Wall clock time and date at job start Tue Mar 31 2020 11:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33319 * 126.17626 * 2 1 4 4 C 1.31626 * 108.95743 * 180.02562 * 3 2 1 5 5 C 1.47704 * 125.54383 * 180.02562 * 4 3 2 6 6 C 1.39639 * 120.15391 * 179.74688 * 5 4 3 7 7 C 1.37944 * 119.84800 * 179.71828 * 6 5 4 8 8 C 1.38369 * 120.14799 * 0.53698 * 7 6 5 9 9 C 1.38375 * 120.30575 * 359.76168 * 8 7 6 10 10 C 1.37937 * 120.15403 * 359.95437 * 9 8 7 11 11 O 1.34207 * 108.91738 * 359.75362 * 4 3 2 12 12 C 1.35406 * 107.59621 * 0.39651 * 11 4 3 13 13 C 1.46577 * 126.56330 * 179.87540 * 12 11 4 14 14 O 1.21703 * 120.00224 * 179.68822 * 13 12 11 15 15 N 1.34777 * 119.99582 * 359.68492 * 13 12 11 16 16 C 1.46499 * 119.99665 * 179.72448 * 15 13 12 17 17 C 1.53004 * 109.47198 * 180.27868 * 16 15 13 18 18 C 1.52997 * 109.47000 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.46940 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00043 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00213 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00116 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00201 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47136 * 90.00100 * 23 21 19 25 25 H 1.48499 * 109.47548 * 209.99879 * 23 21 19 26 26 H 1.48499 * 109.47078 * 330.00388 * 23 21 19 27 27 H 1.08999 * 109.46627 * 269.97532 * 1 2 3 28 28 H 1.09003 * 109.46891 * 29.96802 * 1 2 3 29 29 H 1.08999 * 109.47435 * 149.97121 * 1 2 3 30 30 H 1.08005 * 120.07501 * 359.97427 * 6 5 4 31 31 H 1.07994 * 119.92779 * 180.25429 * 7 6 5 32 32 H 1.08001 * 119.84685 * 179.74208 * 8 7 6 33 33 H 1.08005 * 119.92311 * 179.97438 * 9 8 7 34 34 H 1.07991 * 120.08095 * 180.02562 * 10 9 8 35 35 H 0.97001 * 120.00485 * 0.02562 * 15 13 12 36 36 H 1.09009 * 109.47454 * 300.27637 * 16 15 13 37 37 H 1.08998 * 109.47492 * 60.27932 * 16 15 13 38 38 H 1.08995 * 109.46638 * 300.00121 * 17 16 15 39 39 H 1.09006 * 109.47139 * 60.00254 * 17 16 15 40 40 H 1.08995 * 109.47672 * 299.99669 * 18 17 16 41 41 H 1.09007 * 109.47288 * 60.00489 * 18 17 16 42 42 H 0.97000 * 120.00572 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2940 1.0762 0.0000 4 6 3.5513 0.6865 -0.0006 5 6 4.7272 1.5803 -0.0002 6 6 6.0163 1.0435 0.0045 7 6 7.1100 1.8840 -0.0011 8 6 6.9320 3.2562 -0.0001 9 6 5.6574 3.7949 0.0015 10 6 4.5548 2.9661 0.0012 11 8 3.5910 -0.6550 0.0045 12 6 2.3131 -1.1024 -0.0006 13 6 1.8780 -2.5021 -0.0004 14 8 0.6909 -2.7704 0.0004 15 7 2.7926 -3.4920 -0.0010 16 6 2.3578 -4.8910 0.0053 17 6 3.5839 -5.8062 0.0101 18 6 3.1298 -7.2672 0.0174 19 6 4.3375 -8.1686 0.0214 20 1 5.3297 -7.7421 0.0195 21 6 4.1758 -9.5378 0.0276 22 7 2.9676 -10.0573 0.0295 23 14 5.6728 -10.6551 0.0334 24 1 6.0688 -10.9448 1.4350 25 1 5.3446 -11.9261 -0.6609 26 1 6.7950 -9.9827 -0.6691 27 1 -0.3632 -0.0004 1.0277 28 1 -0.3633 0.8903 -0.5134 29 1 -0.3634 -0.8897 -0.5143 30 1 6.1566 -0.0274 0.0082 31 1 8.1075 1.4702 -0.0017 32 1 7.7918 3.9098 -0.0003 33 1 5.5255 4.8669 0.0027 34 1 3.5606 3.3878 0.0021 35 1 3.7388 -3.2783 -0.0013 36 1 1.7589 -5.0814 0.8960 37 1 1.7597 -5.0896 -0.8840 38 1 4.1828 -5.6158 -0.8805 39 1 4.1821 -5.6076 0.8995 40 1 2.5312 -7.4572 0.9082 41 1 2.5314 -7.4661 -0.8718 42 1 2.8538 -11.0206 0.0335 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081349389.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:31 Heat of formation + Delta-G solvation = -28.450514 kcal Electronic energy + Delta-G solvation = -24158.224420 eV Core-core repulsion = 20489.268039 eV Total energy + Delta-G solvation = -3668.956381 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.61385 -40.77607 -39.97893 -37.24896 -36.50493 -35.23484 -33.92031 -33.08690 -32.00618 -31.33224 -29.52922 -28.11990 -25.83031 -24.82404 -23.83700 -22.62734 -22.46912 -22.31248 -21.49571 -19.38595 -18.55070 -18.36942 -18.22983 -17.15263 -16.89417 -16.69764 -16.48371 -16.25785 -15.69602 -15.39353 -15.21196 -14.86278 -14.43683 -14.36611 -14.30355 -14.15027 -13.94233 -13.78365 -13.56370 -13.32349 -12.77000 -12.58999 -12.44408 -12.41211 -12.32840 -12.27147 -11.97403 -11.72028 -11.68950 -11.32443 -11.14376 -10.79488 -10.55950 -10.30918 -9.99143 -9.39924 -8.20245 -6.31497 -0.81771 0.23112 0.38611 1.06467 1.37133 1.41311 1.42414 1.53357 1.83671 1.95898 2.41515 2.58405 2.79036 3.13587 3.47709 3.49329 3.91708 3.97029 4.02346 4.13289 4.16629 4.21377 4.29009 4.43334 4.50320 4.51612 4.63871 4.65583 4.76365 4.84965 4.88891 4.89975 5.05835 5.13071 5.15712 5.26412 5.35603 5.43697 5.49989 5.50089 5.68987 5.83048 5.90032 6.13681 6.22009 6.38388 6.83917 6.85501 7.37921 8.91700 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.014645 B = 0.002402 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.451967 B =11654.320344 C =13534.705277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.084 3.916 3 N -0.493 5.493 4 C 0.270 3.730 5 C -0.058 4.058 6 C -0.092 4.092 7 C -0.124 4.124 8 C -0.087 4.087 9 C -0.123 4.123 10 C -0.073 4.073 11 O -0.184 6.184 12 C -0.135 4.135 13 C 0.606 3.394 14 O -0.542 6.542 15 N -0.703 5.703 16 C 0.129 3.871 17 C -0.103 4.103 18 C 0.024 3.976 19 C -0.541 4.541 20 H 0.065 0.935 21 C -0.003 4.003 22 N -0.933 5.933 23 Si 0.966 3.034 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.261 1.261 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.134 0.866 31 H 0.156 0.844 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.136 0.864 35 H 0.414 0.586 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.067 0.933 40 H -0.005 1.005 41 H -0.005 1.005 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.467 31.127 -0.066 32.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.041 4.041 3 N -0.222 5.222 4 C 0.069 3.931 5 C -0.059 4.059 6 C -0.112 4.112 7 C -0.141 4.141 8 C -0.105 4.105 9 C -0.140 4.140 10 C -0.092 4.092 11 O -0.071 6.071 12 C -0.190 4.190 13 C 0.392 3.608 14 O -0.422 6.422 15 N -0.353 5.353 16 C 0.006 3.994 17 C -0.141 4.141 18 C -0.014 4.014 19 C -0.579 4.579 20 H 0.083 0.917 21 C -0.201 4.201 22 N -0.574 5.574 23 Si 0.791 3.209 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.185 1.185 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.105 0.895 30 H 0.152 0.848 31 H 0.173 0.827 32 H 0.178 0.822 33 H 0.177 0.823 34 H 0.154 0.846 35 H 0.251 0.749 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.014 0.986 41 H 0.014 0.986 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.393 31.311 -0.069 31.957 hybrid contribution 0.790 -1.848 0.030 2.010 sum 7.183 29.463 -0.039 30.326 Atomic orbital electron populations 1.20462 0.83699 1.04799 1.04554 1.22457 0.99422 0.86118 0.96147 1.70534 1.00058 1.30681 1.20971 1.24632 0.94010 0.78578 0.95905 1.17552 0.87423 0.91371 1.09600 1.21496 0.91004 1.01417 0.97265 1.21461 0.99283 0.93827 0.99569 1.21878 0.98409 0.95454 0.94759 1.21490 0.91575 1.01364 0.99595 1.21361 1.01175 0.90485 0.96213 1.84503 1.29219 1.23446 1.69957 1.22809 0.81488 0.96035 1.18639 1.16372 0.85653 0.81707 0.77052 1.90848 1.16551 1.82445 1.52335 1.45918 1.10266 1.06107 1.73026 1.21429 0.97904 0.78253 1.01804 1.21619 0.95882 0.94503 1.02128 1.18938 0.95823 0.91226 0.95365 1.21663 0.93832 0.91911 1.50538 0.91695 1.26007 0.99003 1.00263 0.94806 1.70100 1.23395 1.12268 1.51600 0.85426 0.79227 0.77809 0.78453 1.19832 1.21000 1.18528 0.88899 0.88611 0.89509 0.84825 0.82666 0.82153 0.82272 0.84565 0.74923 0.91993 0.91974 0.91455 0.91454 0.98631 0.98620 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.75 9.87 71.24 0.70 -1.05 16 2 C 0.08 2.30 7.15 41.94 0.30 2.60 16 3 N -0.49 -12.97 10.86 -292.24 -3.17 -16.14 16 4 C 0.27 6.65 7.88 87.23 0.69 7.34 16 5 C -0.06 -1.10 5.87 -20.10 -0.12 -1.22 16 6 C -0.09 -1.40 9.72 22.54 0.22 -1.19 16 7 C -0.12 -1.23 10.03 22.23 0.22 -1.00 16 8 C -0.09 -0.65 10.04 22.33 0.22 -0.42 16 9 C -0.12 -1.12 10.03 22.23 0.22 -0.90 16 10 C -0.07 -1.09 9.69 22.54 0.22 -0.88 16 11 O -0.18 -4.82 10.30 -12.82 -0.13 -4.96 16 12 C -0.13 -3.90 7.18 24.06 0.17 -3.72 16 13 C 0.61 19.30 7.78 86.42 0.67 19.97 16 14 O -0.54 -19.78 14.77 -4.36 -0.06 -19.85 16 15 N -0.70 -20.98 5.55 -467.16 -2.59 -23.57 16 16 C 0.13 4.50 5.67 86.38 0.49 4.99 16 17 C -0.10 -3.97 5.27 30.59 0.16 -3.81 16 18 C 0.02 1.24 4.97 29.85 0.15 1.39 16 19 C -0.54 -30.08 9.11 25.60 0.23 -29.84 16 20 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 21 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 22 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16 23 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 26 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 27 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.09 2.17 6.45 -2.39 -0.02 2.15 16 30 H 0.13 1.94 7.89 -2.91 -0.02 1.91 16 31 H 0.16 0.80 8.06 -2.91 -0.02 0.77 16 32 H 0.16 0.21 8.06 -2.91 -0.02 0.19 16 33 H 0.16 0.58 8.06 -2.91 -0.02 0.55 16 34 H 0.14 2.04 7.82 -2.92 -0.02 2.02 16 35 H 0.41 10.43 8.26 -92.71 -0.77 9.66 16 36 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 40 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 41 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 42 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -70.66 367.13 1.64 -69.02 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.27 Total: 13.64 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: 5.02 Total: -7.45 kcal Atomic # 7 Polarization: -90.62 SS G_CDS: -5.48 Total: -96.11 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.20 Total: -24.80 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -70.66 1.64 -69.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081349389.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.571 kcal (2) G-P(sol) polarization free energy of solvation -70.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds