Wall clock time and date at job start Tue Mar 31 2020 11:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30170 * 126.80029 * 2 1 4 4 O 1.20926 * 111.60481 * 180.02562 * 3 2 1 5 5 C 1.34041 * 111.56244 * 359.76302 * 4 3 2 6 6 C 1.50708 * 126.77515 * 180.28838 * 5 4 3 7 7 C 1.35444 * 106.45028 * 0.38145 * 5 4 3 8 8 C 1.50702 * 128.00977 * 179.90921 * 7 5 4 9 9 C 1.52994 * 109.47070 * 269.68035 * 8 7 5 10 10 C 1.50707 * 109.46811 * 179.97438 * 9 8 7 11 11 O 1.21278 * 119.99923 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99820 * 179.97438 * 10 9 8 13 13 C 1.39238 * 119.99666 * 175.71027 * 12 10 9 14 14 C 1.39478 * 119.83173 * 215.01020 * 13 12 10 15 15 C 1.36379 * 120.17201 * 179.75846 * 14 13 12 16 16 C 1.40874 * 119.82029 * 0.52144 * 15 14 13 17 17 C 1.41151 * 120.15786 * 179.71874 * 16 15 14 18 18 H 1.08007 * 119.99861 * 214.80113 * 17 16 15 19 19 C 1.39909 * 120.00684 * 34.79914 * 17 16 15 20 20 N 1.30877 * 119.99506 * 355.56314 * 19 17 16 21 21 Si 1.86797 * 120.00452 * 175.55823 * 19 17 16 22 22 H 1.48502 * 109.47144 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46921 * 120.00024 * 21 19 17 24 24 H 1.48499 * 109.47188 * 240.00305 * 21 19 17 25 25 C 1.40866 * 119.67865 * 359.73530 * 16 15 14 26 26 C 1.36376 * 119.82261 * 359.97438 * 25 16 15 27 27 H 1.08997 * 109.46765 * 269.97374 * 1 2 3 28 28 H 1.09002 * 109.47024 * 29.97452 * 1 2 3 29 29 H 1.09001 * 109.47308 * 149.97209 * 1 2 3 30 30 H 1.09002 * 109.47227 * 270.11135 * 6 5 4 31 31 H 1.08998 * 109.46657 * 30.11116 * 6 5 4 32 32 H 1.08999 * 109.46805 * 150.11020 * 6 5 4 33 33 H 1.09004 * 109.47157 * 149.67838 * 8 7 5 34 34 H 1.09006 * 109.46804 * 29.68220 * 8 7 5 35 35 H 1.08997 * 109.47363 * 299.99609 * 9 8 7 36 36 H 1.08994 * 109.47035 * 60.00351 * 9 8 7 37 37 H 0.96994 * 120.00374 * 355.71211 * 12 10 9 38 38 H 1.08005 * 119.91748 * 0.02742 * 14 13 12 39 39 H 1.07993 * 120.09182 * 180.25817 * 15 14 13 40 40 H 0.96993 * 119.99670 * 180.02562 * 20 19 17 41 41 H 1.07998 * 120.09116 * 179.97438 * 25 16 15 42 42 H 1.08008 * 119.91294 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 -0.0005 5 6 3.6024 -0.6068 0.0042 6 6 4.9022 -1.3696 0.0113 7 6 2.3540 -1.1321 -0.0006 8 6 1.9591 -2.5864 -0.0002 9 6 1.8243 -3.0786 -1.4425 10 6 1.4299 -4.5332 -1.4421 11 8 1.2719 -5.1183 -0.3916 12 7 1.2520 -5.1835 -2.6091 13 6 0.9755 -6.5482 -2.6104 14 6 1.4801 -7.3574 -3.6283 15 6 1.2177 -8.6957 -3.6337 16 6 0.4256 -9.2584 -2.6136 17 6 0.1446 -10.6416 -2.6156 18 1 -0.8120 -10.9989 -2.2636 19 6 1.1051 -11.5501 -3.0734 20 7 2.2297 -11.1131 -3.5805 21 14 0.7825 -13.3865 -2.9608 22 1 -0.5528 -13.6183 -2.3537 23 1 0.8166 -13.9794 -4.3219 24 1 1.8270 -14.0218 -2.1178 25 6 -0.0850 -8.4338 -1.5920 26 6 0.1910 -7.0983 -1.5968 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3634 -0.8897 -0.5143 30 1 5.2202 -1.5550 -1.0147 31 1 5.6636 -0.7851 0.5277 32 1 4.7627 -2.3202 0.5259 33 1 1.0054 -2.7038 0.5144 34 1 2.7232 -3.1702 0.5131 35 1 1.0601 -2.4949 -1.9558 36 1 2.7779 -2.9613 -1.9571 37 1 1.3165 -4.7010 -3.4480 38 1 2.0838 -6.9237 -4.4118 39 1 1.6125 -9.3217 -4.4201 40 1 2.8955 -11.7428 -3.8982 41 1 -0.6933 -8.8581 -0.8070 42 1 -0.2001 -6.4647 -0.8144 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008126151.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:11 Heat of formation + Delta-G solvation = 28.365118 kcal Electronic energy + Delta-G solvation = -24608.440276 eV Core-core repulsion = 20941.947606 eV Total energy + Delta-G solvation = -3666.492670 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.09812 -39.76242 -37.41897 -35.99736 -34.46043 -33.96769 -32.96285 -31.85972 -29.61533 -29.02976 -28.84775 -27.91171 -25.79047 -24.30146 -21.87809 -21.32070 -20.69476 -20.23659 -19.58448 -17.86734 -17.40252 -17.16996 -16.76255 -16.21847 -15.61044 -15.18157 -14.55725 -14.28234 -13.92765 -13.82069 -13.70796 -13.39128 -13.28437 -13.07771 -12.87197 -12.71149 -12.61130 -12.49189 -12.14645 -12.12007 -11.71421 -11.48396 -11.37120 -11.17711 -10.98566 -10.91025 -10.74954 -10.06361 -9.99616 -9.51710 -9.46828 -9.34952 -9.09320 -8.88561 -7.57014 -6.88495 -6.63760 -4.36178 1.26045 1.99081 2.52354 2.91148 2.99433 3.06604 3.08978 3.14188 3.31757 3.69312 3.96697 4.00411 4.24266 4.60724 4.67857 4.76388 4.87996 5.01518 5.08824 5.14041 5.19993 5.25543 5.35134 5.43059 5.50521 5.55195 5.64740 5.70703 5.84097 5.92518 6.10317 6.16896 6.42536 6.73554 6.89658 7.05172 7.18983 7.27810 7.61873 7.72507 7.84747 8.04687 8.09568 8.24153 8.29636 8.60532 8.72620 8.91106 8.98179 10.27367 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.032662 B = 0.002243 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.070018 B =12477.611995 C =12811.340116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.024 3.976 3 N -0.371 5.371 4 O 0.094 5.906 5 C -0.031 4.031 6 C -0.076 4.076 7 C -0.196 4.196 8 C -0.025 4.025 9 C -0.133 4.133 10 C 0.498 3.502 11 O -0.532 6.532 12 N -0.652 5.652 13 C 0.003 3.997 14 C -0.121 4.121 15 C -0.142 4.142 16 C 0.099 3.901 17 C -0.460 4.460 18 H 0.076 0.924 19 C 0.069 3.931 20 N -0.812 5.812 21 Si 0.915 3.085 22 H -0.262 1.262 23 H -0.275 1.275 24 H -0.274 1.274 25 C -0.206 4.206 26 C -0.085 4.085 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.395 0.605 38 H 0.091 0.909 39 H 0.132 0.868 40 H 0.277 0.723 41 H 0.096 0.904 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.875 17.295 2.402 17.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.135 4.135 3 N -0.077 5.077 4 O 0.029 5.971 5 C -0.094 4.094 6 C -0.133 4.133 7 C -0.200 4.200 8 C -0.063 4.063 9 C -0.173 4.173 10 C 0.284 3.716 11 O -0.409 6.409 12 N -0.295 5.295 13 C -0.090 4.090 14 C -0.141 4.141 15 C -0.162 4.162 16 C 0.097 3.903 17 C -0.491 4.491 18 H 0.094 0.906 19 C -0.146 4.146 20 N -0.439 5.439 21 Si 0.740 3.260 22 H -0.186 1.186 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.226 4.226 26 C -0.105 4.105 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.229 0.771 38 H 0.109 0.891 39 H 0.150 0.850 40 H 0.088 0.912 41 H 0.114 0.886 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.785 18.120 3.060 18.586 hybrid contribution 0.056 -1.318 -0.421 1.385 sum 2.841 16.802 2.639 17.243 Atomic orbital electron populations 1.20191 0.85961 1.03828 1.03520 1.23489 0.98951 0.88513 1.02577 1.73830 0.89336 1.24016 1.20504 1.84788 1.21614 1.22622 1.68045 1.24297 0.98355 0.83699 1.03035 1.20382 0.89919 0.98765 1.04255 1.21036 0.91547 0.97654 1.09782 1.19605 1.03754 0.87051 0.95885 1.21609 1.03553 0.93501 0.98672 1.20531 0.78096 0.88719 0.84211 1.90692 1.50490 1.68501 1.31198 1.43034 1.69543 1.08842 1.08092 1.17279 1.07686 0.81586 1.02417 1.20320 1.01032 0.94557 0.98228 1.21199 1.02674 0.92209 1.00086 1.17736 0.90338 0.93070 0.89179 1.19538 1.01183 0.91107 1.37278 0.90564 1.25887 0.94502 1.01531 0.92678 1.69770 1.06348 1.36501 1.31317 0.86147 0.79513 0.81745 0.78575 1.18584 1.20004 1.19980 1.20816 1.08246 0.93482 1.00051 1.20393 0.97204 0.95403 0.97517 0.90098 0.90585 0.89809 0.89287 0.89882 0.88742 0.89592 0.89585 0.89217 0.89098 0.77115 0.89125 0.85038 0.91207 0.88599 0.87469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.39 36.01 0.37 -0.28 16 2 C 0.02 0.26 7.33 -82.10 -0.60 -0.34 16 3 N -0.37 -4.64 12.07 33.42 0.40 -4.23 16 4 O 0.09 1.08 11.20 17.17 0.19 1.27 16 5 C -0.03 -0.30 7.49 -35.30 -0.26 -0.56 16 6 C -0.08 -0.48 10.30 36.01 0.37 -0.11 16 7 C -0.20 -2.05 5.58 -104.42 -0.58 -2.63 16 8 C -0.02 -0.26 4.83 -27.88 -0.13 -0.40 16 9 C -0.13 -1.41 5.68 -27.88 -0.16 -1.57 16 10 C 0.50 7.84 7.66 -10.98 -0.08 7.75 16 11 O -0.53 -10.58 13.40 5.56 0.07 -10.50 16 12 N -0.65 -10.73 5.30 -9.74 -0.05 -10.79 16 13 C 0.00 0.06 6.31 -83.57 -0.53 -0.47 16 14 C -0.12 -2.70 9.90 -39.79 -0.39 -3.09 16 15 C -0.14 -3.59 8.62 -39.25 -0.34 -3.93 16 16 C 0.10 2.63 5.55 -106.80 -0.59 2.04 16 17 C -0.46 -12.17 9.02 -37.85 -0.34 -12.52 16 18 H 0.08 1.94 7.85 -52.48 -0.41 1.53 16 19 C 0.07 1.73 5.42 -17.33 -0.09 1.63 16 20 N -0.81 -20.92 10.60 55.55 0.59 -20.33 16 21 Si 0.92 18.85 29.56 -169.99 -5.03 13.82 16 22 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 25 C -0.21 -5.15 9.74 -39.26 -0.38 -5.53 16 26 C -0.09 -2.00 8.61 -39.79 -0.34 -2.34 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.58 7.43 -51.93 -0.39 0.19 16 33 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 34 H 0.09 0.96 7.40 -51.93 -0.38 0.57 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.40 5.02 8.82 -40.82 -0.36 4.66 16 38 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 39 H 0.13 3.45 6.13 -52.49 -0.32 3.13 16 40 H 0.28 6.51 8.30 -40.82 -0.34 6.18 16 41 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 42 H 0.11 2.46 6.22 -52.48 -0.33 2.14 16 LS Contribution 359.23 15.07 5.41 5.41 Total: -1.00 -31.43 359.23 -8.05 -39.48 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.55 Total: 8.20 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -4.09 Total: -22.33 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.94 Total: -35.35 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.27 Total: -9.23 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.43 -8.05 -39.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008126151.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.844 kcal (2) G-P(sol) polarization free energy of solvation -31.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds