Wall clock time and date at job start Tue Mar 31 2020 10:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38322 * 119.87778 * 2 1 4 4 C 1.38022 * 120.11904 * 180.02562 * 3 2 1 5 5 C 1.39317 * 119.87829 * 359.97438 * 4 3 2 6 6 C 1.48453 * 120.11947 * 179.97438 * 5 4 3 7 7 C 1.42189 * 126.84077 * 179.97438 * 6 5 4 8 8 C 1.36620 * 103.78843 * 179.97438 * 7 6 5 9 9 C 1.47531 * 126.82813 * 180.02562 * 8 7 6 10 10 O 1.21577 * 120.00273 * 4.65724 * 9 8 7 11 11 N 1.34782 * 119.99695 * 184.65502 * 9 8 7 12 12 C 1.46491 * 120.00198 * 4.12514 * 11 9 8 13 13 C 1.46500 * 119.99727 * 184.11569 * 11 9 8 14 14 H 1.09001 * 109.47234 * 0.02562 * 13 11 9 15 15 C 1.53002 * 109.47044 * 120.00098 * 13 11 9 16 16 C 1.50694 * 109.47512 * 240.00495 * 13 11 9 17 17 H 1.08002 * 119.99830 * 359.97438 * 16 13 11 18 18 C 1.37875 * 120.00503 * 180.02562 * 16 13 11 19 19 N 1.31520 * 119.99805 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 120.00490 * 179.97438 * 18 16 13 21 21 H 1.48505 * 109.47144 * 89.99663 * 20 18 16 22 22 H 1.48502 * 109.47566 * 209.99758 * 20 18 16 23 23 H 1.48496 * 109.47196 * 329.99817 * 20 18 16 24 24 O 1.34641 * 106.34257 * 0.26136 * 8 7 6 25 25 N 1.20877 * 111.74447 * 359.52720 * 24 8 7 26 26 C 1.39319 * 119.76415 * 0.25262 * 5 4 3 27 27 C 1.38022 * 119.87917 * 359.47212 * 26 5 4 28 28 H 1.09001 * 109.47235 * 90.00003 * 1 2 3 29 29 H 1.09003 * 109.47261 * 209.99751 * 1 2 3 30 30 H 1.08994 * 109.47205 * 329.99854 * 1 2 3 31 31 H 1.08000 * 119.93968 * 359.97438 * 3 2 1 32 32 H 1.08001 * 120.06148 * 180.02562 * 4 3 2 33 33 H 1.07996 * 128.10932 * 0.02562 * 7 6 5 34 34 H 1.08997 * 109.47594 * 84.22555 * 12 11 9 35 35 H 1.09006 * 109.46845 * 324.22366 * 12 11 9 36 36 H 1.09003 * 109.46994 * 204.22771 * 12 11 9 37 37 H 1.09001 * 109.46458 * 60.00317 * 15 13 11 38 38 H 1.08998 * 109.47350 * 179.97438 * 15 13 11 39 39 H 1.08996 * 109.47087 * 300.00350 * 15 13 11 40 40 H 0.96994 * 120.00520 * 180.02562 * 19 18 16 41 41 H 1.08004 * 120.06175 * 179.74337 * 26 5 4 42 42 H 1.08003 * 119.94211 * 180.24872 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1994 0.0000 4 6 3.5763 1.2052 -0.0005 5 6 4.2754 0.0001 -0.0005 6 6 5.7599 0.0001 -0.0017 7 6 6.6125 -1.1378 -0.0013 8 6 7.8696 -0.6029 -0.0034 9 6 9.1457 -1.3432 -0.0045 10 8 9.1449 -2.5560 -0.0890 11 7 10.3125 -0.6749 0.0882 12 6 10.3116 0.7773 0.2809 13 6 11.5817 -1.4009 -0.0035 14 1 11.3831 -2.4632 -0.1455 15 6 12.3881 -0.8702 -1.1905 16 6 12.3673 -1.2017 1.2669 17 1 11.9620 -0.5947 2.0629 18 6 13.6041 -1.7935 1.4127 19 7 14.0979 -2.5324 0.4431 20 14 14.5783 -1.5461 2.9871 21 1 14.2288 -2.6136 3.9585 22 1 16.0310 -1.6077 2.6853 23 1 14.2496 -0.2202 3.5694 24 8 7.7123 0.7343 0.0012 25 7 6.5449 1.0479 -0.0038 26 6 3.5764 -1.2050 -0.0053 27 6 2.1962 -1.1993 0.0010 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.6531 2.1330 -0.0004 32 1 4.1134 2.1422 -0.0001 33 1 6.3321 -2.1807 -0.0005 34 1 10.2045 1.0030 1.3419 35 1 9.4796 1.2163 -0.2698 36 1 11.2500 1.1931 -0.0861 37 1 12.5866 0.1922 -1.0488 38 1 13.3326 -1.4100 -1.2585 39 1 11.8198 -1.0143 -2.1093 40 1 14.9677 -2.9491 0.5457 41 1 4.1135 -2.1420 -0.0095 42 1 1.6532 -2.1330 0.0013 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103442144.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:52 Heat of formation + Delta-G solvation = 54.414018 kcal Electronic energy + Delta-G solvation = -25000.851547 eV Core-core repulsion = 21335.488442 eV Total energy + Delta-G solvation = -3665.363105 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.87122 -39.57510 -39.11713 -35.70196 -34.86120 -33.05400 -32.34126 -31.73283 -31.17110 -29.34261 -27.44605 -26.33565 -25.28915 -24.21958 -23.42865 -22.64954 -21.72294 -20.54732 -19.35492 -17.67190 -17.41050 -16.58802 -16.37013 -15.87595 -15.67665 -15.44315 -14.96744 -14.50448 -14.38665 -14.12889 -13.88217 -13.56833 -13.48085 -13.06273 -12.69533 -12.66670 -12.59917 -12.53011 -11.74089 -11.65096 -11.61158 -11.36593 -11.15200 -11.09337 -10.89075 -10.79452 -10.74025 -10.31936 -10.22741 -9.61729 -9.55740 -9.24738 -9.23384 -8.57442 -8.48897 -7.78738 -6.12702 -4.20970 0.60232 1.09580 1.12998 2.30399 2.86322 3.25650 3.32187 3.33879 3.48544 3.59375 3.70109 3.85594 4.33457 4.39855 4.54921 4.63730 4.73043 4.99137 5.02568 5.11003 5.17485 5.20623 5.23492 5.26354 5.43537 5.46449 5.72065 5.77202 5.82688 5.85899 6.05750 6.14356 6.25297 6.28170 6.33964 6.65906 6.69277 6.73708 6.94641 7.23536 7.35352 7.63782 7.90411 8.05594 8.10526 8.32177 8.60362 8.84498 9.45434 10.92788 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.032382 B = 0.002479 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.464357 B =11291.614416 C =11392.978933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.080 4.080 3 C -0.122 4.122 4 C -0.088 4.088 5 C -0.022 4.022 6 C 0.050 3.950 7 C -0.160 4.160 8 C -0.054 4.054 9 C 0.584 3.416 10 O -0.522 6.522 11 N -0.572 5.572 12 C 0.076 3.924 13 C 0.257 3.743 14 H 0.067 0.933 15 C -0.149 4.149 16 C -0.527 4.527 17 H 0.061 0.939 18 C 0.065 3.935 19 N -0.887 5.887 20 Si 0.901 3.099 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 O 0.122 5.878 25 N -0.351 5.351 26 C -0.089 4.089 27 C -0.120 4.120 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.182 0.818 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.033 0.967 38 H 0.097 0.903 39 H 0.014 0.986 40 H 0.264 0.736 41 H 0.130 0.870 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.184 6.603 -2.091 23.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.080 4.080 3 C -0.140 4.140 4 C -0.107 4.107 5 C -0.023 4.023 6 C -0.106 4.106 7 C -0.183 4.183 8 C -0.120 4.120 9 C 0.367 3.633 10 O -0.400 6.400 11 N -0.302 5.302 12 C -0.067 4.067 13 C 0.158 3.842 14 H 0.085 0.915 15 C -0.207 4.207 16 C -0.566 4.566 17 H 0.080 0.920 18 C -0.137 4.137 19 N -0.525 5.525 20 Si 0.728 3.272 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 O 0.050 5.950 25 N -0.053 5.053 26 C -0.109 4.109 27 C -0.138 4.138 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.199 0.801 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.052 0.948 38 H 0.116 0.884 39 H 0.033 0.967 40 H 0.074 0.926 41 H 0.148 0.852 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -22.140 7.180 -2.188 23.378 hybrid contribution 0.593 -0.569 0.898 1.218 sum -21.547 6.611 -1.289 22.575 Atomic orbital electron populations 1.20823 0.91002 1.02939 1.02476 1.20060 0.96274 0.93178 0.98521 1.20972 0.93696 0.97782 1.01508 1.21214 0.94140 0.97500 0.97852 1.17677 0.87149 0.94231 1.03231 1.21888 0.94937 0.89006 1.04731 1.22800 0.89845 1.01221 1.04388 1.24738 0.98087 0.83172 1.05989 1.16722 0.80979 0.86241 0.79369 1.90825 1.85364 1.11877 1.51963 1.48295 1.06870 1.08341 1.66655 1.21891 1.02900 0.80641 1.01307 1.19128 0.76838 0.93297 0.94966 0.91528 1.22127 1.02857 1.00158 0.95578 1.21275 1.02373 1.32113 1.00827 0.92044 1.24889 0.97294 0.94719 0.96824 1.69868 1.18687 1.32083 1.31862 0.86453 0.78976 0.78635 0.83095 1.20562 1.21084 1.19855 1.85159 1.20397 1.22726 1.66677 1.73925 0.89929 1.23951 1.17472 1.21170 0.94228 0.97181 0.98309 1.20960 0.93635 0.97814 1.01382 0.90978 0.91365 0.91433 0.85613 0.85277 0.80081 0.92707 0.91575 0.89724 0.94766 0.88443 0.96709 0.92565 0.85166 0.85423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 10.01 36.01 0.36 -0.28 16 2 C -0.08 -0.67 5.88 -104.56 -0.62 -1.28 16 3 C -0.12 -1.10 9.68 -39.63 -0.38 -1.48 16 4 C -0.09 -0.97 9.70 -39.26 -0.38 -1.35 16 5 C -0.02 -0.27 5.88 -104.88 -0.62 -0.89 16 6 C 0.05 0.72 7.05 -82.53 -0.58 0.14 16 7 C -0.16 -2.41 10.30 -38.65 -0.40 -2.81 16 8 C -0.05 -0.93 6.93 -36.38 -0.25 -1.19 16 9 C 0.58 12.17 7.67 -12.47 -0.10 12.08 16 10 O -0.52 -12.46 16.25 5.30 0.09 -12.37 16 11 N -0.57 -12.16 2.75 -176.50 -0.49 -12.64 16 12 C 0.08 1.32 9.07 59.84 0.54 1.86 16 13 C 0.26 6.39 2.62 -69.08 -0.18 6.20 16 14 H 0.07 1.89 6.91 -51.93 -0.36 1.53 16 15 C -0.15 -3.44 8.96 37.16 0.33 -3.10 16 16 C -0.53 -13.94 8.37 -34.44 -0.29 -14.23 16 17 H 0.06 1.61 7.65 -52.49 -0.40 1.21 16 18 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 19 N -0.89 -24.49 11.32 55.43 0.63 -23.86 16 20 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 O 0.12 1.96 7.85 15.56 0.12 2.09 16 25 N -0.35 -5.46 11.78 33.39 0.39 -5.06 16 26 C -0.09 -0.92 9.60 -39.26 -0.38 -1.30 16 27 C -0.12 -1.04 9.68 -39.63 -0.38 -1.43 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 30 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 31 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.13 1.40 7.89 -52.49 -0.41 0.99 16 33 H 0.18 2.36 7.57 -52.49 -0.40 1.96 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 1.01 5.10 -51.93 -0.26 0.74 16 36 H 0.08 1.44 6.44 -51.93 -0.33 1.10 16 37 H 0.03 0.72 6.67 -51.93 -0.35 0.38 16 38 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 39 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.13 1.17 7.22 -52.48 -0.38 0.79 16 42 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 LS Contribution 354.05 15.07 5.34 5.34 Total: -1.00 -30.12 354.05 -7.65 -37.77 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -5.30 Total: 0.43 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -3.41 Total: -7.40 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.53 Total: -41.57 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.21 Total: -10.29 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.12 -7.65 -37.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442144.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.183 kcal (2) G-P(sol) polarization free energy of solvation -30.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds