Wall clock time and date at job start Tue Mar 31 2020 11:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30178 * 126.79972 * 2 1 4 4 O 1.20923 * 111.60385 * 180.25438 * 3 2 1 5 5 C 1.34039 * 111.56601 * 359.73710 * 4 3 2 6 6 C 1.50702 * 126.77425 * 180.02562 * 5 4 3 7 7 C 1.35447 * 106.45018 * 0.02562 * 5 4 3 8 8 C 1.50698 * 128.01169 * 179.97438 * 7 5 4 9 9 N 1.46497 * 109.47445 * 89.99987 * 8 7 5 10 10 C 1.46504 * 119.99673 * 270.00489 * 9 8 7 11 11 C 1.34774 * 120.00286 * 90.00065 * 9 8 7 12 12 O 1.21547 * 119.99469 * 355.35910 * 11 9 8 13 13 C 1.47878 * 120.00065 * 175.36122 * 11 9 8 14 14 C 1.39928 * 120.02582 * 221.01641 * 13 11 9 15 15 C 1.38327 * 120.36006 * 179.74172 * 14 13 11 16 16 C 1.37753 * 120.40859 * 0.56047 * 15 14 13 17 17 C 1.40747 * 120.04348 * 359.69952 * 16 15 14 18 18 C 1.41440 * 120.17940 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99785 * 154.73852 * 18 17 16 20 20 C 1.39938 * 119.99928 * 334.73247 * 18 17 16 21 21 N 1.30825 * 119.99622 * 160.86480 * 20 18 17 22 22 Si 1.86802 * 120.00044 * 340.86685 * 20 18 17 23 23 H 1.48499 * 109.47105 * 95.27879 * 22 20 18 24 24 H 1.48496 * 109.46684 * 215.27763 * 22 20 18 25 25 H 1.48502 * 109.47186 * 335.27654 * 22 20 18 26 26 C 1.38991 * 120.02825 * 41.29554 * 13 11 9 27 27 H 1.09003 * 109.47190 * 270.16668 * 1 2 3 28 28 H 1.08997 * 109.47440 * 30.17086 * 1 2 3 29 29 H 1.08998 * 109.46650 * 150.17084 * 1 2 3 30 30 H 1.09002 * 109.47111 * 269.99902 * 6 5 4 31 31 H 1.08998 * 109.47674 * 30.00460 * 6 5 4 32 32 H 1.09000 * 109.46959 * 150.00452 * 6 5 4 33 33 H 1.09008 * 109.46898 * 329.99383 * 8 7 5 34 34 H 1.09004 * 109.46923 * 210.00395 * 8 7 5 35 35 H 1.08998 * 109.47429 * 94.23407 * 10 9 8 36 36 H 1.09001 * 109.46570 * 214.23507 * 10 9 8 37 37 H 1.09003 * 109.47146 * 334.22814 * 10 9 8 38 38 H 1.08001 * 119.81401 * 0.02562 * 14 13 11 39 39 H 1.07991 * 119.79619 * 180.28350 * 15 14 13 40 40 H 1.07998 * 119.97798 * 179.71703 * 16 15 14 41 41 H 0.97002 * 119.99590 * 180.02562 * 21 20 18 42 42 H 1.08000 * 120.20293 * 359.95626 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0050 5 6 3.6025 -0.6067 -0.0033 6 6 4.9022 -1.3694 -0.0076 7 6 2.3540 -1.1320 0.0029 8 6 1.9592 -2.5863 0.0066 9 7 1.8374 -3.0559 1.3889 10 6 3.0010 -3.6230 2.0751 11 6 0.6550 -2.9660 2.0295 12 8 -0.2877 -2.4193 1.4912 13 6 0.5047 -3.5326 3.3872 14 6 -0.6622 -4.2234 3.7323 15 6 -0.8079 -4.7607 4.9986 16 6 0.1887 -4.6123 5.9380 17 6 1.3673 -3.9159 5.6108 18 6 2.3926 -3.7623 6.5729 19 1 3.4139 -3.6137 6.2546 20 6 2.0837 -3.8026 7.9372 21 7 3.0256 -4.0368 8.8144 22 14 0.3266 -3.5220 8.5057 23 1 -0.3517 -4.8312 8.6817 24 1 0.3354 -2.7913 9.7984 25 1 -0.4006 -2.7204 7.4889 26 6 1.5199 -3.3743 4.3232 27 1 -0.3634 0.0030 1.0277 28 1 -0.3634 0.8884 -0.5165 29 1 -0.3632 -0.8915 -0.5112 30 1 5.2112 -1.5550 -1.0363 31 1 5.6683 -0.7849 0.5019 32 1 4.7674 -2.3200 0.5083 33 1 2.7206 -3.1708 -0.5100 34 1 1.0028 -2.7044 -0.5029 35 1 3.5022 -2.8419 2.6467 36 1 2.6747 -4.4145 2.7497 37 1 3.6917 -4.0347 1.3392 38 1 -1.4514 -4.3416 3.0046 39 1 -1.7104 -5.2961 5.2538 40 1 0.0657 -5.0307 6.9259 41 1 2.8114 -4.0651 9.7601 42 1 2.4207 -2.8386 4.0624 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052640466.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:08 Heat of formation + Delta-G solvation = 30.652615 kcal Electronic energy + Delta-G solvation = -26177.457427 eV Core-core repulsion = 22511.063950 eV Total energy + Delta-G solvation = -3666.393477 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -45.94833 -41.18685 -39.11736 -37.17226 -35.70625 -35.47794 -34.38189 -32.44287 -32.03311 -29.80369 -29.55427 -27.83896 -27.41012 -26.98463 -24.30173 -22.89077 -22.36588 -21.30226 -20.66324 -19.07066 -18.73617 -18.06889 -17.83251 -17.63490 -17.05345 -16.57096 -16.44472 -15.55627 -15.26754 -15.08020 -14.75196 -14.53279 -14.36453 -14.34291 -14.13312 -13.89735 -13.83961 -13.69938 -13.45973 -13.33909 -13.14760 -13.05809 -12.90868 -12.83714 -12.47984 -12.29463 -11.86436 -11.74046 -11.48214 -11.25561 -10.96028 -10.68090 -10.14730 -9.78093 -9.60070 -9.51472 -8.94007 -6.51154 0.31425 0.47820 0.74866 1.09032 1.24630 1.39973 1.46261 1.83397 2.08895 2.20437 2.24828 2.60622 3.21609 3.44485 3.53771 3.63442 3.87138 4.04701 4.22227 4.32172 4.38165 4.44330 4.48975 4.56711 4.60242 4.62955 4.69960 4.73121 4.74048 4.81605 4.87410 4.89728 4.96993 5.03895 5.15981 5.18935 5.28411 5.42517 5.57602 5.67836 5.76310 5.86733 6.10124 6.32079 6.32196 6.65048 6.78906 7.16795 7.30372 8.13189 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.016809 B = 0.003933 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.410166 B = 7116.873295 C = 7682.593968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.023 3.977 3 N -0.405 5.405 4 O 0.083 5.917 5 C -0.007 4.007 6 C -0.077 4.077 7 C -0.236 4.236 8 C 0.197 3.803 9 N -0.602 5.602 10 C 0.071 3.929 11 C 0.562 3.438 12 O -0.560 6.560 13 C -0.103 4.103 14 C -0.188 4.188 15 C -0.083 4.083 16 C -0.238 4.238 17 C 0.068 3.932 18 C -0.473 4.473 19 H 0.068 0.932 20 C 0.053 3.947 21 N -0.838 5.838 22 Si 0.957 3.043 23 H -0.255 1.255 24 H -0.281 1.281 25 H -0.259 1.259 26 C -0.177 4.177 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.133 0.867 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.132 0.868 40 H 0.101 0.899 41 H 0.295 0.705 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.611 -0.250 -16.073 16.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.136 4.136 3 N -0.115 5.115 4 O 0.021 5.979 5 C -0.072 4.072 6 C -0.134 4.134 7 C -0.241 4.241 8 C 0.075 3.925 9 N -0.333 5.333 10 C -0.071 4.071 11 C 0.352 3.648 12 O -0.440 6.440 13 C -0.106 4.106 14 C -0.208 4.208 15 C -0.101 4.101 16 C -0.258 4.258 17 C 0.066 3.934 18 C -0.502 4.502 19 H 0.087 0.913 20 C -0.163 4.163 21 N -0.464 5.464 22 Si 0.782 3.218 23 H -0.180 1.180 24 H -0.208 1.208 25 H -0.183 1.183 26 C -0.197 4.197 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.135 0.865 31 H 0.113 0.887 32 H 0.123 0.877 33 H 0.151 0.849 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.149 0.851 40 H 0.119 0.881 41 H 0.105 0.895 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.106 1.314 -16.108 16.299 hybrid contribution -0.620 -0.336 0.997 1.222 sum 1.486 0.978 -15.111 15.215 Atomic orbital electron populations 1.20050 0.85405 1.03510 1.02739 1.23867 0.99699 0.89089 1.00932 1.73820 0.89947 1.24946 1.22756 1.84742 1.21181 1.23892 1.68058 1.25098 0.99512 0.83096 0.99481 1.20699 0.87885 0.98701 1.06123 1.21554 0.91905 0.98506 1.12170 1.19770 1.04082 0.86569 0.82045 1.47812 1.10096 1.61199 1.14241 1.22306 0.87347 0.98668 0.98789 1.18676 0.82607 0.78076 0.85434 1.90659 1.40540 1.44477 1.68300 1.19665 0.96349 1.01439 0.93183 1.20661 0.97358 1.05426 0.97343 1.20866 0.98061 0.98297 0.92909 1.21303 0.97652 1.07096 0.99711 1.17787 0.92148 0.90336 0.93145 1.19482 0.95535 1.44550 0.90608 0.91338 1.26707 1.02482 0.90511 0.96614 1.69703 1.37229 1.34900 1.04520 0.85629 0.78872 0.79848 0.77433 1.18049 1.20832 1.18289 1.21425 0.99226 1.04871 0.94184 0.92003 0.90561 0.89234 0.86473 0.88696 0.87653 0.84910 0.89401 0.92879 0.91134 0.86968 0.86503 0.85058 0.88144 0.89476 0.86276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.73 9.05 71.24 0.64 -1.08 16 2 C 0.02 0.69 7.33 43.58 0.32 1.01 16 3 N -0.41 -13.04 12.07 -49.55 -0.60 -13.64 16 4 O 0.08 2.29 11.20 71.65 0.80 3.10 16 5 C -0.01 -0.15 7.49 25.04 0.19 0.03 16 6 C -0.08 -0.81 10.25 71.24 0.73 -0.08 16 7 C -0.24 -5.87 5.90 -19.74 -0.12 -5.99 16 8 C 0.20 4.18 5.66 85.63 0.48 4.67 16 9 N -0.60 -16.19 2.86 -854.53 -2.44 -18.63 16 10 C 0.07 1.60 8.29 127.77 1.06 2.66 16 11 C 0.56 20.08 7.32 86.80 0.64 20.71 16 12 O -0.56 -21.77 14.03 -3.86 -0.05 -21.83 16 13 C -0.10 -4.13 5.16 -20.14 -0.10 -4.24 16 14 C -0.19 -7.43 9.65 22.70 0.22 -7.21 16 15 C -0.08 -3.31 10.01 22.18 0.22 -3.09 16 16 C -0.24 -10.73 7.15 22.77 0.16 -10.57 16 17 C 0.07 3.27 5.21 -21.32 -0.11 3.16 16 18 C -0.47 -24.64 9.58 23.47 0.22 -24.42 16 19 H 0.07 3.74 8.06 -2.91 -0.02 3.72 16 20 C 0.05 2.70 5.42 85.25 0.46 3.16 16 21 N -0.84 -43.57 13.93 21.82 0.30 -43.27 16 22 Si 0.96 41.46 24.42 68.60 1.68 43.13 16 23 H -0.25 -10.32 6.65 99.48 0.66 -9.66 16 24 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 25 H -0.26 -11.73 6.77 99.48 0.67 -11.06 16 26 C -0.18 -7.56 7.34 23.01 0.17 -7.39 16 27 H 0.06 2.08 7.52 -2.39 -0.02 2.06 16 28 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.09 2.44 7.21 -2.39 -0.02 2.42 16 30 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.11 0.86 6.73 -2.39 -0.02 0.85 16 33 H 0.13 1.62 7.80 -2.38 -0.02 1.60 16 34 H 0.09 2.03 7.00 -2.39 -0.02 2.01 16 35 H 0.05 1.28 6.92 -2.39 -0.02 1.26 16 36 H 0.07 1.95 5.90 -2.39 -0.01 1.93 16 37 H 0.11 1.45 7.25 -2.39 -0.02 1.44 16 38 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 39 H 0.13 4.33 8.06 -2.92 -0.02 4.31 16 40 H 0.10 4.50 4.16 -2.91 -0.01 4.49 16 41 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 42 H 0.12 4.77 5.52 -2.91 -0.02 4.75 16 Total: -1.00 -65.74 342.73 5.86 -59.88 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.98 Total: 19.92 kcal Atomic # 6 Polarization: -33.86 SS G_CDS: 5.19 Total: -28.67 kcal Atomic # 7 Polarization: -72.80 SS G_CDS: -2.74 Total: -75.54 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: 0.75 Total: -18.73 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 1.68 Total: 43.13 kcal Total: -65.74 5.86 -59.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052640466.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.536 kcal (2) G-P(sol) polarization free energy of solvation -65.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds