Wall clock time and date at job start Tue Mar 31 2020 10:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38322 * 119.87778 * 2 1 4 4 C 1.38022 * 120.11904 * 180.02562 * 3 2 1 5 5 C 1.39317 * 119.87829 * 359.97438 * 4 3 2 6 6 C 1.48453 * 120.11947 * 179.97438 * 5 4 3 7 7 C 1.42189 * 126.84077 * 179.97438 * 6 5 4 8 8 C 1.36620 * 103.78843 * 179.97438 * 7 6 5 9 9 C 1.47531 * 126.82813 * 180.02562 * 8 7 6 10 10 O 1.21577 * 120.00273 * 4.65724 * 9 8 7 11 11 N 1.34782 * 119.99695 * 184.65502 * 9 8 7 12 12 C 1.46491 * 120.00198 * 4.12514 * 11 9 8 13 13 C 1.46500 * 119.99727 * 184.11569 * 11 9 8 14 14 H 1.09001 * 109.47234 * 0.02562 * 13 11 9 15 15 C 1.53002 * 109.47044 * 120.00098 * 13 11 9 16 16 C 1.50694 * 109.47512 * 240.00495 * 13 11 9 17 17 H 1.08002 * 119.99830 * 359.97438 * 16 13 11 18 18 C 1.37875 * 120.00503 * 180.02562 * 16 13 11 19 19 N 1.31520 * 119.99805 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 120.00490 * 179.97438 * 18 16 13 21 21 H 1.48505 * 109.47144 * 89.99663 * 20 18 16 22 22 H 1.48502 * 109.47566 * 209.99758 * 20 18 16 23 23 H 1.48496 * 109.47196 * 329.99817 * 20 18 16 24 24 O 1.34641 * 106.34257 * 0.26136 * 8 7 6 25 25 N 1.20877 * 111.74447 * 359.52720 * 24 8 7 26 26 C 1.39319 * 119.76415 * 0.25262 * 5 4 3 27 27 C 1.38022 * 119.87917 * 359.47212 * 26 5 4 28 28 H 1.09001 * 109.47235 * 90.00003 * 1 2 3 29 29 H 1.09003 * 109.47261 * 209.99751 * 1 2 3 30 30 H 1.08994 * 109.47205 * 329.99854 * 1 2 3 31 31 H 1.08000 * 119.93968 * 359.97438 * 3 2 1 32 32 H 1.08001 * 120.06148 * 180.02562 * 4 3 2 33 33 H 1.07996 * 128.10932 * 0.02562 * 7 6 5 34 34 H 1.08997 * 109.47594 * 84.22555 * 12 11 9 35 35 H 1.09006 * 109.46845 * 324.22366 * 12 11 9 36 36 H 1.09003 * 109.46994 * 204.22771 * 12 11 9 37 37 H 1.09001 * 109.46458 * 60.00317 * 15 13 11 38 38 H 1.08998 * 109.47350 * 179.97438 * 15 13 11 39 39 H 1.08996 * 109.47087 * 300.00350 * 15 13 11 40 40 H 0.96994 * 120.00520 * 180.02562 * 19 18 16 41 41 H 1.08004 * 120.06175 * 179.74337 * 26 5 4 42 42 H 1.08003 * 119.94211 * 180.24872 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1994 0.0000 4 6 3.5763 1.2052 -0.0005 5 6 4.2754 0.0001 -0.0005 6 6 5.7599 0.0001 -0.0017 7 6 6.6125 -1.1378 -0.0013 8 6 7.8696 -0.6029 -0.0034 9 6 9.1457 -1.3432 -0.0045 10 8 9.1449 -2.5560 -0.0890 11 7 10.3125 -0.6749 0.0882 12 6 10.3116 0.7773 0.2809 13 6 11.5817 -1.4009 -0.0035 14 1 11.3831 -2.4632 -0.1455 15 6 12.3881 -0.8702 -1.1905 16 6 12.3673 -1.2017 1.2669 17 1 11.9620 -0.5947 2.0629 18 6 13.6041 -1.7935 1.4127 19 7 14.0979 -2.5324 0.4431 20 14 14.5783 -1.5461 2.9871 21 1 14.2288 -2.6136 3.9585 22 1 16.0310 -1.6077 2.6853 23 1 14.2496 -0.2202 3.5694 24 8 7.7123 0.7343 0.0012 25 7 6.5449 1.0479 -0.0038 26 6 3.5764 -1.2050 -0.0053 27 6 2.1962 -1.1993 0.0010 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.6531 2.1330 -0.0004 32 1 4.1134 2.1422 -0.0001 33 1 6.3321 -2.1807 -0.0005 34 1 10.2045 1.0030 1.3419 35 1 9.4796 1.2163 -0.2698 36 1 11.2500 1.1931 -0.0861 37 1 12.5866 0.1922 -1.0488 38 1 13.3326 -1.4100 -1.2585 39 1 11.8198 -1.0143 -2.1093 40 1 14.9677 -2.9491 0.5457 41 1 4.1135 -2.1420 -0.0095 42 1 1.6532 -2.1330 0.0013 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103442144.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:51 Heat of formation + Delta-G solvation = 38.748650 kcal Electronic energy + Delta-G solvation = -25001.530848 eV Core-core repulsion = 21335.488442 eV Total energy + Delta-G solvation = -3666.042406 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -46.09258 -40.81618 -40.29886 -37.43121 -35.93475 -34.91100 -33.43840 -32.84847 -31.97565 -31.12545 -28.19137 -27.80092 -27.30577 -25.59967 -24.52553 -23.61478 -22.72739 -21.94552 -20.70650 -18.93649 -18.89146 -18.41940 -17.69244 -17.34582 -16.83052 -16.40388 -16.21620 -16.10963 -15.80771 -15.03332 -14.80609 -14.68196 -14.53735 -14.34635 -14.25441 -14.09952 -13.50084 -13.36862 -13.16426 -13.00642 -12.92975 -12.76899 -12.72804 -12.63702 -12.28511 -12.19305 -12.12573 -11.89592 -11.73037 -11.27941 -11.19749 -10.93782 -10.53715 -9.95865 -9.52780 -9.39039 -8.15834 -6.31848 -0.41695 -0.10721 0.40898 1.27478 1.42982 1.43230 1.47342 1.54646 1.90892 2.21185 2.44133 2.77111 2.81500 3.12801 3.18964 3.68074 3.82929 3.94065 3.97741 4.02820 4.17001 4.38980 4.43922 4.49630 4.65269 4.67279 4.72922 4.81423 4.85793 4.88591 4.88784 5.00655 5.01755 5.10244 5.25975 5.38960 5.39555 5.46952 5.49513 5.62067 5.62774 5.95922 5.97118 6.11016 6.50465 6.70750 6.85577 7.03007 7.38926 8.88857 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.032382 B = 0.002479 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.464357 B =11291.614416 C =11392.978933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.074 4.074 3 C -0.125 4.125 4 C -0.098 4.098 5 C -0.054 4.054 6 C 0.061 3.939 7 C -0.146 4.146 8 C -0.072 4.072 9 C 0.583 3.417 10 O -0.563 6.563 11 N -0.580 5.580 12 C 0.077 3.923 13 C 0.261 3.739 14 H 0.021 0.979 15 C -0.136 4.136 16 C -0.540 4.540 17 H 0.061 0.939 18 C 0.018 3.982 19 N -0.914 5.914 20 Si 0.964 3.036 21 H -0.282 1.282 22 H -0.279 1.279 23 H -0.264 1.264 24 O 0.118 5.882 25 N -0.358 5.358 26 C -0.094 4.094 27 C -0.123 4.123 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.148 0.852 32 H 0.124 0.876 33 H 0.199 0.801 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.050 0.950 38 H 0.074 0.926 39 H 0.025 0.975 40 H 0.266 0.734 41 H 0.139 0.861 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.682 7.702 -1.512 25.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.075 4.075 3 C -0.143 4.143 4 C -0.118 4.118 5 C -0.055 4.055 6 C -0.095 4.095 7 C -0.168 4.168 8 C -0.137 4.137 9 C 0.369 3.631 10 O -0.444 6.444 11 N -0.308 5.308 12 C -0.065 4.065 13 C 0.160 3.840 14 H 0.039 0.961 15 C -0.194 4.194 16 C -0.579 4.579 17 H 0.079 0.921 18 C -0.182 4.182 19 N -0.552 5.552 20 Si 0.789 3.211 21 H -0.208 1.208 22 H -0.205 1.205 23 H -0.188 1.188 24 O 0.048 5.952 25 N -0.061 5.061 26 C -0.114 4.114 27 C -0.141 4.141 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.166 0.834 32 H 0.142 0.858 33 H 0.216 0.784 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.157 0.843 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -24.642 8.319 -1.610 26.058 hybrid contribution 1.149 -0.908 0.696 1.621 sum -23.493 7.411 -0.914 24.651 Atomic orbital electron populations 1.20902 0.88722 1.04097 1.03475 1.20484 0.97961 0.92725 0.96341 1.21258 0.92934 0.99250 1.00869 1.21302 0.95207 0.96930 0.98333 1.17805 0.85895 0.95615 1.06218 1.22227 0.96077 0.88136 1.03041 1.23098 0.89090 1.02304 1.02272 1.24054 0.96923 0.83970 1.08747 1.17000 0.81872 0.85987 0.78284 1.90789 1.86263 1.13682 1.53645 1.48253 1.06021 1.09788 1.66783 1.22056 1.04069 0.78273 1.02148 1.18772 0.78422 0.91509 0.95289 0.96099 1.21928 1.01481 1.00642 0.95383 1.21510 1.02769 1.32172 1.01406 0.92126 1.25685 0.98297 0.94416 0.99782 1.69997 1.19018 1.32697 1.33532 0.85461 0.77654 0.78704 0.79234 1.20803 1.20464 1.18810 1.85122 1.20851 1.21876 1.67357 1.73903 0.89784 1.24271 1.18162 1.21380 0.95174 0.96868 0.97952 1.21306 0.93067 0.99203 1.00485 0.89888 0.90198 0.90399 0.83406 0.85820 0.78378 0.92096 0.89374 0.89321 0.93070 0.90778 0.95622 0.92474 0.84273 0.82910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 10.01 71.24 0.71 -0.14 16 2 C -0.07 -1.02 5.88 -19.82 -0.12 -1.13 16 3 C -0.13 -1.96 9.68 22.24 0.22 -1.75 16 4 C -0.10 -2.06 9.70 22.48 0.22 -1.84 16 5 C -0.05 -1.27 5.88 -20.03 -0.12 -1.39 16 6 C 0.06 1.72 7.05 42.99 0.30 2.02 16 7 C -0.15 -4.32 10.30 22.87 0.24 -4.08 16 8 C -0.07 -2.48 6.93 24.34 0.17 -2.31 16 9 C 0.58 24.99 7.67 86.69 0.67 25.66 16 10 O -0.56 -28.00 16.25 -3.96 -0.06 -28.07 16 11 N -0.58 -25.11 2.75 -830.60 -2.29 -27.40 16 12 C 0.08 2.62 9.07 127.77 1.16 3.78 16 13 C 0.26 13.38 2.62 44.24 0.12 13.49 16 14 H 0.02 1.26 6.91 -2.39 -0.02 1.25 16 15 C -0.14 -6.38 8.96 71.98 0.64 -5.74 16 16 C -0.54 -29.00 8.37 25.60 0.21 -28.79 16 17 H 0.06 3.19 7.65 -2.91 -0.02 3.17 16 18 C 0.02 0.99 5.30 84.65 0.45 1.44 16 19 N -0.91 -51.51 11.32 21.45 0.24 -51.27 16 20 Si 0.96 42.64 29.54 68.60 2.03 44.66 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 23 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 24 O 0.12 3.76 7.85 65.85 0.52 4.28 16 25 N -0.36 -10.93 11.78 -48.93 -0.58 -11.51 16 26 C -0.09 -1.78 9.60 22.48 0.22 -1.57 16 27 C -0.12 -1.79 9.68 22.24 0.22 -1.58 16 28 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.08 0.44 8.08 -2.39 -0.02 0.42 16 30 H 0.08 0.45 8.08 -2.39 -0.02 0.43 16 31 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 32 H 0.12 2.62 7.89 -2.91 -0.02 2.60 16 33 H 0.20 5.02 7.57 -2.91 -0.02 5.00 16 34 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.09 2.62 5.10 -2.38 -0.01 2.61 16 36 H 0.09 2.94 6.44 -2.39 -0.02 2.92 16 37 H 0.05 2.17 6.67 -2.39 -0.02 2.16 16 38 H 0.07 3.85 6.07 -2.39 -0.01 3.84 16 39 H 0.02 1.09 8.14 -2.39 -0.02 1.08 16 40 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 41 H 0.14 2.26 7.22 -2.91 -0.02 2.24 16 42 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -66.47 354.05 6.20 -60.27 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 1.04 Total: 12.96 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 5.30 Total: -3.92 kcal Atomic # 7 Polarization: -87.56 SS G_CDS: -2.62 Total: -90.18 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: 0.45 Total: -23.79 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -66.47 6.20 -60.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442144.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.015 kcal (2) G-P(sol) polarization free energy of solvation -66.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds