Wall clock time and date at job start Tue Mar 31 2020 11:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30450 * 125.97353 * 2 1 4 4 N 1.39929 * 108.93757 * 180.13831 * 3 2 1 5 5 C 1.40151 * 125.76579 * 179.87663 * 4 3 2 6 6 C 1.38859 * 120.06450 * 324.69067 * 5 4 3 7 7 C 1.38115 * 119.93033 * 179.97438 * 6 5 4 8 8 C 1.38273 * 120.06989 * 0.02562 * 7 6 5 9 9 C 1.38279 * 120.13657 * 359.97438 * 8 7 6 10 10 C 1.38117 * 120.06739 * 0.02562 * 9 8 7 11 11 C 1.34513 * 108.47871 * 359.61145 * 4 3 2 12 12 C 1.50697 * 126.31314 * 180.19158 * 11 4 3 13 13 C 1.38142 * 107.36497 * 0.22832 * 11 4 3 14 14 C 1.47274 * 126.41828 * 180.02562 * 13 11 4 15 15 O 1.21527 * 120.00076 * 90.00064 * 14 13 11 16 16 O 1.34753 * 119.99520 * 269.99313 * 14 13 11 17 17 C 1.45200 * 116.99713 * 180.02562 * 16 14 13 18 18 H 1.09003 * 109.47204 * 30.00405 * 17 16 14 19 19 C 1.53008 * 109.47297 * 270.00395 * 17 16 14 20 20 C 1.50700 * 109.47106 * 150.00392 * 17 16 14 21 21 H 1.08002 * 119.99993 * 0.02562 * 20 17 16 22 22 C 1.37878 * 119.99925 * 179.97438 * 20 17 16 23 23 N 1.31516 * 120.00364 * 0.02562 * 22 20 17 24 24 Si 1.86801 * 119.99950 * 179.97438 * 22 20 17 25 25 H 1.48502 * 109.47052 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47137 * 120.00238 * 24 22 20 27 27 H 1.48503 * 109.47115 * 240.00247 * 24 22 20 28 28 H 1.08990 * 109.47424 * 270.28858 * 1 2 3 29 29 H 1.09007 * 109.46771 * 30.28711 * 1 2 3 30 30 H 1.09001 * 109.47413 * 150.28316 * 1 2 3 31 31 H 1.07998 * 120.03134 * 0.25558 * 6 5 4 32 32 H 1.08000 * 119.96136 * 179.97438 * 7 6 5 33 33 H 1.07998 * 119.93174 * 179.97438 * 8 7 6 34 34 H 1.08007 * 119.96902 * 179.97438 * 9 8 7 35 35 H 1.08004 * 120.03052 * 180.02562 * 10 9 8 36 36 H 1.09001 * 109.46910 * 90.02919 * 12 11 4 37 37 H 1.09002 * 109.46783 * 210.02446 * 12 11 4 38 38 H 1.09000 * 109.47264 * 330.02234 * 12 11 4 39 39 H 1.08997 * 109.46685 * 59.99985 * 19 17 16 40 40 H 1.08999 * 109.46961 * 180.02562 * 19 17 16 41 41 H 1.09003 * 109.47001 * 300.00134 * 19 17 16 42 42 H 0.96998 * 120.00325 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2733 1.0557 0.0000 4 7 3.6112 0.6458 -0.0032 5 6 4.7275 1.4931 -0.0066 6 6 4.6870 2.6944 -0.7019 7 6 5.7885 3.5275 -0.7030 8 6 6.9311 3.1663 -0.0131 9 6 6.9746 1.9706 0.6802 10 6 5.8763 1.1332 0.6851 11 6 3.6451 -0.6989 0.0035 12 6 4.8815 -1.5605 0.0070 13 6 2.3374 -1.1443 0.0056 14 6 1.8919 -2.5480 0.0131 15 8 1.7078 -3.1215 1.0686 16 8 1.6882 -3.1964 -1.1505 17 6 1.2489 -4.5778 -1.0672 18 1 0.6631 -4.7187 -0.1588 19 6 2.4694 -5.5000 -1.0351 20 6 0.4009 -4.9086 -2.2682 21 1 0.2113 -4.1559 -3.0192 22 6 -0.1322 -6.1724 -2.4088 23 7 0.0990 -7.0891 -1.4945 24 14 -1.1840 -6.5822 -3.8971 25 1 -1.2923 -5.3864 -4.7711 26 1 -0.5565 -7.6939 -4.6557 27 1 -2.5388 -6.9921 -3.4481 28 1 -0.3634 0.0052 1.0275 29 1 -0.3633 0.8875 -0.5183 30 1 -0.3634 -0.8925 -0.5094 31 1 3.7934 2.9790 -1.2375 32 1 5.7576 4.4618 -1.2439 33 1 7.7913 3.8192 -0.0158 34 1 7.8687 1.6909 1.2178 35 1 5.9108 0.1997 1.2272 36 1 5.1799 -1.7635 1.0356 37 1 4.6705 -2.5007 -0.5024 38 1 5.6882 -1.0404 -0.5095 39 1 3.0827 -5.2608 -0.1664 40 1 2.1396 -6.5371 -0.9730 41 1 3.0553 -5.3592 -1.9434 42 1 -0.2763 -7.9780 -1.5932 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113693665.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:31 Heat of formation + Delta-G solvation = 11.643974 kcal Electronic energy + Delta-G solvation = -25525.653829 eV Core-core repulsion = 21858.436076 eV Total energy + Delta-G solvation = -3667.217753 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.80114 -39.45916 -38.89783 -35.58289 -34.42615 -33.23407 -32.51597 -31.23274 -30.49389 -29.58622 -27.79527 -27.36516 -25.31768 -23.85571 -22.98666 -22.23805 -20.71815 -19.78918 -19.21374 -17.89016 -16.92095 -16.59417 -16.48179 -15.79166 -15.44268 -14.93683 -14.73017 -14.64592 -14.26596 -13.93751 -13.81566 -13.46026 -13.23464 -13.03220 -12.96222 -12.51821 -12.42103 -12.19696 -12.12399 -11.89666 -11.71926 -11.48121 -11.22511 -11.06752 -10.83530 -10.76037 -10.34684 -10.28559 -10.02385 -9.71056 -9.52941 -9.37972 -8.94933 -8.87189 -8.48918 -8.26275 -6.17596 -4.24121 0.59991 0.95770 1.82554 2.15260 2.46601 2.87417 3.24454 3.31395 3.35325 3.37310 3.84464 4.32628 4.38346 4.41318 4.53312 4.64259 4.74344 4.83058 4.98180 5.12065 5.15590 5.28143 5.30506 5.34324 5.58248 5.70055 5.71199 5.74528 5.78922 5.92657 5.93549 6.01672 6.07967 6.11221 6.39662 6.51479 6.65097 6.88090 6.91537 7.00061 7.15715 7.55848 7.60531 7.72553 7.93403 8.14783 8.65757 8.91009 9.41407 10.89911 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.022625 B = 0.003024 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.292019 B = 9257.891046 C = 9582.246170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.129 3.871 3 N -0.294 5.294 4 N -0.318 5.318 5 C 0.157 3.843 6 C -0.109 4.109 7 C -0.101 4.101 8 C -0.124 4.124 9 C -0.099 4.099 10 C -0.133 4.133 11 C 0.132 3.868 12 C -0.103 4.103 13 C -0.242 4.242 14 C 0.537 3.463 15 O -0.510 6.510 16 O -0.347 6.347 17 C 0.213 3.787 18 H 0.048 0.952 19 C -0.155 4.155 20 C -0.519 4.519 21 H 0.070 0.930 22 C 0.062 3.938 23 N -0.889 5.889 24 Si 0.911 3.089 25 H -0.270 1.270 26 H -0.282 1.282 27 H -0.281 1.281 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.016 0.984 40 H 0.100 0.900 41 H 0.037 0.963 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.732 18.403 2.895 22.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.038 4.038 3 N -0.113 5.113 4 N -0.092 5.092 5 C 0.066 3.934 6 C -0.129 4.129 7 C -0.120 4.120 8 C -0.143 4.143 9 C -0.117 4.117 10 C -0.153 4.153 11 C 0.006 3.994 12 C -0.161 4.161 13 C -0.254 4.254 14 C 0.378 3.622 15 O -0.399 6.399 16 O -0.263 6.263 17 C 0.160 3.840 18 H 0.065 0.935 19 C -0.213 4.213 20 C -0.557 4.557 21 H 0.088 0.912 22 C -0.140 4.140 23 N -0.527 5.527 24 Si 0.738 3.262 25 H -0.195 1.195 26 H -0.207 1.207 27 H -0.207 1.207 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.153 0.847 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.100 0.900 39 H 0.035 0.965 40 H 0.118 0.882 41 H 0.056 0.944 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.693 19.289 3.208 23.313 hybrid contribution -0.572 -1.278 -0.611 1.528 sum 12.120 18.011 2.597 21.865 Atomic orbital electron populations 1.20352 0.85382 1.04388 1.03758 1.22470 0.97195 0.88491 0.95630 1.77186 0.84841 1.22018 1.27235 1.45310 1.04549 1.03135 1.56254 1.17494 0.84882 0.91811 0.99249 1.21048 0.99819 0.93256 0.98735 1.21083 0.92506 0.99426 0.98980 1.21264 0.98377 0.96930 0.97699 1.21017 0.97820 0.93927 0.98973 1.21191 0.92742 1.01669 0.99717 1.21356 0.96293 0.83764 0.97988 1.20767 0.92257 0.99120 1.04000 1.19325 0.91967 0.92777 1.21307 1.19901 0.74057 0.85050 0.83214 1.90790 1.47910 1.68181 1.33053 1.86661 1.76293 1.31455 1.31889 1.20683 0.92906 0.71083 0.99280 0.93467 1.22170 0.97272 1.04265 0.97569 1.21068 1.30534 0.97525 1.06558 0.91223 1.24883 0.96377 0.95636 0.97080 1.69905 1.44550 1.04237 1.34026 0.86234 0.79685 0.78475 0.81845 1.19451 1.20749 1.20735 0.89719 0.90118 0.89319 0.84726 0.85036 0.85380 0.84911 0.84770 0.89209 0.88605 0.89970 0.96523 0.88173 0.94426 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.28 36.01 0.37 -0.78 16 2 C 0.13 2.23 7.27 -81.98 -0.60 1.63 16 3 N -0.29 -4.86 12.25 33.92 0.42 -4.45 16 4 N -0.32 -4.86 3.70 -6.50 -0.02 -4.88 16 5 C 0.16 1.94 6.26 -83.60 -0.52 1.42 16 6 C -0.11 -1.17 9.76 -39.40 -0.38 -1.56 16 7 C -0.10 -0.81 10.04 -39.61 -0.40 -1.21 16 8 C -0.12 -0.87 10.04 -39.55 -0.40 -1.27 16 9 C -0.10 -0.74 10.04 -39.61 -0.40 -1.14 16 10 C -0.13 -1.31 8.25 -39.40 -0.33 -1.63 16 11 C 0.13 2.12 6.84 -81.45 -0.56 1.57 16 12 C -0.10 -1.29 8.41 36.00 0.30 -0.99 16 13 C -0.24 -4.57 6.00 -105.06 -0.63 -5.20 16 14 C 0.54 11.99 7.10 34.40 0.24 12.23 16 15 O -0.51 -12.59 16.37 -19.29 -0.32 -12.91 16 16 O -0.35 -8.54 9.87 -40.64 -0.40 -8.94 16 17 C 0.21 5.74 2.56 -27.88 -0.07 5.67 16 18 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 19 C -0.16 -3.91 9.33 37.16 0.35 -3.56 16 20 C -0.52 -14.59 8.90 -34.44 -0.31 -14.89 16 21 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 22 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 23 N -0.89 -25.17 11.32 55.43 0.63 -24.54 16 24 Si 0.91 21.06 29.54 -169.99 -5.02 16.04 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 30 H 0.09 1.36 8.01 -51.93 -0.42 0.95 16 31 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 33 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 34 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 35 H 0.13 1.21 6.06 -52.48 -0.32 0.89 16 36 H 0.09 0.95 7.72 -51.93 -0.40 0.55 16 37 H 0.10 1.31 7.97 -51.93 -0.41 0.90 16 38 H 0.08 0.82 6.86 -51.93 -0.36 0.47 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.10 2.69 6.07 -51.93 -0.32 2.37 16 41 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 361.49 15.07 5.45 5.45 Total: -1.00 -33.12 361.49 -8.21 -41.32 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -5.52 Total: 0.99 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -3.42 Total: -8.09 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 1.02 Total: -33.87 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.72 Total: -21.85 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.12 -8.21 -41.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113693665.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.969 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds