Wall clock time and date at job start Tue Mar 31 2020 11:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30450 * 125.97353 * 2 1 4 4 N 1.39929 * 108.93757 * 180.13831 * 3 2 1 5 5 C 1.40151 * 125.76579 * 179.87663 * 4 3 2 6 6 C 1.38859 * 120.06450 * 324.69067 * 5 4 3 7 7 C 1.38115 * 119.93033 * 179.97438 * 6 5 4 8 8 C 1.38273 * 120.06989 * 0.02562 * 7 6 5 9 9 C 1.38279 * 120.13657 * 359.97438 * 8 7 6 10 10 C 1.38117 * 120.06739 * 0.02562 * 9 8 7 11 11 C 1.34513 * 108.47871 * 359.61145 * 4 3 2 12 12 C 1.50697 * 126.31314 * 180.19158 * 11 4 3 13 13 C 1.38142 * 107.36497 * 0.22832 * 11 4 3 14 14 C 1.47274 * 126.41828 * 180.02562 * 13 11 4 15 15 O 1.21527 * 120.00076 * 90.00064 * 14 13 11 16 16 O 1.34753 * 119.99520 * 269.99313 * 14 13 11 17 17 C 1.45200 * 116.99713 * 180.02562 * 16 14 13 18 18 H 1.09003 * 109.47204 * 30.00405 * 17 16 14 19 19 C 1.53008 * 109.47297 * 270.00395 * 17 16 14 20 20 C 1.50700 * 109.47106 * 150.00392 * 17 16 14 21 21 H 1.08002 * 119.99993 * 0.02562 * 20 17 16 22 22 C 1.37878 * 119.99925 * 179.97438 * 20 17 16 23 23 N 1.31516 * 120.00364 * 0.02562 * 22 20 17 24 24 Si 1.86801 * 119.99950 * 179.97438 * 22 20 17 25 25 H 1.48502 * 109.47052 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47137 * 120.00238 * 24 22 20 27 27 H 1.48503 * 109.47115 * 240.00247 * 24 22 20 28 28 H 1.08990 * 109.47424 * 270.28858 * 1 2 3 29 29 H 1.09007 * 109.46771 * 30.28711 * 1 2 3 30 30 H 1.09001 * 109.47413 * 150.28316 * 1 2 3 31 31 H 1.07998 * 120.03134 * 0.25558 * 6 5 4 32 32 H 1.08000 * 119.96136 * 179.97438 * 7 6 5 33 33 H 1.07998 * 119.93174 * 179.97438 * 8 7 6 34 34 H 1.08007 * 119.96902 * 179.97438 * 9 8 7 35 35 H 1.08004 * 120.03052 * 180.02562 * 10 9 8 36 36 H 1.09001 * 109.46910 * 90.02919 * 12 11 4 37 37 H 1.09002 * 109.46783 * 210.02446 * 12 11 4 38 38 H 1.09000 * 109.47264 * 330.02234 * 12 11 4 39 39 H 1.08997 * 109.46685 * 59.99985 * 19 17 16 40 40 H 1.08999 * 109.46961 * 180.02562 * 19 17 16 41 41 H 1.09003 * 109.47001 * 300.00134 * 19 17 16 42 42 H 0.96998 * 120.00325 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2733 1.0557 0.0000 4 7 3.6112 0.6458 -0.0032 5 6 4.7275 1.4931 -0.0066 6 6 4.6870 2.6944 -0.7019 7 6 5.7885 3.5275 -0.7030 8 6 6.9311 3.1663 -0.0131 9 6 6.9746 1.9706 0.6802 10 6 5.8763 1.1332 0.6851 11 6 3.6451 -0.6989 0.0035 12 6 4.8815 -1.5605 0.0070 13 6 2.3374 -1.1443 0.0056 14 6 1.8919 -2.5480 0.0131 15 8 1.7078 -3.1215 1.0686 16 8 1.6882 -3.1964 -1.1505 17 6 1.2489 -4.5778 -1.0672 18 1 0.6631 -4.7187 -0.1588 19 6 2.4694 -5.5000 -1.0351 20 6 0.4009 -4.9086 -2.2682 21 1 0.2113 -4.1559 -3.0192 22 6 -0.1322 -6.1724 -2.4088 23 7 0.0990 -7.0891 -1.4945 24 14 -1.1840 -6.5822 -3.8971 25 1 -1.2923 -5.3864 -4.7711 26 1 -0.5565 -7.6939 -4.6557 27 1 -2.5388 -6.9921 -3.4481 28 1 -0.3634 0.0052 1.0275 29 1 -0.3633 0.8875 -0.5183 30 1 -0.3634 -0.8925 -0.5094 31 1 3.7934 2.9790 -1.2375 32 1 5.7576 4.4618 -1.2439 33 1 7.7913 3.8192 -0.0158 34 1 7.8687 1.6909 1.2178 35 1 5.9108 0.1997 1.2272 36 1 5.1799 -1.7635 1.0356 37 1 4.6705 -2.5007 -0.5024 38 1 5.6882 -1.0404 -0.5095 39 1 3.0827 -5.2608 -0.1664 40 1 2.1396 -6.5371 -0.9730 41 1 3.0553 -5.3592 -1.9434 42 1 -0.2763 -7.9780 -1.5932 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113693665.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:29 Heat of formation + Delta-G solvation = -6.060123 kcal Electronic energy + Delta-G solvation = -25526.421536 eV Core-core repulsion = 21858.436076 eV Total energy + Delta-G solvation = -3667.985461 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.00887 -41.03509 -39.94229 -37.52842 -35.50508 -35.30585 -33.64224 -31.98443 -31.74625 -31.32828 -29.03000 -28.44079 -27.45563 -25.21241 -23.74992 -23.48736 -22.38923 -20.87785 -20.82798 -19.16828 -18.67427 -18.30430 -17.42937 -17.16460 -16.89475 -16.53604 -16.35126 -15.74844 -15.35668 -14.96262 -14.87536 -14.63808 -14.48313 -14.28686 -14.16670 -13.97494 -13.82404 -13.54330 -13.37201 -13.22594 -13.17145 -12.99291 -12.81581 -12.52710 -12.39870 -12.31124 -12.15414 -11.95668 -11.60954 -11.51232 -11.01994 -10.97445 -10.60200 -10.12083 -10.03741 -9.32285 -8.28455 -6.45103 -0.28084 0.29961 0.75343 1.02412 1.11074 1.14596 1.42763 1.42971 1.57305 2.11610 2.43443 2.68214 3.02045 3.27264 3.32727 3.64573 3.86332 3.90523 4.05008 4.09912 4.20359 4.38621 4.39071 4.40654 4.50160 4.52872 4.56980 4.59496 4.71946 4.78355 4.79373 4.82646 4.88669 4.99058 5.13092 5.18608 5.33342 5.36576 5.47398 5.48516 5.61899 5.69780 5.88085 6.03313 6.04441 6.32420 6.58726 6.91260 7.26288 8.79506 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.022625 B = 0.003024 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.292019 B = 9257.891046 C = 9582.246170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.119 3.881 3 N -0.304 5.304 4 N -0.309 5.309 5 C 0.112 3.888 6 C -0.123 4.123 7 C -0.100 4.100 8 C -0.111 4.111 9 C -0.094 4.094 10 C -0.136 4.136 11 C 0.144 3.856 12 C -0.103 4.103 13 C -0.290 4.290 14 C 0.546 3.454 15 O -0.540 6.540 16 O -0.355 6.355 17 C 0.215 3.785 18 H 0.010 0.990 19 C -0.142 4.142 20 C -0.548 4.548 21 H 0.065 0.935 22 C 0.018 3.982 23 N -0.915 5.915 24 Si 0.982 3.018 25 H -0.265 1.265 26 H -0.270 1.270 27 H -0.274 1.274 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.122 0.878 32 H 0.157 0.843 33 H 0.164 0.836 34 H 0.165 0.835 35 H 0.140 0.860 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.110 0.890 39 H 0.027 0.973 40 H 0.083 0.917 41 H 0.046 0.954 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.055 20.239 2.232 25.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.048 4.048 3 N -0.124 5.124 4 N -0.082 5.082 5 C 0.022 3.978 6 C -0.143 4.143 7 C -0.119 4.119 8 C -0.129 4.129 9 C -0.113 4.113 10 C -0.157 4.157 11 C 0.015 3.985 12 C -0.160 4.160 13 C -0.302 4.302 14 C 0.390 3.610 15 O -0.431 6.431 16 O -0.271 6.271 17 C 0.162 3.838 18 H 0.028 0.972 19 C -0.200 4.200 20 C -0.585 4.585 21 H 0.083 0.917 22 C -0.181 4.181 23 N -0.553 5.553 24 Si 0.805 3.195 25 H -0.189 1.189 26 H -0.195 1.195 27 H -0.200 1.200 28 H 0.114 0.886 29 H 0.123 0.877 30 H 0.088 0.912 31 H 0.140 0.860 32 H 0.175 0.825 33 H 0.181 0.819 34 H 0.183 0.817 35 H 0.158 0.842 36 H 0.130 0.870 37 H 0.099 0.901 38 H 0.128 0.872 39 H 0.046 0.954 40 H 0.102 0.898 41 H 0.065 0.935 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 15.038 21.169 2.552 26.092 hybrid contribution -1.109 -1.679 -0.340 2.040 sum 13.929 19.491 2.212 24.058 Atomic orbital electron populations 1.20408 0.84132 1.04583 1.04596 1.22788 0.98270 0.88007 0.95703 1.77121 0.85745 1.21855 1.27679 1.45545 1.04854 1.03212 1.54597 1.17957 0.84879 0.92679 1.02257 1.21134 1.00621 0.93417 0.99095 1.21419 0.91811 0.99760 0.98863 1.21746 0.98780 0.96820 0.95527 1.21442 0.97910 0.93455 0.98453 1.21396 0.92476 1.02434 0.99350 1.21774 0.96349 0.84547 0.95804 1.20926 0.91531 0.98022 1.05560 1.19226 0.93960 0.90967 1.26040 1.20372 0.72648 0.86012 0.81992 1.90752 1.49270 1.69321 1.33769 1.86658 1.76568 1.30510 1.33335 1.20447 0.93223 0.72692 0.97404 0.97239 1.21988 0.96748 1.02740 0.98494 1.21295 1.32027 0.98200 1.06983 0.91715 1.25800 0.97193 0.95083 1.00067 1.70013 1.44970 1.04693 1.35618 0.85149 0.77881 0.78460 0.78000 1.18936 1.19536 1.19975 0.88566 0.87728 0.91153 0.86019 0.82513 0.81869 0.81735 0.84214 0.87049 0.90090 0.87163 0.95430 0.89844 0.93458 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.35 10.28 71.24 0.73 -1.62 16 2 C 0.12 4.26 7.27 43.54 0.32 4.58 16 3 N -0.30 -10.28 12.25 -46.61 -0.57 -10.85 16 4 N -0.31 -9.43 3.70 -174.47 -0.65 -10.08 16 5 C 0.11 2.65 6.26 38.10 0.24 2.88 16 6 C -0.12 -2.50 9.76 22.39 0.22 -2.29 16 7 C -0.10 -1.29 10.04 22.25 0.22 -1.07 16 8 C -0.11 -1.05 10.04 22.29 0.22 -0.82 16 9 C -0.09 -1.03 10.04 22.25 0.22 -0.80 16 10 C -0.14 -2.36 8.25 22.39 0.18 -2.17 16 11 C 0.14 4.68 6.84 42.12 0.29 4.96 16 12 C -0.10 -2.48 8.41 71.24 0.60 -1.88 16 13 C -0.29 -11.41 6.00 -20.15 -0.12 -11.53 16 14 C 0.55 25.72 7.10 70.20 0.50 26.22 16 15 O -0.54 -28.15 16.37 19.75 0.32 -27.83 16 16 O -0.35 -18.33 9.87 -56.64 -0.56 -18.89 16 17 C 0.22 12.15 2.56 29.85 0.08 12.23 16 18 H 0.01 0.61 7.16 -2.39 -0.02 0.60 16 19 C -0.14 -7.37 9.33 71.98 0.67 -6.69 16 20 C -0.55 -31.70 8.90 25.60 0.23 -31.47 16 21 H 0.06 3.71 7.81 -2.91 -0.02 3.69 16 22 C 0.02 1.02 5.30 84.65 0.45 1.47 16 23 N -0.92 -52.66 11.32 21.45 0.24 -52.42 16 24 Si 0.98 43.25 29.54 68.60 2.03 45.28 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 27 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 28 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.10 2.53 8.14 -2.38 -0.02 2.51 16 30 H 0.07 2.32 8.01 -2.39 -0.02 2.31 16 31 H 0.12 2.70 8.06 -2.91 -0.02 2.68 16 32 H 0.16 1.17 8.06 -2.91 -0.02 1.14 16 33 H 0.16 0.46 8.06 -2.91 -0.02 0.44 16 34 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 35 H 0.14 2.18 6.06 -2.91 -0.02 2.16 16 36 H 0.11 2.21 7.72 -2.39 -0.02 2.19 16 37 H 0.08 2.22 7.97 -2.39 -0.02 2.21 16 38 H 0.11 2.00 6.86 -2.39 -0.02 1.99 16 39 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.08 4.61 6.07 -2.39 -0.01 4.60 16 41 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -74.95 361.49 6.90 -68.05 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 1.03 Total: 14.75 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 5.05 Total: -8.01 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -0.97 Total: -73.35 kcal Atomic # 8 Polarization: -46.48 SS G_CDS: -0.24 Total: -46.72 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -74.95 6.90 -68.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113693665.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.992 kcal (2) G-P(sol) polarization free energy of solvation -74.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds