Wall clock time and date at job start Tue Mar 31 2020 11:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30455 * 125.97037 * 2 1 4 4 N 1.39929 * 108.93691 * 180.22623 * 3 2 1 5 5 C 1.40150 * 125.76754 * 179.75322 * 4 3 2 6 6 C 1.38849 * 120.06397 * 41.89995 * 5 4 3 7 7 C 1.38118 * 119.93321 * 179.70087 * 6 5 4 8 8 C 1.38279 * 120.06392 * 0.58017 * 7 6 5 9 9 C 1.38284 * 120.13826 * 359.72219 * 8 7 6 10 10 C 1.38115 * 120.06305 * 359.97438 * 9 8 7 11 11 C 1.34507 * 108.47849 * 359.75748 * 4 3 2 12 12 C 1.50694 * 126.31667 * 180.02562 * 11 4 3 13 13 C 1.38145 * 107.36943 * 359.97438 * 11 4 3 14 14 C 1.47271 * 126.42557 * 179.97438 * 13 11 4 15 15 O 1.21531 * 120.00027 * 89.99807 * 14 13 11 16 16 O 1.34760 * 119.99814 * 269.99969 * 14 13 11 17 17 C 1.45194 * 116.99811 * 179.97438 * 16 14 13 18 18 H 1.09005 * 109.47417 * 330.00096 * 17 16 14 19 19 C 1.52997 * 109.47470 * 90.00433 * 17 16 14 20 20 C 1.50701 * 109.47058 * 210.00067 * 17 16 14 21 21 H 1.08003 * 120.00064 * 0.02562 * 20 17 16 22 22 C 1.37878 * 120.00253 * 179.97438 * 20 17 16 23 23 N 1.31520 * 119.99699 * 0.02562 * 22 20 17 24 24 Si 1.86796 * 120.00458 * 179.97438 * 22 20 17 25 25 H 1.48495 * 109.47627 * 180.02562 * 24 22 20 26 26 H 1.48507 * 109.47149 * 300.00841 * 24 22 20 27 27 H 1.48505 * 109.46869 * 60.00436 * 24 22 20 28 28 H 1.08997 * 109.47184 * 270.18280 * 1 2 3 29 29 H 1.09004 * 109.47183 * 30.18331 * 1 2 3 30 30 H 1.08994 * 109.47263 * 150.18189 * 1 2 3 31 31 H 1.08003 * 120.03416 * 0.02562 * 6 5 4 32 32 H 1.08000 * 119.97039 * 180.30027 * 7 6 5 33 33 H 1.08004 * 119.93387 * 179.74158 * 8 7 6 34 34 H 1.07998 * 119.96834 * 180.02562 * 9 8 7 35 35 H 1.08004 * 120.03232 * 180.02562 * 10 9 8 36 36 H 1.09000 * 109.47013 * 275.08507 * 12 11 4 37 37 H 1.08995 * 109.47417 * 35.08469 * 12 11 4 38 38 H 1.09004 * 109.47359 * 155.08997 * 12 11 4 39 39 H 1.08997 * 109.47783 * 180.02562 * 19 17 16 40 40 H 1.09004 * 109.46564 * 299.99950 * 19 17 16 41 41 H 1.08991 * 109.47267 * 59.99277 * 19 17 16 42 42 H 0.97000 * 119.99908 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2732 1.0558 0.0000 4 7 3.6111 0.6459 -0.0052 5 6 4.7275 1.4932 -0.0117 6 6 4.7443 2.6277 0.7887 7 6 5.8484 3.4575 0.7848 8 6 6.9313 3.1660 -0.0241 9 6 6.9150 2.0403 -0.8271 10 6 5.8164 1.2033 -0.8229 11 6 3.6451 -0.6987 -0.0031 12 6 4.8814 -1.5603 -0.0065 13 6 2.3375 -1.1443 0.0041 14 6 1.8919 -2.5479 0.0082 15 8 1.7134 -3.1257 1.0623 16 8 1.6822 -3.1917 -1.1570 17 6 1.2445 -4.5737 -1.0770 18 1 1.6434 -5.0294 -0.1707 19 6 -0.2843 -4.6234 -1.0423 20 6 1.7443 -5.3295 -2.2812 21 1 2.3326 -4.8219 -3.0314 22 6 1.4516 -6.6692 -2.4247 23 7 0.7357 -7.2874 -1.5109 24 14 2.0706 -7.6058 -3.9176 25 1 1.6230 -9.0193 -3.8358 26 1 1.5261 -6.9852 -5.1521 27 1 3.5544 -7.5572 -3.9523 28 1 -0.3633 0.0033 1.0276 29 1 -0.3634 0.8884 -0.5167 30 1 -0.3633 -0.8916 -0.5110 31 1 3.8971 2.8581 1.4176 32 1 5.8642 4.3375 1.4108 33 1 7.7919 3.8186 -0.0286 34 1 7.7624 1.8149 -1.4575 35 1 5.8043 0.3240 -1.4499 36 1 5.2275 -1.6950 -1.0313 37 1 5.6627 -1.0771 0.5802 38 1 4.6484 -2.5320 0.4290 39 1 -0.6130 -5.6609 -0.9818 40 1 -0.6459 -4.0767 -0.1713 41 1 -0.6833 -4.1677 -1.9485 42 1 0.5294 -8.2298 -1.6120 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113693663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:26 Heat of formation + Delta-G solvation = 10.968892 kcal Electronic energy + Delta-G solvation = -25528.327111 eV Core-core repulsion = 21861.080084 eV Total energy + Delta-G solvation = -3667.247027 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.77028 -39.45138 -38.89054 -35.57335 -34.39791 -33.22923 -32.44380 -31.26163 -30.48934 -29.57516 -27.80067 -27.32621 -25.30609 -23.83297 -22.99001 -22.23965 -20.70672 -19.78440 -19.21946 -17.86360 -16.94281 -16.58147 -16.42480 -15.90687 -15.36437 -14.88612 -14.72566 -14.53520 -14.36267 -13.90862 -13.82250 -13.42405 -13.23535 -13.03173 -12.94511 -12.49759 -12.42399 -12.20112 -12.07263 -11.87482 -11.79849 -11.48111 -11.19845 -11.06424 -10.85776 -10.73342 -10.37685 -10.27926 -9.95492 -9.69767 -9.51601 -9.37766 -8.94241 -8.87857 -8.48268 -8.30445 -6.17349 -4.24260 0.62223 0.96287 1.79756 2.18019 2.46975 2.88459 3.26493 3.30233 3.32719 3.34593 3.85005 4.33203 4.41862 4.44293 4.54211 4.64743 4.75177 4.85841 4.98588 5.12782 5.15445 5.29258 5.31097 5.41364 5.59100 5.67301 5.72572 5.73408 5.84357 5.92519 5.94493 5.99940 6.07586 6.10548 6.39829 6.50917 6.67260 6.91169 6.93416 7.02044 7.17427 7.56754 7.60438 7.73898 7.94016 8.15310 8.65950 8.90679 9.41072 10.90016 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.018638 B = 0.003269 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.955956 B = 8564.184441 C = 9587.670004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.127 3.873 3 N -0.293 5.293 4 N -0.320 5.320 5 C 0.154 3.846 6 C -0.107 4.107 7 C -0.104 4.104 8 C -0.121 4.121 9 C -0.100 4.100 10 C -0.124 4.124 11 C 0.136 3.864 12 C -0.101 4.101 13 C -0.243 4.243 14 C 0.537 3.463 15 O -0.511 6.511 16 O -0.347 6.347 17 C 0.214 3.786 18 H 0.047 0.953 19 C -0.155 4.155 20 C -0.521 4.521 21 H 0.068 0.932 22 C 0.063 3.937 23 N -0.889 5.889 24 Si 0.911 3.089 25 H -0.285 1.285 26 H -0.274 1.274 27 H -0.275 1.275 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.017 0.983 41 H 0.037 0.963 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.125 19.273 2.969 21.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.041 4.041 3 N -0.112 5.112 4 N -0.095 5.095 5 C 0.063 3.937 6 C -0.126 4.126 7 C -0.123 4.123 8 C -0.139 4.139 9 C -0.119 4.119 10 C -0.144 4.144 11 C 0.009 3.991 12 C -0.159 4.159 13 C -0.256 4.256 14 C 0.378 3.622 15 O -0.400 6.400 16 O -0.263 6.263 17 C 0.161 3.839 18 H 0.065 0.935 19 C -0.213 4.213 20 C -0.559 4.559 21 H 0.086 0.914 22 C -0.139 4.139 23 N -0.527 5.527 24 Si 0.738 3.262 25 H -0.210 1.210 26 H -0.199 1.199 27 H -0.200 1.200 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.036 0.964 41 H 0.056 0.944 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.053 20.166 3.298 22.773 hybrid contribution 0.146 -1.479 -0.666 1.629 sum 10.199 18.687 2.631 21.451 Atomic orbital electron populations 1.20326 0.85533 1.04200 1.03688 1.22435 0.97109 0.88554 0.95958 1.77194 0.84907 1.21997 1.27138 1.45282 1.04459 1.03131 1.56600 1.17452 0.85315 0.92493 0.98468 1.21079 0.99339 0.93987 0.98235 1.21079 0.92811 0.99298 0.99069 1.21281 0.98716 0.97400 0.96543 1.21037 0.97644 0.94210 0.99014 1.21194 0.93403 1.01511 0.98331 1.21389 0.96336 0.83705 0.97659 1.20701 0.92127 0.98980 1.04123 1.19313 0.91999 0.92720 1.21521 1.19905 0.73946 0.85154 0.83192 1.90791 1.48332 1.67691 1.33197 1.86658 1.76354 1.31443 1.31836 1.20663 0.92056 0.71981 0.99155 0.93548 1.22164 0.97388 1.04061 0.97681 1.20986 1.34414 0.93991 1.06492 0.91381 1.24880 0.94964 0.97014 0.97068 1.69893 1.37659 1.11056 1.34064 0.86341 0.79226 0.78415 0.82186 1.21038 1.19943 1.20000 0.89743 0.90131 0.89606 0.84924 0.85062 0.85355 0.84858 0.84806 0.88966 0.90224 0.88758 0.88228 0.96424 0.94372 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 10.28 36.01 0.37 -0.72 16 2 C 0.13 2.16 7.27 -81.98 -0.60 1.57 16 3 N -0.29 -4.84 12.32 33.92 0.42 -4.43 16 4 N -0.32 -4.90 3.67 -6.50 -0.02 -4.93 16 5 C 0.15 1.90 6.10 -83.60 -0.51 1.39 16 6 C -0.11 -1.14 9.83 -39.40 -0.39 -1.53 16 7 C -0.10 -0.82 10.04 -39.61 -0.40 -1.22 16 8 C -0.12 -0.85 10.04 -39.55 -0.40 -1.25 16 9 C -0.10 -0.78 10.04 -39.61 -0.40 -1.17 16 10 C -0.12 -1.26 8.54 -39.40 -0.34 -1.59 16 11 C 0.14 2.21 6.82 -81.46 -0.56 1.65 16 12 C -0.10 -1.32 8.62 36.00 0.31 -1.01 16 13 C -0.24 -4.61 6.00 -105.06 -0.63 -5.25 16 14 C 0.54 12.03 7.01 34.40 0.24 12.27 16 15 O -0.51 -12.66 16.37 -19.29 -0.32 -12.97 16 16 O -0.35 -8.55 9.87 -40.65 -0.40 -8.95 16 17 C 0.21 5.78 2.56 -27.88 -0.07 5.71 16 18 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 19 C -0.16 -3.94 9.33 37.16 0.35 -3.60 16 20 C -0.52 -14.62 8.90 -34.44 -0.31 -14.92 16 21 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 22 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 23 N -0.89 -25.16 11.32 55.43 0.63 -24.54 16 24 Si 0.91 20.98 29.54 -169.99 -5.02 15.96 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.26 8.00 -51.93 -0.42 0.85 16 31 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 32 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 33 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 34 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.13 1.28 6.61 -52.48 -0.35 0.93 16 36 H 0.09 1.05 7.59 -51.93 -0.39 0.66 16 37 H 0.08 0.84 7.50 -51.93 -0.39 0.45 16 38 H 0.09 1.36 7.84 -51.93 -0.41 0.95 16 39 H 0.10 2.69 6.07 -51.93 -0.32 2.37 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 362.80 15.07 5.47 5.47 Total: -1.00 -33.06 362.80 -8.23 -41.29 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -5.57 Total: 1.14 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -3.41 Total: -8.04 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 1.02 Total: -33.89 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.72 Total: -21.92 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.06 -8.23 -41.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113693663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.259 kcal (2) G-P(sol) polarization free energy of solvation -33.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds