Wall clock time and date at job start Tue Mar 31 2020 11:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30455 * 125.97037 * 2 1 4 4 N 1.39929 * 108.93691 * 180.22623 * 3 2 1 5 5 C 1.40150 * 125.76754 * 179.75322 * 4 3 2 6 6 C 1.38849 * 120.06397 * 41.89995 * 5 4 3 7 7 C 1.38118 * 119.93321 * 179.70087 * 6 5 4 8 8 C 1.38279 * 120.06392 * 0.58017 * 7 6 5 9 9 C 1.38284 * 120.13826 * 359.72219 * 8 7 6 10 10 C 1.38115 * 120.06305 * 359.97438 * 9 8 7 11 11 C 1.34507 * 108.47849 * 359.75748 * 4 3 2 12 12 C 1.50694 * 126.31667 * 180.02562 * 11 4 3 13 13 C 1.38145 * 107.36943 * 359.97438 * 11 4 3 14 14 C 1.47271 * 126.42557 * 179.97438 * 13 11 4 15 15 O 1.21531 * 120.00027 * 89.99807 * 14 13 11 16 16 O 1.34760 * 119.99814 * 269.99969 * 14 13 11 17 17 C 1.45194 * 116.99811 * 179.97438 * 16 14 13 18 18 H 1.09005 * 109.47417 * 330.00096 * 17 16 14 19 19 C 1.52997 * 109.47470 * 90.00433 * 17 16 14 20 20 C 1.50701 * 109.47058 * 210.00067 * 17 16 14 21 21 H 1.08003 * 120.00064 * 0.02562 * 20 17 16 22 22 C 1.37878 * 120.00253 * 179.97438 * 20 17 16 23 23 N 1.31520 * 119.99699 * 0.02562 * 22 20 17 24 24 Si 1.86796 * 120.00458 * 179.97438 * 22 20 17 25 25 H 1.48495 * 109.47627 * 180.02562 * 24 22 20 26 26 H 1.48507 * 109.47149 * 300.00841 * 24 22 20 27 27 H 1.48505 * 109.46869 * 60.00436 * 24 22 20 28 28 H 1.08997 * 109.47184 * 270.18280 * 1 2 3 29 29 H 1.09004 * 109.47183 * 30.18331 * 1 2 3 30 30 H 1.08994 * 109.47263 * 150.18189 * 1 2 3 31 31 H 1.08003 * 120.03416 * 0.02562 * 6 5 4 32 32 H 1.08000 * 119.97039 * 180.30027 * 7 6 5 33 33 H 1.08004 * 119.93387 * 179.74158 * 8 7 6 34 34 H 1.07998 * 119.96834 * 180.02562 * 9 8 7 35 35 H 1.08004 * 120.03232 * 180.02562 * 10 9 8 36 36 H 1.09000 * 109.47013 * 275.08507 * 12 11 4 37 37 H 1.08995 * 109.47417 * 35.08469 * 12 11 4 38 38 H 1.09004 * 109.47359 * 155.08997 * 12 11 4 39 39 H 1.08997 * 109.47783 * 180.02562 * 19 17 16 40 40 H 1.09004 * 109.46564 * 299.99950 * 19 17 16 41 41 H 1.08991 * 109.47267 * 59.99277 * 19 17 16 42 42 H 0.97000 * 119.99908 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2732 1.0558 0.0000 4 7 3.6111 0.6459 -0.0052 5 6 4.7275 1.4932 -0.0117 6 6 4.7443 2.6277 0.7887 7 6 5.8484 3.4575 0.7848 8 6 6.9313 3.1660 -0.0241 9 6 6.9150 2.0403 -0.8271 10 6 5.8164 1.2033 -0.8229 11 6 3.6451 -0.6987 -0.0031 12 6 4.8814 -1.5603 -0.0065 13 6 2.3375 -1.1443 0.0041 14 6 1.8919 -2.5479 0.0082 15 8 1.7134 -3.1257 1.0623 16 8 1.6822 -3.1917 -1.1570 17 6 1.2445 -4.5737 -1.0770 18 1 1.6434 -5.0294 -0.1707 19 6 -0.2843 -4.6234 -1.0423 20 6 1.7443 -5.3295 -2.2812 21 1 2.3326 -4.8219 -3.0314 22 6 1.4516 -6.6692 -2.4247 23 7 0.7357 -7.2874 -1.5109 24 14 2.0706 -7.6058 -3.9176 25 1 1.6230 -9.0193 -3.8358 26 1 1.5261 -6.9852 -5.1521 27 1 3.5544 -7.5572 -3.9523 28 1 -0.3633 0.0033 1.0276 29 1 -0.3634 0.8884 -0.5167 30 1 -0.3633 -0.8916 -0.5110 31 1 3.8971 2.8581 1.4176 32 1 5.8642 4.3375 1.4108 33 1 7.7919 3.8186 -0.0286 34 1 7.7624 1.8149 -1.4575 35 1 5.8043 0.3240 -1.4499 36 1 5.2275 -1.6950 -1.0313 37 1 5.6627 -1.0771 0.5802 38 1 4.6484 -2.5320 0.4290 39 1 -0.6130 -5.6609 -0.9818 40 1 -0.6459 -4.0767 -0.1713 41 1 -0.6833 -4.1677 -1.9485 42 1 0.5294 -8.2298 -1.6120 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113693663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:26 Heat of formation + Delta-G solvation = -6.587477 kcal Electronic energy + Delta-G solvation = -25529.088413 eV Core-core repulsion = 21861.080084 eV Total energy + Delta-G solvation = -3668.008328 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.98751 -41.03154 -39.94296 -37.52774 -35.48049 -35.29861 -33.60357 -32.00037 -31.72830 -31.33764 -29.04564 -28.41065 -27.44656 -25.20507 -23.75360 -23.48467 -22.39778 -20.88635 -20.82169 -19.16309 -18.59456 -18.40339 -17.42073 -17.11352 -16.95413 -16.53395 -16.30073 -15.71792 -15.34370 -14.98003 -14.86725 -14.61943 -14.48212 -14.30644 -14.19313 -13.90841 -13.82465 -13.56910 -13.36062 -13.24361 -13.12433 -13.00632 -12.80802 -12.56119 -12.38322 -12.28341 -12.17266 -12.01166 -11.60192 -11.49741 -11.00999 -10.92829 -10.58927 -10.10634 -10.04407 -9.38510 -8.27476 -6.44707 -0.25271 0.29712 0.69540 1.04572 1.11823 1.14568 1.43112 1.46851 1.55164 2.11504 2.43982 2.65891 3.02952 3.28155 3.36908 3.66597 3.86326 3.89345 4.04766 4.10897 4.19205 4.38558 4.40019 4.40611 4.50547 4.53013 4.57361 4.60572 4.72010 4.78839 4.80713 4.83424 4.87628 4.98505 5.13626 5.19783 5.32886 5.36651 5.46639 5.48258 5.61808 5.69628 5.88086 6.03283 6.04748 6.33101 6.58804 6.91275 7.26604 8.80110 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.018638 B = 0.003269 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.955956 B = 8564.184441 C = 9587.670004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.120 3.880 3 N -0.304 5.304 4 N -0.310 5.310 5 C 0.110 3.890 6 C -0.119 4.119 7 C -0.101 4.101 8 C -0.107 4.107 9 C -0.096 4.096 10 C -0.130 4.130 11 C 0.144 3.856 12 C -0.099 4.099 13 C -0.290 4.290 14 C 0.546 3.454 15 O -0.542 6.542 16 O -0.354 6.354 17 C 0.216 3.784 18 H 0.010 0.990 19 C -0.143 4.143 20 C -0.549 4.549 21 H 0.067 0.933 22 C 0.018 3.982 23 N -0.916 5.916 24 Si 0.983 3.017 25 H -0.277 1.277 26 H -0.265 1.265 27 H -0.266 1.266 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.072 0.928 31 H 0.122 0.878 32 H 0.158 0.842 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.135 0.865 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.025 0.975 41 H 0.046 0.954 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.659 21.163 1.757 24.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.047 4.047 3 N -0.123 5.123 4 N -0.084 5.084 5 C 0.020 3.980 6 C -0.139 4.139 7 C -0.120 4.120 8 C -0.125 4.125 9 C -0.115 4.115 10 C -0.150 4.150 11 C 0.015 3.985 12 C -0.157 4.157 13 C -0.302 4.302 14 C 0.390 3.610 15 O -0.433 6.433 16 O -0.269 6.269 17 C 0.163 3.837 18 H 0.028 0.972 19 C -0.201 4.201 20 C -0.587 4.587 21 H 0.085 0.915 22 C -0.182 4.182 23 N -0.554 5.554 24 Si 0.806 3.194 25 H -0.202 1.202 26 H -0.190 1.190 27 H -0.191 1.191 28 H 0.115 0.885 29 H 0.122 0.878 30 H 0.091 0.909 31 H 0.140 0.860 32 H 0.176 0.824 33 H 0.182 0.818 34 H 0.181 0.819 35 H 0.153 0.847 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.044 0.956 41 H 0.065 0.935 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.595 22.107 2.094 25.529 hybrid contribution -0.481 -1.900 -0.228 1.973 sum 12.114 20.207 1.867 23.634 Atomic orbital electron populations 1.20416 0.83948 1.04641 1.04651 1.22801 0.98324 0.87850 0.95760 1.77134 0.85728 1.21887 1.27568 1.45508 1.04828 1.03092 1.54931 1.17901 0.85305 0.93531 1.01220 1.21169 1.00274 0.94141 0.98321 1.21426 0.91926 0.99401 0.99210 1.21757 0.99117 0.97051 0.94614 1.21436 0.97451 0.93623 0.98967 1.21356 0.93421 1.02185 0.98051 1.21752 0.96332 0.84590 0.95782 1.20815 0.91614 0.97630 1.05655 1.19223 0.93941 0.90975 1.26085 1.20388 0.72552 0.86101 0.81982 1.90754 1.49723 1.68835 1.33967 1.86655 1.76718 1.30365 1.33211 1.20429 0.92708 0.73087 0.97441 0.97250 1.21996 0.96501 1.03145 0.98438 1.21243 1.35526 0.94991 1.06905 0.91492 1.25823 0.94663 0.97575 1.00121 1.70013 1.38055 1.11544 1.35751 0.85236 0.78953 0.77016 0.78230 1.20172 1.18982 1.19098 0.88506 0.87758 0.90949 0.86009 0.82399 0.81818 0.81895 0.84691 0.87071 0.87394 0.90693 0.89844 0.95601 0.93501 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.22 10.28 71.24 0.73 -1.48 16 2 C 0.12 4.20 7.27 43.54 0.32 4.51 16 3 N -0.30 -10.17 12.32 -46.61 -0.57 -10.75 16 4 N -0.31 -9.52 3.67 -174.48 -0.64 -10.16 16 5 C 0.11 2.61 6.10 38.10 0.23 2.85 16 6 C -0.12 -2.40 9.83 22.39 0.22 -2.18 16 7 C -0.10 -1.28 10.04 22.25 0.22 -1.06 16 8 C -0.11 -1.03 10.04 22.29 0.22 -0.81 16 9 C -0.10 -1.12 10.04 22.25 0.22 -0.89 16 10 C -0.13 -2.36 8.54 22.38 0.19 -2.17 16 11 C 0.14 4.79 6.82 42.13 0.29 5.08 16 12 C -0.10 -2.58 8.62 71.23 0.61 -1.96 16 13 C -0.29 -11.44 6.00 -20.15 -0.12 -11.56 16 14 C 0.55 25.79 7.01 70.20 0.49 26.29 16 15 O -0.54 -28.45 16.37 19.74 0.32 -28.13 16 16 O -0.35 -18.22 9.87 -56.70 -0.56 -18.78 16 17 C 0.22 12.21 2.56 29.85 0.08 12.29 16 18 H 0.01 0.61 7.16 -2.38 -0.02 0.59 16 19 C -0.14 -7.53 9.33 71.98 0.67 -6.86 16 20 C -0.55 -31.55 8.90 25.60 0.23 -31.32 16 21 H 0.07 3.76 7.81 -2.91 -0.02 3.74 16 22 C 0.02 1.00 5.30 84.65 0.45 1.45 16 23 N -0.92 -52.73 11.32 21.45 0.24 -52.49 16 24 Si 0.98 42.77 29.54 68.60 2.03 44.80 16 25 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 28 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.07 2.22 8.00 -2.39 -0.02 2.20 16 31 H 0.12 2.62 8.06 -2.91 -0.02 2.60 16 32 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 33 H 0.16 0.48 8.06 -2.91 -0.02 0.46 16 34 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 35 H 0.14 2.34 6.61 -2.91 -0.02 2.32 16 36 H 0.11 2.45 7.59 -2.39 -0.02 2.43 16 37 H 0.11 2.14 7.50 -2.39 -0.02 2.13 16 38 H 0.07 2.25 7.84 -2.39 -0.02 2.23 16 39 H 0.08 4.66 6.07 -2.39 -0.01 4.65 16 40 H 0.02 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -74.53 362.80 6.91 -67.62 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 1.03 Total: 15.73 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: 5.06 Total: -7.83 kcal Atomic # 7 Polarization: -72.42 SS G_CDS: -0.97 Total: -73.39 kcal Atomic # 8 Polarization: -46.68 SS G_CDS: -0.24 Total: -46.91 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -74.53 6.91 -67.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113693663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.032 kcal (2) G-P(sol) polarization free energy of solvation -74.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds