Wall clock time and date at job start Tue Mar 31 2020 11:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34179 * 125.43967 * 2 1 4 4 C 1.47025 * 105.95634 * 179.75000 * 3 2 1 5 5 C 1.47373 * 127.19396 * 180.26384 * 4 3 2 6 6 O 1.21612 * 120.00516 * 143.97584 * 5 4 3 7 7 N 1.34781 * 119.99926 * 323.96995 * 5 4 3 8 8 C 1.46500 * 119.99922 * 3.97626 * 7 5 4 9 9 C 1.50702 * 109.46937 * 94.65397 * 8 7 5 10 10 H 1.08008 * 119.99694 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00142 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00069 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99988 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.46982 * 90.00382 * 13 11 9 15 15 H 1.48497 * 109.46943 * 210.00097 * 13 11 9 16 16 H 1.48502 * 109.47297 * 330.00291 * 13 11 9 17 17 C 1.46495 * 120.00017 * 183.98066 * 7 5 4 18 18 C 1.50703 * 109.47565 * 89.99766 * 17 7 5 19 19 C 1.38668 * 120.41909 * 269.72498 * 18 17 7 20 20 C 1.38632 * 118.41978 * 179.78107 * 19 18 17 21 21 C 1.38222 * 119.15930 * 0.50823 * 20 19 18 22 22 N 1.31862 * 120.76339 * 359.73133 * 21 20 19 23 23 C 1.31885 * 121.72509 * 359.97438 * 22 21 20 24 24 C 1.36414 * 105.61335 * 0.23078 * 4 3 2 25 25 C 1.50702 * 125.80420 * 180.02562 * 24 4 3 26 26 O 1.33660 * 108.39825 * 359.97438 * 24 4 3 27 27 H 1.09004 * 109.46794 * 89.99972 * 1 2 3 28 28 H 1.09000 * 109.47065 * 209.99449 * 1 2 3 29 29 H 1.08994 * 109.47195 * 330.00075 * 1 2 3 30 30 H 1.08003 * 127.02109 * 0.02562 * 3 2 1 31 31 H 1.08993 * 109.47106 * 214.64956 * 8 7 5 32 32 H 1.08998 * 109.47241 * 334.65775 * 8 7 5 33 33 H 0.96994 * 119.99969 * 179.97438 * 12 11 9 34 34 H 1.08994 * 109.47020 * 210.00007 * 17 7 5 35 35 H 1.09005 * 109.46997 * 329.99634 * 17 7 5 36 36 H 1.08001 * 120.79174 * 0.02562 * 19 18 17 37 37 H 1.08001 * 120.41865 * 180.21700 * 20 19 18 38 38 H 1.07998 * 119.61961 * 179.74599 * 21 20 19 39 39 H 1.08002 * 119.61544 * 179.97438 * 23 22 21 40 40 H 1.08995 * 109.47440 * 89.99664 * 25 24 4 41 41 H 1.08996 * 109.47441 * 210.00441 * 25 24 4 42 42 H 1.09004 * 109.46335 * 329.99882 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6711 0.6028 0.0062 5 6 4.9025 1.4124 0.0139 6 8 5.8754 1.0337 0.6376 7 7 4.9505 2.5726 -0.6703 8 6 3.7526 3.0724 -1.3498 9 6 3.0315 4.0415 -0.4486 10 1 3.4258 4.2625 0.5323 11 6 1.8684 4.6458 -0.8763 12 7 1.3879 4.3762 -2.0705 13 14 0.9741 5.8464 0.2410 14 1 1.4833 7.2203 -0.0003 15 1 -0.4818 5.8003 -0.0473 16 1 1.2101 5.4730 1.6588 17 6 6.2005 3.3339 -0.7347 18 6 6.9999 2.8868 -1.9315 19 6 7.9164 1.8525 -1.8170 20 6 8.6260 1.4718 -2.9454 21 6 8.4058 2.1383 -4.1362 22 7 7.5295 3.1211 -4.2069 23 6 6.8326 3.5059 -3.1554 24 6 3.5790 -0.7582 0.0040 25 6 4.7389 -1.7203 0.0090 26 8 2.2852 -1.0935 -0.0022 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3633 0.8899 0.5138 30 1 1.9595 2.1230 0.0004 31 1 4.0419 3.5790 -2.2705 32 1 3.0937 2.2369 -1.5862 33 1 0.5695 4.8011 -2.3713 34 1 5.9746 4.3963 -0.8250 35 1 6.7782 3.1611 0.1733 36 1 8.0708 1.3526 -0.8721 37 1 9.3453 0.6678 -2.8937 38 1 8.9575 1.8506 -5.0189 39 1 6.1241 4.3153 -3.2518 40 1 5.0132 -1.9535 1.0378 41 1 4.4533 -2.6366 -0.5075 42 1 5.5894 -1.2665 -0.4998 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072621366.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:12 Heat of formation + Delta-G solvation = -4.369076 kcal Electronic energy + Delta-G solvation = -26469.394129 eV Core-core repulsion = 22801.481997 eV Total energy + Delta-G solvation = -3667.912131 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.47359 -41.30978 -40.22070 -36.96694 -35.00071 -34.07963 -33.81910 -33.36300 -32.48770 -30.34439 -29.38588 -27.79940 -25.85662 -25.01033 -24.38860 -23.90382 -22.82043 -21.59292 -19.33576 -18.64950 -18.15589 -17.86400 -17.38111 -17.19114 -17.05139 -16.73869 -16.45755 -16.19277 -15.41203 -15.00534 -14.67565 -14.50247 -14.25981 -14.19710 -14.16573 -14.00811 -13.93839 -13.85799 -13.45974 -13.29115 -13.22347 -12.87060 -12.79740 -12.67465 -12.47962 -12.38085 -12.07112 -11.73239 -11.06366 -10.74137 -10.68842 -10.47102 -10.36578 -9.98676 -9.55136 -9.20549 -8.18655 -6.32851 0.11263 0.32500 0.48995 1.22023 1.40739 1.44293 1.52830 1.84970 2.15725 2.30975 2.48088 2.94602 3.10308 3.52881 3.62976 3.74761 3.87030 3.96691 4.03961 4.09525 4.11281 4.36748 4.45294 4.53879 4.62078 4.67086 4.70706 4.72446 4.72627 4.80372 4.84848 4.90082 4.99152 5.14062 5.18206 5.25671 5.30635 5.36900 5.61981 5.68814 5.77116 5.78876 6.06499 6.18910 6.50808 6.80062 7.00337 7.24746 7.38404 8.86327 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.009689 B = 0.006146 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.240893 B = 4554.862498 C = 6567.469314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.037 4.037 3 C -0.186 4.186 4 C -0.258 4.258 5 C 0.588 3.412 6 O -0.580 6.580 7 N -0.585 5.585 8 C 0.250 3.750 9 C -0.540 4.540 10 H 0.051 0.949 11 C 0.032 3.968 12 N -0.910 5.910 13 Si 0.949 3.051 14 H -0.276 1.276 15 H -0.277 1.277 16 H -0.273 1.273 17 C 0.162 3.838 18 C -0.156 4.156 19 C -0.065 4.065 20 C -0.167 4.167 21 C 0.089 3.911 22 N -0.511 5.511 23 C 0.100 3.900 24 C 0.048 3.952 25 C -0.063 4.063 26 O -0.178 6.178 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.164 0.836 31 H 0.013 0.987 32 H 0.037 0.963 33 H 0.268 0.732 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.138 0.862 37 H 0.170 0.830 38 H 0.187 0.813 39 H 0.146 0.854 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.232 -9.520 0.493 11.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.085 4.085 3 C -0.205 4.205 4 C -0.262 4.262 5 C 0.378 3.622 6 O -0.463 6.463 7 N -0.314 5.314 8 C 0.129 3.871 9 C -0.578 4.578 10 H 0.069 0.931 11 C -0.170 4.170 12 N -0.549 5.549 13 Si 0.774 3.226 14 H -0.202 1.202 15 H -0.202 1.202 16 H -0.198 1.198 17 C 0.039 3.961 18 C -0.159 4.159 19 C -0.091 4.091 20 C -0.186 4.186 21 C -0.068 4.068 22 N -0.220 5.220 23 C -0.056 4.056 24 C -0.005 4.005 25 C -0.119 4.119 26 O -0.075 6.075 27 H 0.105 0.895 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.182 0.818 31 H 0.031 0.969 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.156 0.844 37 H 0.187 0.813 38 H 0.204 0.796 39 H 0.163 0.837 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.309 -9.481 -0.132 11.389 hybrid contribution -0.614 1.035 1.150 1.665 sum 5.694 -8.445 1.018 10.237 Atomic orbital electron populations 1.20374 0.82286 1.04913 1.04327 1.22812 0.95331 0.82946 1.07391 1.23482 0.90827 1.01328 1.04825 1.21297 0.94543 0.94066 1.16321 1.17447 0.86007 0.80668 0.78079 1.90613 1.37922 1.72425 1.45368 1.48024 1.11889 1.21017 1.50458 1.19302 0.81597 0.94516 0.91635 1.21509 1.08777 1.25815 1.01712 0.93119 1.25524 0.97526 0.97730 0.96189 1.70025 1.22233 1.43667 1.18949 0.85700 0.78074 0.79521 0.79301 1.20214 1.20243 1.19762 1.20181 0.84116 0.96167 0.95671 1.21256 0.98737 0.98884 0.97055 1.21780 0.93193 0.93942 1.00192 1.22481 1.01333 1.01933 0.92838 1.23372 0.93914 0.90712 0.98822 1.67713 1.07324 1.15317 1.31672 1.22681 0.96366 0.98584 0.88012 1.23106 0.83947 0.93711 0.99706 1.20446 0.89940 0.96480 1.04990 1.83612 1.15881 1.35685 1.72339 0.89525 0.88439 0.89104 0.81846 0.96873 0.94560 0.92231 0.89235 0.89442 0.84394 0.81287 0.79610 0.83675 0.88250 0.87898 0.89911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.66 10.40 71.24 0.74 -0.92 16 2 C -0.04 -1.34 7.28 24.76 0.18 -1.16 16 3 C -0.19 -8.01 8.50 23.65 0.20 -7.80 16 4 C -0.26 -10.96 5.53 -18.99 -0.10 -11.06 16 5 C 0.59 25.77 7.37 86.65 0.64 26.41 16 6 O -0.58 -25.28 15.57 -4.07 -0.06 -25.35 16 7 N -0.59 -25.51 2.44 -834.46 -2.04 -27.54 16 8 C 0.25 12.24 4.70 85.63 0.40 12.64 16 9 C -0.54 -27.66 7.30 25.60 0.19 -27.47 16 10 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 11 C 0.03 1.62 5.24 84.65 0.44 2.07 16 12 N -0.91 -48.70 13.29 21.45 0.28 -48.42 16 13 Si 0.95 40.78 29.54 68.60 2.03 42.81 16 14 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 15 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 16 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 17 C 0.16 6.06 5.61 85.63 0.48 6.54 16 18 C -0.16 -5.31 5.48 -19.78 -0.11 -5.42 16 19 C -0.06 -1.89 9.86 22.47 0.22 -1.67 16 20 C -0.17 -3.90 10.11 22.36 0.23 -3.67 16 21 C 0.09 2.24 11.18 84.68 0.95 3.19 16 22 N -0.51 -16.70 10.36 -195.84 -2.03 -18.73 16 23 C 0.10 3.49 10.86 84.67 0.92 4.41 16 24 C 0.05 1.72 7.37 25.26 0.19 1.90 16 25 C -0.06 -1.64 9.84 71.24 0.70 -0.94 16 26 O -0.18 -6.20 10.52 4.41 0.05 -6.15 16 27 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.16 7.94 4.98 -2.91 -0.01 7.92 16 31 H 0.01 0.69 8.11 -2.39 -0.02 0.67 16 32 H 0.04 1.92 5.03 -2.39 -0.01 1.90 16 33 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 34 H 0.09 3.32 8.02 -2.39 -0.02 3.30 16 35 H 0.09 3.18 7.32 -2.38 -0.02 3.17 16 36 H 0.14 4.00 7.90 -2.91 -0.02 3.98 16 37 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 38 H 0.19 3.19 8.06 -2.91 -0.02 3.17 16 39 H 0.15 5.21 8.06 -2.91 -0.02 5.19 16 40 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.08 2.31 7.56 -2.38 -0.02 2.29 16 Total: -1.00 -64.29 359.60 5.53 -58.76 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 1.04 Total: 27.59 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: 6.26 Total: -2.97 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -3.78 Total: -94.69 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -0.02 Total: -31.50 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -64.29 5.53 -58.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072621366.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.394 kcal (2) G-P(sol) polarization free energy of solvation -64.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds