Wall clock time and date at job start Tue Mar 31 2020 10:51:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.38322 * 119.87778 * 2 1
4 4 C 1.38022 * 120.11904 * 180.02562 * 3 2 1
5 5 C 1.39317 * 119.87829 * 359.97438 * 4 3 2
6 6 C 1.48453 * 120.11947 * 179.97438 * 5 4 3
7 7 C 1.42189 * 126.84077 * 179.97438 * 6 5 4
8 8 C 1.36620 * 103.78843 * 179.97438 * 7 6 5
9 9 C 1.47531 * 126.82813 * 180.02562 * 8 7 6
10 10 O 1.21577 * 120.00273 * 4.65724 * 9 8 7
11 11 N 1.34782 * 119.99695 * 184.65502 * 9 8 7
12 12 C 1.46491 * 120.00198 * 4.12514 * 11 9 8
13 13 C 1.46500 * 119.99727 * 184.11569 * 11 9 8
14 14 H 1.09001 * 109.47234 * 0.02562 * 13 11 9
15 15 C 1.53002 * 109.47044 * 120.00098 * 13 11 9
16 16 C 1.50694 * 109.47512 * 240.00495 * 13 11 9
17 17 H 1.08002 * 119.99830 * 359.97438 * 16 13 11
18 18 C 1.37875 * 120.00503 * 180.02562 * 16 13 11
19 19 N 1.31520 * 119.99805 * 359.97438 * 18 16 13
20 20 Si 1.86797 * 120.00490 * 179.97438 * 18 16 13
21 21 H 1.48505 * 109.47144 * 89.99663 * 20 18 16
22 22 H 1.48502 * 109.47566 * 209.99758 * 20 18 16
23 23 H 1.48496 * 109.47196 * 329.99817 * 20 18 16
24 24 O 1.34641 * 106.34257 * 0.26136 * 8 7 6
25 25 N 1.20877 * 111.74447 * 359.52720 * 24 8 7
26 26 C 1.39319 * 119.76415 * 0.25262 * 5 4 3
27 27 C 1.38022 * 119.87917 * 359.47212 * 26 5 4
28 28 H 1.09001 * 109.47235 * 90.00003 * 1 2 3
29 29 H 1.09003 * 109.47261 * 209.99751 * 1 2 3
30 30 H 1.08994 * 109.47205 * 329.99854 * 1 2 3
31 31 H 1.08000 * 119.93968 * 359.97438 * 3 2 1
32 32 H 1.08001 * 120.06148 * 180.02562 * 4 3 2
33 33 H 1.07996 * 128.10932 * 0.02562 * 7 6 5
34 34 H 1.08997 * 109.47594 * 84.22555 * 12 11 9
35 35 H 1.09006 * 109.46845 * 324.22366 * 12 11 9
36 36 H 1.09003 * 109.46994 * 204.22771 * 12 11 9
37 37 H 1.09001 * 109.46458 * 60.00317 * 15 13 11
38 38 H 1.08998 * 109.47350 * 179.97438 * 15 13 11
39 39 H 1.08996 * 109.47087 * 300.00350 * 15 13 11
40 40 H 0.96994 * 120.00520 * 180.02562 * 19 18 16
41 41 H 1.08004 * 120.06175 * 179.74337 * 26 5 4
42 42 H 1.08003 * 119.94211 * 180.24872 * 27 26 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1961 1.1994 0.0000
4 6 3.5763 1.2052 -0.0005
5 6 4.2754 0.0001 -0.0005
6 6 5.7599 0.0001 -0.0017
7 6 6.6125 -1.1378 -0.0013
8 6 7.8696 -0.6029 -0.0034
9 6 9.1457 -1.3432 -0.0045
10 8 9.1449 -2.5560 -0.0890
11 7 10.3125 -0.6749 0.0882
12 6 10.3116 0.7773 0.2809
13 6 11.5817 -1.4009 -0.0035
14 1 11.3831 -2.4632 -0.1455
15 6 12.3881 -0.8702 -1.1905
16 6 12.3673 -1.2017 1.2669
17 1 11.9620 -0.5947 2.0629
18 6 13.6041 -1.7935 1.4127
19 7 14.0979 -2.5324 0.4431
20 14 14.5783 -1.5461 2.9871
21 1 14.2288 -2.6136 3.9585
22 1 16.0310 -1.6077 2.6853
23 1 14.2496 -0.2202 3.5694
24 8 7.7123 0.7343 0.0012
25 7 6.5449 1.0479 -0.0038
26 6 3.5764 -1.2050 -0.0053
27 6 2.1962 -1.1993 0.0010
28 1 -0.3634 0.0000 -1.0277
29 1 -0.3634 -0.8900 0.5138
30 1 -0.3633 0.8899 0.5138
31 1 1.6531 2.1330 -0.0004
32 1 4.1134 2.1422 -0.0001
33 1 6.3321 -2.1807 -0.0005
34 1 10.2045 1.0030 1.3419
35 1 9.4796 1.2163 -0.2698
36 1 11.2500 1.1931 -0.0861
37 1 12.5866 0.1922 -1.0488
38 1 13.3326 -1.4100 -1.2585
39 1 11.8198 -1.0143 -2.1093
40 1 14.9677 -2.9491 0.5457
41 1 4.1135 -2.1420 -0.0095
42 1 1.6532 -2.1330 0.0013
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000103442144.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:51:51
Heat of formation + Delta-G solvation = 38.748650 kcal
Electronic energy + Delta-G solvation = -25001.530848 eV
Core-core repulsion = 21335.488442 eV
Total energy + Delta-G solvation = -3666.042406 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.142 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-46.09258 -40.81618 -40.29886 -37.43121 -35.93475 -34.91100 -33.43840 -32.84847
-31.97565 -31.12545 -28.19137 -27.80092 -27.30577 -25.59967 -24.52553 -23.61478
-22.72739 -21.94552 -20.70650 -18.93649 -18.89146 -18.41940 -17.69244 -17.34582
-16.83052 -16.40388 -16.21620 -16.10963 -15.80771 -15.03332 -14.80609 -14.68196
-14.53735 -14.34635 -14.25441 -14.09952 -13.50084 -13.36862 -13.16426 -13.00642
-12.92975 -12.76899 -12.72804 -12.63702 -12.28511 -12.19305 -12.12573 -11.89592
-11.73037 -11.27941 -11.19749 -10.93782 -10.53715 -9.95865 -9.52780 -9.39039
-8.15834 -6.31848 -0.41695 -0.10721 0.40898 1.27478 1.42982 1.43230
1.47342 1.54646 1.90892 2.21185 2.44133 2.77111 2.81500 3.12801
3.18964 3.68074 3.82929 3.94065 3.97741 4.02820 4.17001 4.38980
4.43922 4.49630 4.65269 4.67279 4.72922 4.81423 4.85793 4.88591
4.88784 5.00655 5.01755 5.10244 5.25975 5.38960 5.39555 5.46952
5.49513 5.62067 5.62774 5.95922 5.97118 6.11016 6.50465 6.70750
6.85577 7.03007 7.38926 8.88857
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.032382 B = 0.002479 C = 0.002457
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 864.464357 B =11291.614416 C =11392.978933
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C -0.074 4.074
3 C -0.125 4.125
4 C -0.098 4.098
5 C -0.054 4.054
6 C 0.061 3.939
7 C -0.146 4.146
8 C -0.072 4.072
9 C 0.583 3.417
10 O -0.563 6.563
11 N -0.580 5.580
12 C 0.077 3.923
13 C 0.261 3.739
14 H 0.021 0.979
15 C -0.136 4.136
16 C -0.540 4.540
17 H 0.061 0.939
18 C 0.018 3.982
19 N -0.914 5.914
20 Si 0.964 3.036
21 H -0.282 1.282
22 H -0.279 1.279
23 H -0.264 1.264
24 O 0.118 5.882
25 N -0.358 5.358
26 C -0.094 4.094
27 C -0.123 4.123
28 H 0.083 0.917
29 H 0.079 0.921
30 H 0.077 0.923
31 H 0.148 0.852
32 H 0.124 0.876
33 H 0.199 0.801
34 H 0.060 0.940
35 H 0.088 0.912
36 H 0.088 0.912
37 H 0.050 0.950
38 H 0.074 0.926
39 H 0.025 0.975
40 H 0.266 0.734
41 H 0.139 0.861
42 H 0.153 0.847
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.682 7.702 -1.512 25.900
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C -0.075 4.075
3 C -0.143 4.143
4 C -0.118 4.118
5 C -0.055 4.055
6 C -0.095 4.095
7 C -0.168 4.168
8 C -0.137 4.137
9 C 0.369 3.631
10 O -0.444 6.444
11 N -0.308 5.308
12 C -0.065 4.065
13 C 0.160 3.840
14 H 0.039 0.961
15 C -0.194 4.194
16 C -0.579 4.579
17 H 0.079 0.921
18 C -0.182 4.182
19 N -0.552 5.552
20 Si 0.789 3.211
21 H -0.208 1.208
22 H -0.205 1.205
23 H -0.188 1.188
24 O 0.048 5.952
25 N -0.061 5.061
26 C -0.114 4.114
27 C -0.141 4.141
28 H 0.101 0.899
29 H 0.098 0.902
30 H 0.096 0.904
31 H 0.166 0.834
32 H 0.142 0.858
33 H 0.216 0.784
34 H 0.079 0.921
35 H 0.106 0.894
36 H 0.107 0.893
37 H 0.069 0.931
38 H 0.092 0.908
39 H 0.044 0.956
40 H 0.075 0.925
41 H 0.157 0.843
42 H 0.171 0.829
Dipole moment (debyes) X Y Z Total
from point charges -24.642 8.319 -1.610 26.058
hybrid contribution 1.149 -0.908 0.696 1.621
sum -23.493 7.411 -0.914 24.651
Atomic orbital electron populations
1.20902 0.88722 1.04097 1.03475 1.20484 0.97961 0.92725 0.96341
1.21258 0.92934 0.99250 1.00869 1.21302 0.95207 0.96930 0.98333
1.17805 0.85895 0.95615 1.06218 1.22227 0.96077 0.88136 1.03041
1.23098 0.89090 1.02304 1.02272 1.24054 0.96923 0.83970 1.08747
1.17000 0.81872 0.85987 0.78284 1.90789 1.86263 1.13682 1.53645
1.48253 1.06021 1.09788 1.66783 1.22056 1.04069 0.78273 1.02148
1.18772 0.78422 0.91509 0.95289 0.96099 1.21928 1.01481 1.00642
0.95383 1.21510 1.02769 1.32172 1.01406 0.92126 1.25685 0.98297
0.94416 0.99782 1.69997 1.19018 1.32697 1.33532 0.85461 0.77654
0.78704 0.79234 1.20803 1.20464 1.18810 1.85122 1.20851 1.21876
1.67357 1.73903 0.89784 1.24271 1.18162 1.21380 0.95174 0.96868
0.97952 1.21306 0.93067 0.99203 1.00485 0.89888 0.90198 0.90399
0.83406 0.85820 0.78378 0.92096 0.89374 0.89321 0.93070 0.90778
0.95622 0.92474 0.84273 0.82910
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.85 10.01 71.24 0.71 -0.14 16
2 C -0.07 -1.02 5.88 -19.82 -0.12 -1.13 16
3 C -0.13 -1.96 9.68 22.24 0.22 -1.75 16
4 C -0.10 -2.06 9.70 22.48 0.22 -1.84 16
5 C -0.05 -1.27 5.88 -20.03 -0.12 -1.39 16
6 C 0.06 1.72 7.05 42.99 0.30 2.02 16
7 C -0.15 -4.32 10.30 22.87 0.24 -4.08 16
8 C -0.07 -2.48 6.93 24.34 0.17 -2.31 16
9 C 0.58 24.99 7.67 86.69 0.67 25.66 16
10 O -0.56 -28.00 16.25 -3.96 -0.06 -28.07 16
11 N -0.58 -25.11 2.75 -830.60 -2.29 -27.40 16
12 C 0.08 2.62 9.07 127.77 1.16 3.78 16
13 C 0.26 13.38 2.62 44.24 0.12 13.49 16
14 H 0.02 1.26 6.91 -2.39 -0.02 1.25 16
15 C -0.14 -6.38 8.96 71.98 0.64 -5.74 16
16 C -0.54 -29.00 8.37 25.60 0.21 -28.79 16
17 H 0.06 3.19 7.65 -2.91 -0.02 3.17 16
18 C 0.02 0.99 5.30 84.65 0.45 1.44 16
19 N -0.91 -51.51 11.32 21.45 0.24 -51.27 16
20 Si 0.96 42.64 29.54 68.60 2.03 44.66 16
21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16
22 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16
23 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16
24 O 0.12 3.76 7.85 65.85 0.52 4.28 16
25 N -0.36 -10.93 11.78 -48.93 -0.58 -11.51 16
26 C -0.09 -1.78 9.60 22.48 0.22 -1.57 16
27 C -0.12 -1.79 9.68 22.24 0.22 -1.58 16
28 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16
29 H 0.08 0.44 8.08 -2.39 -0.02 0.42 16
30 H 0.08 0.45 8.08 -2.39 -0.02 0.43 16
31 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16
32 H 0.12 2.62 7.89 -2.91 -0.02 2.60 16
33 H 0.20 5.02 7.57 -2.91 -0.02 5.00 16
34 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16
35 H 0.09 2.62 5.10 -2.38 -0.01 2.61 16
36 H 0.09 2.94 6.44 -2.39 -0.02 2.92 16
37 H 0.05 2.17 6.67 -2.39 -0.02 2.16 16
38 H 0.07 3.85 6.07 -2.39 -0.01 3.84 16
39 H 0.02 1.09 8.14 -2.39 -0.02 1.08 16
40 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16
41 H 0.14 2.26 7.22 -2.91 -0.02 2.24 16
42 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16
Total: -1.00 -66.47 354.05 6.20 -60.27
By element:
Atomic # 1 Polarization: 11.92 SS G_CDS: 1.04 Total: 12.96 kcal
Atomic # 6 Polarization: -9.22 SS G_CDS: 5.30 Total: -3.92 kcal
Atomic # 7 Polarization: -87.56 SS G_CDS: -2.62 Total: -90.18 kcal
Atomic # 8 Polarization: -24.24 SS G_CDS: 0.45 Total: -23.79 kcal
Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal
Total: -66.47 6.20 -60.27 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000103442144.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.015 kcal
(2) G-P(sol) polarization free energy of solvation -66.468 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.547 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.202 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.266 kcal
(6) G-S(sol) free energy of system = (1) + (5) 38.749 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds