Wall clock time and date at job start Tue Mar 31 2020 11:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30170 * 126.80029 * 2 1 4 4 O 1.20926 * 111.60481 * 180.02562 * 3 2 1 5 5 C 1.34041 * 111.56244 * 359.76302 * 4 3 2 6 6 C 1.50708 * 126.77515 * 180.28838 * 5 4 3 7 7 C 1.35444 * 106.45028 * 0.38145 * 5 4 3 8 8 C 1.50702 * 128.00977 * 179.90921 * 7 5 4 9 9 C 1.52994 * 109.47070 * 269.68035 * 8 7 5 10 10 C 1.50707 * 109.46811 * 179.97438 * 9 8 7 11 11 O 1.21278 * 119.99923 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99820 * 179.97438 * 10 9 8 13 13 C 1.39238 * 119.99666 * 175.71027 * 12 10 9 14 14 C 1.39478 * 119.83173 * 215.01020 * 13 12 10 15 15 C 1.36379 * 120.17201 * 179.75846 * 14 13 12 16 16 C 1.40874 * 119.82029 * 0.52144 * 15 14 13 17 17 C 1.41151 * 120.15786 * 179.71874 * 16 15 14 18 18 H 1.08007 * 119.99861 * 214.80113 * 17 16 15 19 19 C 1.39909 * 120.00684 * 34.79914 * 17 16 15 20 20 N 1.30877 * 119.99506 * 355.56314 * 19 17 16 21 21 Si 1.86797 * 120.00452 * 175.55823 * 19 17 16 22 22 H 1.48502 * 109.47144 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46921 * 120.00024 * 21 19 17 24 24 H 1.48499 * 109.47188 * 240.00305 * 21 19 17 25 25 C 1.40866 * 119.67865 * 359.73530 * 16 15 14 26 26 C 1.36376 * 119.82261 * 359.97438 * 25 16 15 27 27 H 1.08997 * 109.46765 * 269.97374 * 1 2 3 28 28 H 1.09002 * 109.47024 * 29.97452 * 1 2 3 29 29 H 1.09001 * 109.47308 * 149.97209 * 1 2 3 30 30 H 1.09002 * 109.47227 * 270.11135 * 6 5 4 31 31 H 1.08998 * 109.46657 * 30.11116 * 6 5 4 32 32 H 1.08999 * 109.46805 * 150.11020 * 6 5 4 33 33 H 1.09004 * 109.47157 * 149.67838 * 8 7 5 34 34 H 1.09006 * 109.46804 * 29.68220 * 8 7 5 35 35 H 1.08997 * 109.47363 * 299.99609 * 9 8 7 36 36 H 1.08994 * 109.47035 * 60.00351 * 9 8 7 37 37 H 0.96994 * 120.00374 * 355.71211 * 12 10 9 38 38 H 1.08005 * 119.91748 * 0.02742 * 14 13 12 39 39 H 1.07993 * 120.09182 * 180.25817 * 15 14 13 40 40 H 0.96993 * 119.99670 * 180.02562 * 20 19 17 41 41 H 1.07998 * 120.09116 * 179.97438 * 25 16 15 42 42 H 1.08008 * 119.91294 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 -0.0005 5 6 3.6024 -0.6068 0.0042 6 6 4.9022 -1.3696 0.0113 7 6 2.3540 -1.1321 -0.0006 8 6 1.9591 -2.5864 -0.0002 9 6 1.8243 -3.0786 -1.4425 10 6 1.4299 -4.5332 -1.4421 11 8 1.2719 -5.1183 -0.3916 12 7 1.2520 -5.1835 -2.6091 13 6 0.9755 -6.5482 -2.6104 14 6 1.4801 -7.3574 -3.6283 15 6 1.2177 -8.6957 -3.6337 16 6 0.4256 -9.2584 -2.6136 17 6 0.1446 -10.6416 -2.6156 18 1 -0.8120 -10.9989 -2.2636 19 6 1.1051 -11.5501 -3.0734 20 7 2.2297 -11.1131 -3.5805 21 14 0.7825 -13.3865 -2.9608 22 1 -0.5528 -13.6183 -2.3537 23 1 0.8166 -13.9794 -4.3219 24 1 1.8270 -14.0218 -2.1178 25 6 -0.0850 -8.4338 -1.5920 26 6 0.1910 -7.0983 -1.5968 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3634 -0.8897 -0.5143 30 1 5.2202 -1.5550 -1.0147 31 1 5.6636 -0.7851 0.5277 32 1 4.7627 -2.3202 0.5259 33 1 1.0054 -2.7038 0.5144 34 1 2.7232 -3.1702 0.5131 35 1 1.0601 -2.4949 -1.9558 36 1 2.7779 -2.9613 -1.9571 37 1 1.3165 -4.7010 -3.4480 38 1 2.0838 -6.9237 -4.4118 39 1 1.6125 -9.3217 -4.4201 40 1 2.8955 -11.7428 -3.8982 41 1 -0.6933 -8.8581 -0.8070 42 1 -0.2001 -6.4647 -0.8144 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008126151.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:07 Heat of formation + Delta-G solvation = 10.922427 kcal Electronic energy + Delta-G solvation = -24609.196648 eV Core-core repulsion = 20941.947606 eV Total energy + Delta-G solvation = -3667.249042 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -45.90723 -41.19453 -39.11985 -36.90344 -36.08796 -34.74737 -34.65552 -32.77492 -31.46103 -30.71313 -29.60534 -28.67616 -27.17603 -25.66442 -23.39480 -22.71702 -22.10850 -21.08645 -20.91472 -19.26302 -18.72754 -18.25646 -18.05177 -17.53761 -16.99044 -16.66273 -15.74785 -15.46566 -15.36206 -14.99241 -14.68079 -14.42037 -14.30476 -14.05166 -13.95580 -13.83934 -13.66895 -13.56537 -13.47018 -13.25592 -13.16400 -12.92301 -12.83342 -12.73638 -12.46519 -12.24086 -11.75665 -11.72370 -11.36845 -11.19721 -10.85438 -10.73559 -10.53774 -10.05125 -9.44542 -8.70217 -8.49366 -6.31739 0.49795 0.81687 1.15739 1.19415 1.40215 1.45020 1.54937 1.85088 2.18799 2.24819 2.43963 2.81939 3.24459 3.54026 3.67818 3.76115 3.90086 4.04231 4.30248 4.34242 4.41776 4.43826 4.54052 4.63563 4.65490 4.70785 4.73375 4.82807 4.92335 4.96658 5.05815 5.10302 5.16516 5.17727 5.18132 5.36295 5.37731 5.46899 5.71703 5.93580 6.05053 6.16325 6.41351 6.69382 6.78007 6.98318 7.02176 7.31437 7.45199 8.43342 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.032662 B = 0.002243 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.070018 B =12477.611995 C =12811.340116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.018 3.982 3 N -0.400 5.400 4 O 0.082 5.918 5 C -0.022 4.022 6 C -0.078 4.078 7 C -0.208 4.208 8 C -0.017 4.017 9 C -0.118 4.118 10 C 0.499 3.501 11 O -0.574 6.574 12 N -0.647 5.647 13 C 0.023 3.977 14 C -0.120 4.120 15 C -0.160 4.160 16 C 0.065 3.935 17 C -0.498 4.498 18 H 0.071 0.929 19 C 0.027 3.973 20 N -0.841 5.841 21 Si 0.987 3.013 22 H -0.261 1.261 23 H -0.263 1.263 24 H -0.269 1.269 25 C -0.222 4.222 26 C -0.097 4.097 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.418 0.582 38 H 0.125 0.875 39 H 0.118 0.882 40 H 0.284 0.716 41 H 0.094 0.906 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.765 18.415 1.776 18.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.140 4.140 3 N -0.109 5.109 4 O 0.020 5.980 5 C -0.085 4.085 6 C -0.135 4.135 7 C -0.212 4.212 8 C -0.056 4.056 9 C -0.157 4.157 10 C 0.289 3.711 11 O -0.453 6.453 12 N -0.292 5.292 13 C -0.071 4.071 14 C -0.140 4.140 15 C -0.180 4.180 16 C 0.063 3.937 17 C -0.529 4.529 18 H 0.089 0.911 19 C -0.185 4.185 20 N -0.470 5.470 21 Si 0.809 3.191 22 H -0.185 1.185 23 H -0.188 1.188 24 H -0.194 1.194 25 C -0.242 4.242 26 C -0.117 4.117 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.124 0.876 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.255 0.745 38 H 0.143 0.857 39 H 0.136 0.864 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.693 19.294 2.410 19.791 hybrid contribution -0.187 -1.470 -0.176 1.493 sum 3.506 17.823 2.234 18.302 Atomic orbital electron populations 1.20304 0.84523 1.04611 1.04206 1.23936 1.00066 0.88443 1.01593 1.73831 0.89855 1.24987 1.22229 1.84761 1.21383 1.23517 1.68351 1.24883 0.99451 0.83152 1.01003 1.20582 0.88702 0.98591 1.05601 1.20982 0.91842 0.97216 1.11179 1.19479 1.03149 0.87125 0.95826 1.21588 1.05561 0.89338 0.99232 1.21441 0.76299 0.90436 0.82966 1.90687 1.51997 1.69907 1.32750 1.42999 1.69491 1.06867 1.09851 1.17333 1.05111 0.84000 1.00609 1.20577 1.00706 0.93537 0.99172 1.21184 1.03441 0.93584 0.99818 1.18041 0.91737 0.93704 0.90215 1.19738 1.01788 0.91920 1.39415 0.91102 1.26720 0.93933 1.05950 0.91850 1.69829 1.07073 1.38192 1.31863 0.85073 0.79261 0.75816 0.78991 1.18502 1.18766 1.19423 1.20945 1.08729 0.94421 1.00089 1.20525 0.97878 0.94882 0.98407 0.89448 0.90042 0.88752 0.87563 0.88408 0.88358 0.90527 0.90151 0.86656 0.86400 0.74465 0.85716 0.86438 0.90521 0.88745 0.87192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 10.39 71.24 0.74 -0.45 16 2 C 0.02 0.37 7.33 43.58 0.32 0.69 16 3 N -0.40 -9.55 12.07 -49.55 -0.60 -10.15 16 4 O 0.08 1.76 11.20 71.62 0.80 2.56 16 5 C -0.02 -0.37 7.49 25.04 0.19 -0.18 16 6 C -0.08 -0.76 10.30 71.24 0.73 -0.03 16 7 C -0.21 -3.89 5.58 -19.74 -0.11 -4.00 16 8 C -0.02 -0.33 4.83 29.85 0.14 -0.19 16 9 C -0.12 -2.05 5.68 29.85 0.17 -1.88 16 10 C 0.50 14.40 7.66 87.66 0.67 15.08 16 11 O -0.57 -22.10 13.40 -3.02 -0.04 -22.14 16 12 N -0.65 -19.39 5.30 -303.11 -1.61 -21.00 16 13 C 0.02 0.96 6.31 38.56 0.24 1.21 16 14 C -0.12 -5.20 9.90 22.13 0.22 -4.98 16 15 C -0.16 -8.25 8.62 22.48 0.19 -8.06 16 16 C 0.07 3.58 5.55 -21.28 -0.12 3.46 16 17 C -0.50 -27.32 9.02 23.39 0.21 -27.11 16 18 H 0.07 3.78 7.85 -2.91 -0.02 3.76 16 19 C 0.03 1.39 5.42 85.24 0.46 1.85 16 20 N -0.84 -44.14 10.60 21.82 0.23 -43.91 16 21 Si 0.99 39.06 29.56 68.60 2.03 41.08 16 22 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 23 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 24 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 25 C -0.22 -11.44 9.74 22.48 0.22 -11.22 16 26 C -0.10 -4.54 8.61 22.13 0.19 -4.35 16 27 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.10 0.93 7.43 -2.39 -0.02 0.91 16 33 H 0.08 1.61 8.10 -2.38 -0.02 1.59 16 34 H 0.08 1.63 7.40 -2.38 -0.02 1.61 16 35 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.42 8.90 8.82 -92.71 -0.82 8.09 16 38 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 39 H 0.12 6.32 6.13 -2.91 -0.02 6.31 16 40 H 0.28 13.49 8.30 -92.71 -0.77 12.72 16 41 H 0.09 4.70 8.06 -2.91 -0.02 4.68 16 42 H 0.11 5.06 6.22 -2.91 -0.02 5.04 16 Total: -1.00 -70.45 359.23 5.53 -64.92 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: 0.24 Total: 28.78 kcal Atomic # 6 Polarization: -44.63 SS G_CDS: 4.48 Total: -40.15 kcal Atomic # 7 Polarization: -73.08 SS G_CDS: -1.97 Total: -75.06 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: 0.76 Total: -19.58 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.08 kcal Total: -70.45 5.53 -64.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008126151.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.843 kcal (2) G-P(sol) polarization free energy of solvation -70.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds