Wall clock time and date at job start Tue Mar 31 2020 11:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33319 * 126.17626 * 2 1 4 4 C 1.31626 * 108.95743 * 180.02562 * 3 2 1 5 5 C 1.47704 * 125.54383 * 180.02562 * 4 3 2 6 6 C 1.39639 * 120.15391 * 179.74688 * 5 4 3 7 7 C 1.37944 * 119.84800 * 179.71828 * 6 5 4 8 8 C 1.38369 * 120.14799 * 0.53698 * 7 6 5 9 9 C 1.38375 * 120.30575 * 359.76168 * 8 7 6 10 10 C 1.37937 * 120.15403 * 359.95437 * 9 8 7 11 11 O 1.34207 * 108.91738 * 359.75362 * 4 3 2 12 12 C 1.35406 * 107.59621 * 0.39651 * 11 4 3 13 13 C 1.46577 * 126.56330 * 179.87540 * 12 11 4 14 14 O 1.21703 * 120.00224 * 179.68822 * 13 12 11 15 15 N 1.34777 * 119.99582 * 359.68492 * 13 12 11 16 16 C 1.46499 * 119.99665 * 179.72448 * 15 13 12 17 17 C 1.53004 * 109.47198 * 180.27868 * 16 15 13 18 18 C 1.52997 * 109.47000 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.46940 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00043 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00213 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00116 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00201 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47136 * 90.00100 * 23 21 19 25 25 H 1.48499 * 109.47548 * 209.99879 * 23 21 19 26 26 H 1.48499 * 109.47078 * 330.00388 * 23 21 19 27 27 H 1.08999 * 109.46627 * 269.97532 * 1 2 3 28 28 H 1.09003 * 109.46891 * 29.96802 * 1 2 3 29 29 H 1.08999 * 109.47435 * 149.97121 * 1 2 3 30 30 H 1.08005 * 120.07501 * 359.97427 * 6 5 4 31 31 H 1.07994 * 119.92779 * 180.25429 * 7 6 5 32 32 H 1.08001 * 119.84685 * 179.74208 * 8 7 6 33 33 H 1.08005 * 119.92311 * 179.97438 * 9 8 7 34 34 H 1.07991 * 120.08095 * 180.02562 * 10 9 8 35 35 H 0.97001 * 120.00485 * 0.02562 * 15 13 12 36 36 H 1.09009 * 109.47454 * 300.27637 * 16 15 13 37 37 H 1.08998 * 109.47492 * 60.27932 * 16 15 13 38 38 H 1.08995 * 109.46638 * 300.00121 * 17 16 15 39 39 H 1.09006 * 109.47139 * 60.00254 * 17 16 15 40 40 H 1.08995 * 109.47672 * 299.99669 * 18 17 16 41 41 H 1.09007 * 109.47288 * 60.00489 * 18 17 16 42 42 H 0.97000 * 120.00572 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2940 1.0762 0.0000 4 6 3.5513 0.6865 -0.0006 5 6 4.7272 1.5803 -0.0002 6 6 6.0163 1.0435 0.0045 7 6 7.1100 1.8840 -0.0011 8 6 6.9320 3.2562 -0.0001 9 6 5.6574 3.7949 0.0015 10 6 4.5548 2.9661 0.0012 11 8 3.5910 -0.6550 0.0045 12 6 2.3131 -1.1024 -0.0006 13 6 1.8780 -2.5021 -0.0004 14 8 0.6909 -2.7704 0.0004 15 7 2.7926 -3.4920 -0.0010 16 6 2.3578 -4.8910 0.0053 17 6 3.5839 -5.8062 0.0101 18 6 3.1298 -7.2672 0.0174 19 6 4.3375 -8.1686 0.0214 20 1 5.3297 -7.7421 0.0195 21 6 4.1758 -9.5378 0.0276 22 7 2.9676 -10.0573 0.0295 23 14 5.6728 -10.6551 0.0334 24 1 6.0688 -10.9448 1.4350 25 1 5.3446 -11.9261 -0.6609 26 1 6.7950 -9.9827 -0.6691 27 1 -0.3632 -0.0004 1.0277 28 1 -0.3633 0.8903 -0.5134 29 1 -0.3634 -0.8897 -0.5143 30 1 6.1566 -0.0274 0.0082 31 1 8.1075 1.4702 -0.0017 32 1 7.7918 3.9098 -0.0003 33 1 5.5255 4.8669 0.0027 34 1 3.5606 3.3878 0.0021 35 1 3.7388 -3.2783 -0.0013 36 1 1.7589 -5.0814 0.8960 37 1 1.7597 -5.0896 -0.8840 38 1 4.1828 -5.6158 -0.8805 39 1 4.1821 -5.6076 0.8995 40 1 2.5312 -7.4572 0.9082 41 1 2.5314 -7.4661 -0.8718 42 1 2.8538 -11.0206 0.0335 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081349389.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:34 Heat of formation + Delta-G solvation = -7.351106 kcal Electronic energy + Delta-G solvation = -24157.309481 eV Core-core repulsion = 20489.268039 eV Total energy + Delta-G solvation = -3668.041442 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.62683 -39.62157 -39.31622 -35.93744 -35.29010 -33.39346 -33.09030 -31.48028 -31.34670 -30.51656 -28.24495 -26.58375 -24.79895 -23.34299 -23.11177 -21.68570 -21.48256 -20.85978 -20.24217 -18.28708 -17.62081 -17.21088 -16.51165 -16.29294 -15.78220 -15.43232 -15.30635 -14.96548 -14.48915 -14.24362 -13.96354 -13.92723 -13.90092 -13.44472 -13.31991 -13.21299 -12.43606 -12.32538 -11.93530 -11.89890 -11.83089 -11.62066 -11.39468 -11.08773 -10.93546 -10.80165 -10.64222 -10.24046 -9.99051 -9.92865 -9.48472 -9.46707 -9.16499 -9.03692 -8.53516 -8.40117 -6.04683 -4.07932 0.03359 0.90260 1.07368 2.05631 2.26867 3.01993 3.12921 3.28979 3.35359 3.35523 3.38233 3.50066 4.35938 4.41781 4.43950 4.49618 4.59124 4.64912 4.90420 4.98268 5.07942 5.28448 5.31181 5.36382 5.50097 5.53277 5.60696 5.63055 5.66100 5.68391 5.91438 5.94045 5.99063 6.06986 6.11908 6.29318 6.38592 6.51806 6.71411 6.92625 7.22184 7.50410 7.59480 7.71354 7.93414 8.04883 8.34522 8.98462 9.56421 11.06554 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.014645 B = 0.002402 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.451967 B =11654.320344 C =13534.705277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.082 3.918 3 N -0.476 5.476 4 C 0.258 3.742 5 C -0.026 4.026 6 C -0.084 4.084 7 C -0.121 4.121 8 C -0.097 4.097 9 C -0.124 4.124 10 C -0.066 4.066 11 O -0.181 6.181 12 C -0.108 4.108 13 C 0.602 3.398 14 O -0.515 6.515 15 N -0.711 5.711 16 C 0.115 3.885 17 C -0.122 4.122 18 C 0.024 3.976 19 C -0.523 4.523 20 H 0.055 0.945 21 C 0.057 3.943 22 N -0.893 5.893 23 Si 0.893 3.107 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.140 0.860 35 H 0.403 0.597 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.665 28.943 -0.097 29.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.044 4.044 3 N -0.205 5.205 4 C 0.056 3.944 5 C -0.027 4.027 6 C -0.103 4.103 7 C -0.139 4.139 8 C -0.116 4.116 9 C -0.142 4.142 10 C -0.086 4.086 11 O -0.068 6.068 12 C -0.163 4.163 13 C 0.387 3.613 14 O -0.393 6.393 15 N -0.360 5.360 16 C -0.007 4.007 17 C -0.160 4.160 18 C -0.014 4.014 19 C -0.561 4.561 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.532 5.532 23 Si 0.721 3.279 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.199 1.199 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.116 0.884 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.157 0.843 35 H 0.237 0.763 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.568 29.100 -0.100 29.318 hybrid contribution 1.573 -1.347 0.039 2.071 sum 5.141 27.754 -0.061 28.226 Atomic orbital electron populations 1.20416 0.84944 1.04509 1.03879 1.22054 0.98450 0.86175 0.97682 1.70485 0.99680 1.30899 1.19461 1.23929 0.93297 0.78695 0.98442 1.17333 0.87736 0.90997 1.06655 1.21350 0.90965 1.00924 0.97093 1.21129 0.98904 0.93445 1.00437 1.21438 0.97559 0.95364 0.97228 1.21142 0.92046 1.00207 1.00774 1.21231 1.00333 0.90925 0.96072 1.84524 1.29801 1.22976 1.69507 1.23186 0.80777 0.96701 1.15669 1.16299 0.86056 0.81144 0.77812 1.90868 1.15522 1.81809 1.51086 1.46159 1.09630 1.07225 1.73013 1.21799 0.99108 0.77258 1.02529 1.21913 0.95118 0.97860 1.01076 1.19032 0.96954 0.87620 0.97748 1.21187 0.92778 0.91115 1.51054 0.92643 1.25029 0.95841 0.98359 0.95241 1.69959 1.20950 1.11841 1.50466 0.86574 0.83010 0.80173 0.78116 1.20642 1.21180 1.19899 0.89871 0.90452 0.88369 0.84782 0.84928 0.85315 0.84944 0.84259 0.76261 0.91148 0.91138 0.92579 0.92594 0.96180 0.96168 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 9.87 36.01 0.36 -0.55 16 2 C 0.08 1.11 7.15 -82.55 -0.59 0.52 16 3 N -0.48 -6.27 10.86 -7.69 -0.08 -6.35 16 4 C 0.26 3.19 7.88 -13.77 -0.11 3.08 16 5 C -0.03 -0.26 5.87 -104.98 -0.62 -0.87 16 6 C -0.08 -0.69 9.72 -39.17 -0.38 -1.07 16 7 C -0.12 -0.77 10.03 -39.64 -0.40 -1.17 16 8 C -0.10 -0.54 10.04 -39.48 -0.40 -0.94 16 9 C -0.12 -0.75 10.03 -39.64 -0.40 -1.15 16 10 C -0.07 -0.54 9.69 -39.17 -0.38 -0.92 16 11 O -0.18 -2.37 10.30 2.82 0.03 -2.34 16 12 C -0.11 -1.54 7.18 -36.83 -0.26 -1.80 16 13 C 0.60 9.41 7.78 -12.90 -0.10 9.31 16 14 O -0.51 -9.14 14.77 5.19 0.08 -9.06 16 15 N -0.71 -10.58 5.55 -61.65 -0.34 -10.92 16 16 C 0.12 1.97 5.67 -4.04 -0.02 1.95 16 17 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 18 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 19 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 20 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 23 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.10 1.20 6.45 -51.93 -0.34 0.86 16 30 H 0.13 1.02 7.89 -52.48 -0.41 0.61 16 31 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 32 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 33 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16 34 H 0.14 1.09 7.82 -52.49 -0.41 0.68 16 35 H 0.40 5.18 8.26 -40.82 -0.34 4.84 16 36 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 367.13 15.07 5.53 5.53 Total: -1.00 -32.28 367.13 -8.75 -41.03 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.69 Total: 0.52 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -3.99 Total: -8.91 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.31 Total: -43.12 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.11 Total: -11.40 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.28 -8.75 -41.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081349389.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.683 kcal (2) G-P(sol) polarization free energy of solvation -32.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds