Wall clock time and date at job start Tue Mar 31 2020 11:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30178 * 126.79972 * 2 1 4 4 O 1.20923 * 111.60385 * 180.25438 * 3 2 1 5 5 C 1.34039 * 111.56601 * 359.73710 * 4 3 2 6 6 C 1.50702 * 126.77425 * 180.02562 * 5 4 3 7 7 C 1.35447 * 106.45018 * 0.02562 * 5 4 3 8 8 C 1.50698 * 128.01169 * 179.97438 * 7 5 4 9 9 N 1.46497 * 109.47445 * 89.99987 * 8 7 5 10 10 C 1.46504 * 119.99673 * 270.00489 * 9 8 7 11 11 C 1.34774 * 120.00286 * 90.00065 * 9 8 7 12 12 O 1.21547 * 119.99469 * 355.35910 * 11 9 8 13 13 C 1.47878 * 120.00065 * 175.36122 * 11 9 8 14 14 C 1.39928 * 120.02582 * 221.01641 * 13 11 9 15 15 C 1.38327 * 120.36006 * 179.74172 * 14 13 11 16 16 C 1.37753 * 120.40859 * 0.56047 * 15 14 13 17 17 C 1.40747 * 120.04348 * 359.69952 * 16 15 14 18 18 C 1.41440 * 120.17940 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99785 * 154.73852 * 18 17 16 20 20 C 1.39938 * 119.99928 * 334.73247 * 18 17 16 21 21 N 1.30825 * 119.99622 * 160.86480 * 20 18 17 22 22 Si 1.86802 * 120.00044 * 340.86685 * 20 18 17 23 23 H 1.48499 * 109.47105 * 95.27879 * 22 20 18 24 24 H 1.48496 * 109.46684 * 215.27763 * 22 20 18 25 25 H 1.48502 * 109.47186 * 335.27654 * 22 20 18 26 26 C 1.38991 * 120.02825 * 41.29554 * 13 11 9 27 27 H 1.09003 * 109.47190 * 270.16668 * 1 2 3 28 28 H 1.08997 * 109.47440 * 30.17086 * 1 2 3 29 29 H 1.08998 * 109.46650 * 150.17084 * 1 2 3 30 30 H 1.09002 * 109.47111 * 269.99902 * 6 5 4 31 31 H 1.08998 * 109.47674 * 30.00460 * 6 5 4 32 32 H 1.09000 * 109.46959 * 150.00452 * 6 5 4 33 33 H 1.09008 * 109.46898 * 329.99383 * 8 7 5 34 34 H 1.09004 * 109.46923 * 210.00395 * 8 7 5 35 35 H 1.08998 * 109.47429 * 94.23407 * 10 9 8 36 36 H 1.09001 * 109.46570 * 214.23507 * 10 9 8 37 37 H 1.09003 * 109.47146 * 334.22814 * 10 9 8 38 38 H 1.08001 * 119.81401 * 0.02562 * 14 13 11 39 39 H 1.07991 * 119.79619 * 180.28350 * 15 14 13 40 40 H 1.07998 * 119.97798 * 179.71703 * 16 15 14 41 41 H 0.97002 * 119.99590 * 180.02562 * 21 20 18 42 42 H 1.08000 * 120.20293 * 359.95626 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0050 5 6 3.6025 -0.6067 -0.0033 6 6 4.9022 -1.3694 -0.0076 7 6 2.3540 -1.1320 0.0029 8 6 1.9592 -2.5863 0.0066 9 7 1.8374 -3.0559 1.3889 10 6 3.0010 -3.6230 2.0751 11 6 0.6550 -2.9660 2.0295 12 8 -0.2877 -2.4193 1.4912 13 6 0.5047 -3.5326 3.3872 14 6 -0.6622 -4.2234 3.7323 15 6 -0.8079 -4.7607 4.9986 16 6 0.1887 -4.6123 5.9380 17 6 1.3673 -3.9159 5.6108 18 6 2.3926 -3.7623 6.5729 19 1 3.4139 -3.6137 6.2546 20 6 2.0837 -3.8026 7.9372 21 7 3.0256 -4.0368 8.8144 22 14 0.3266 -3.5220 8.5057 23 1 -0.3517 -4.8312 8.6817 24 1 0.3354 -2.7913 9.7984 25 1 -0.4006 -2.7204 7.4889 26 6 1.5199 -3.3743 4.3232 27 1 -0.3634 0.0030 1.0277 28 1 -0.3634 0.8884 -0.5165 29 1 -0.3632 -0.8915 -0.5112 30 1 5.2112 -1.5550 -1.0363 31 1 5.6683 -0.7849 0.5019 32 1 4.7674 -2.3200 0.5083 33 1 2.7206 -3.1708 -0.5100 34 1 1.0028 -2.7044 -0.5029 35 1 3.5022 -2.8419 2.6467 36 1 2.6747 -4.4145 2.7497 37 1 3.6917 -4.0347 1.3392 38 1 -1.4514 -4.3416 3.0046 39 1 -1.7104 -5.2961 5.2538 40 1 0.0657 -5.0307 6.9259 41 1 2.8114 -4.0651 9.7601 42 1 2.4207 -2.8386 4.0624 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052640466.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:10 Heat of formation + Delta-G solvation = 47.171945 kcal Electronic energy + Delta-G solvation = -26176.741095 eV Core-core repulsion = 22511.063950 eV Total energy + Delta-G solvation = -3665.677145 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -44.85842 -39.77950 -37.48211 -35.94996 -34.49714 -33.72799 -33.40070 -30.74241 -30.46411 -28.73694 -28.47324 -26.86939 -26.17166 -25.23335 -22.83065 -21.57717 -20.76680 -20.17624 -19.25529 -17.66183 -17.46809 -16.97642 -16.24215 -16.14565 -15.66655 -15.25794 -14.76694 -14.35615 -13.96638 -13.76661 -13.49452 -13.40512 -13.12648 -13.00749 -12.91242 -12.74323 -12.43314 -12.42099 -12.26328 -12.22088 -12.02254 -11.76450 -11.58824 -11.14617 -10.87018 -10.77021 -10.56784 -10.03874 -9.83636 -9.74528 -9.52754 -9.26219 -8.98774 -8.56112 -7.88426 -7.80303 -7.08888 -4.61974 1.43646 1.97559 2.23400 2.48602 3.01502 3.10911 3.14715 3.22798 3.32456 3.47021 3.87581 4.27315 4.38329 4.48062 4.63712 4.95532 5.13140 5.19511 5.22022 5.26875 5.31380 5.37577 5.46114 5.65337 5.68046 5.73264 5.76736 5.92198 5.92845 6.00052 6.04780 6.14341 6.30902 6.36009 6.53408 6.62794 6.72170 6.92288 7.16895 7.37001 7.43159 7.65723 7.69852 7.86229 8.18936 8.35233 8.45473 8.56564 8.65001 9.92781 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.016809 B = 0.003933 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.410166 B = 7116.873295 C = 7682.593968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.044 3.956 3 N -0.375 5.375 4 O 0.092 5.908 5 C -0.024 4.024 6 C -0.076 4.076 7 C -0.218 4.218 8 C 0.196 3.804 9 N -0.612 5.612 10 C 0.075 3.925 11 C 0.568 3.432 12 O -0.541 6.541 13 C -0.097 4.097 14 C -0.193 4.193 15 C -0.082 4.082 16 C -0.225 4.225 17 C 0.085 3.915 18 C -0.443 4.443 19 H 0.092 0.908 20 C 0.085 3.915 21 N -0.801 5.801 22 Si 0.912 3.088 23 H -0.270 1.270 24 H -0.291 1.291 25 H -0.243 1.243 26 C -0.182 4.182 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.287 0.713 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.488 0.691 -14.209 14.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.115 4.115 3 N -0.083 5.083 4 O 0.029 5.971 5 C -0.088 4.088 6 C -0.133 4.133 7 C -0.223 4.223 8 C 0.073 3.927 9 N -0.345 5.345 10 C -0.068 4.068 11 C 0.360 3.640 12 O -0.419 6.419 13 C -0.100 4.100 14 C -0.213 4.213 15 C -0.100 4.100 16 C -0.244 4.244 17 C 0.082 3.918 18 C -0.470 4.470 19 H 0.110 0.890 20 C -0.136 4.136 21 N -0.424 5.424 22 Si 0.739 3.261 23 H -0.196 1.196 24 H -0.218 1.218 25 H -0.166 1.166 26 C -0.202 4.202 27 H 0.104 0.896 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.076 0.924 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.949 2.270 -14.232 14.543 hybrid contribution -0.602 -0.633 0.638 1.081 sum 1.348 1.637 -13.594 13.758 Atomic orbital electron populations 1.20153 0.85411 1.02732 1.04184 1.23548 0.99225 0.88114 1.00596 1.73832 0.89201 1.23992 1.21259 1.84784 1.21855 1.22396 1.68053 1.24273 0.98072 0.84074 1.02407 1.20392 0.90185 0.98865 1.03881 1.21401 0.91714 0.98386 1.10805 1.19507 1.02788 0.86758 0.83639 1.47804 1.10972 1.62413 1.13356 1.22196 0.87460 0.99438 0.97686 1.18912 0.81334 0.77817 0.85981 1.90662 1.39510 1.43556 1.68156 1.19349 0.96762 1.01988 0.91935 1.20302 0.97136 1.06794 0.97107 1.20533 0.97458 0.98603 0.93412 1.21165 0.97344 1.06816 0.99093 1.17626 0.91908 0.89734 0.92528 1.19485 0.96026 1.41943 0.89596 0.89019 1.26172 0.99846 0.90795 0.96739 1.69685 1.35885 1.32939 1.03918 0.86330 0.82224 0.79584 0.78003 1.19607 1.21847 1.16640 1.21319 0.98577 1.05420 0.94834 0.89577 0.91648 0.89685 0.89473 0.89686 0.89030 0.89440 0.88759 0.92422 0.89001 0.91841 0.88055 0.88222 0.88043 0.90241 0.87117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 9.05 36.01 0.33 -0.65 16 2 C 0.04 0.69 7.33 -82.10 -0.60 0.09 16 3 N -0.38 -6.09 12.07 33.42 0.40 -5.69 16 4 O 0.09 1.33 11.20 17.18 0.19 1.52 16 5 C -0.02 -0.28 7.49 -35.30 -0.26 -0.55 16 6 C -0.08 -0.56 10.25 36.01 0.37 -0.19 16 7 C -0.22 -2.94 5.90 -104.42 -0.62 -3.56 16 8 C 0.20 2.40 5.66 -5.20 -0.03 2.37 16 9 N -0.61 -9.00 2.86 -184.06 -0.53 -9.53 16 10 C 0.07 0.95 8.29 59.85 0.50 1.45 16 11 C 0.57 10.56 7.32 -12.32 -0.09 10.47 16 12 O -0.54 -10.79 14.03 5.32 0.07 -10.72 16 13 C -0.10 -2.00 5.16 -105.04 -0.54 -2.55 16 14 C -0.19 -4.01 9.65 -38.92 -0.38 -4.38 16 15 C -0.08 -1.71 10.01 -39.73 -0.40 -2.11 16 16 C -0.22 -5.15 7.15 -38.81 -0.28 -5.43 16 17 C 0.09 2.02 5.21 -106.87 -0.56 1.46 16 18 C -0.44 -11.18 9.58 -37.73 -0.36 -11.54 16 19 H 0.09 2.38 8.06 -52.49 -0.42 1.96 16 20 C 0.08 2.11 5.42 -17.34 -0.09 2.01 16 21 N -0.80 -20.32 13.93 55.55 0.77 -19.54 16 22 Si 0.91 20.13 24.42 -169.99 -4.15 15.98 16 23 H -0.27 -5.74 6.65 56.52 0.38 -5.36 16 24 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.24 -5.59 6.77 56.52 0.38 -5.21 16 26 C -0.18 -3.89 7.34 -38.44 -0.28 -4.17 16 27 H 0.09 1.41 7.52 -51.93 -0.39 1.02 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 1.17 7.21 -51.93 -0.37 0.80 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.61 6.73 -51.93 -0.35 0.27 16 33 H 0.09 0.77 7.80 -51.92 -0.41 0.36 16 34 H 0.09 1.20 7.00 -51.93 -0.36 0.84 16 35 H 0.06 0.76 6.92 -51.93 -0.36 0.40 16 36 H 0.09 1.35 5.90 -51.93 -0.31 1.04 16 37 H 0.06 0.57 7.25 -51.93 -0.38 0.19 16 38 H 0.10 1.98 8.06 -52.49 -0.42 1.55 16 39 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.10 2.32 4.16 -52.49 -0.22 2.10 16 41 H 0.29 6.61 8.30 -40.82 -0.34 6.27 16 42 H 0.11 2.21 5.52 -52.49 -0.29 1.92 16 LS Contribution 342.73 15.07 5.16 5.16 Total: -1.00 -29.30 342.73 -6.51 -35.81 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -5.15 Total: 4.28 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -3.30 Total: -17.28 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.65 Total: -34.76 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.27 Total: -9.20 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.15 Total: 15.98 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.30 -6.51 -35.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052640466.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.983 kcal (2) G-P(sol) polarization free energy of solvation -29.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds