0.82539 1.90855 1.50782 1.14979 1.86180 1.21219 0.91772 1.04662 0.98113 1.21563 0.88322 1.07085 1.00118 1.98397 1.32536 1.81082 1.87838 1.23955 0.94292 0.99172 0.97947 1.73246 1.05748 1.20578 1.11158 1.45875 1.10302 1.33186 1.15372 1.22688 0.71386 1.05673 1.06593 0.89889 0.90216 0.93150 0.89110 0.88513 0.93562 0.92850 0.95695 0.96049 0.79791 0.94042 0.75032 0.76358 0.86641 0.86191 0.88202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.48 71.98 0.68 -1.36 16 2 C 0.14 2.68 2.62 44.99 0.12 2.79 16 3 H 0.07 1.72 7.51 -2.39 -0.02 1.71 16 4 C -0.11 -2.13 4.75 30.59 0.15 -1.98 16 5 C -0.12 -3.52 5.22 30.60 0.16 -3.36 16 6 C 0.15 5.84 6.26 86.38 0.54 6.38 16 7 N -0.75 -39.24 5.60 -343.44 -1.92 -41.16 16 8 C -0.25 -14.09 9.99 84.03 0.84 -13.25 16 9 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 10 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 11 N -0.97 -60.99 13.06 21.65 0.28 -60.70 16 12 Si 0.98 46.62 29.55 68.60 2.03 48.65 16 13 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 14 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 15 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 16 N -0.69 -13.69 4.52 -446.20 -2.02 -15.71 16 17 C 0.60 14.95 6.88 86.55 0.60 15.54 16 18 O -0.55 -17.82 16.74 -4.17 -0.07 -17.89 16 19 C -0.03 -0.62 6.72 40.76 0.27 -0.35 16 20 C -0.13 -3.32 6.89 22.72 0.16 -3.17 16 21 Cl -0.03 -0.76 29.24 -2.72 -0.08 -0.84 16 22 C 0.02 0.48 12.04 85.22 1.03 1.50 16 23 N -0.28 -5.62 11.89 -57.06 -0.68 -6.30 16 24 N -0.26 -4.78 3.75 -355.93 -1.34 -6.11 16 25 C 0.07 0.66 11.22 127.77 1.43 2.09 16 26 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 27 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.05 1.71 7.75 -2.39 -0.02 1.69 16 33 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.02 0.82 8.14 -2.39 -0.02 0.81 16 35 H 0.37 20.90 7.67 -92.71 -0.71 20.19 16 36 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 37 H 0.41 6.85 8.59 -92.71 -0.80 6.05 16 38 H 0.22 3.12 8.06 -2.91 -0.02 3.10 16 39 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.10 0.81 7.66 -2.39 -0.02 0.80 16 Total: -1.00 -76.94 368.03 2.19 -74.75 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: -0.45 Total: 24.58 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 6.44 Total: 0.73 kcal Atomic # 7 Polarization: -124.31 SS G_CDS: -5.67 Total: -129.98 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.07 Total: -17.89 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -0.08 Total: -0.84 kcal Total: -76.94 2.19 -74.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755498327.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.642 kcal (2) G-P(sol) polarization free energy of solvation -76.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds