Wall clock time and date at job start Tue Mar 31 2020 12:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30618 * 125.42144 * 2 1 4 4 C 1.33689 * 108.99477 * 179.75344 * 3 2 1 5 5 C 1.50703 * 126.27070 * 180.27000 * 4 3 2 6 6 C 1.36343 * 107.45138 * 0.42950 * 4 3 2 7 7 C 1.46726 * 126.64090 * 179.84031 * 6 4 3 8 8 O 1.21685 * 119.99785 * 359.70980 * 7 6 4 9 9 N 1.34770 * 119.99839 * 179.71489 * 7 6 4 10 10 C 1.46500 * 120.00240 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.46783 * 34.99218 * 10 9 7 12 12 C 1.53000 * 109.47369 * 154.99867 * 10 9 7 13 13 C 1.50700 * 109.46751 * 294.99698 * 12 10 9 14 14 H 1.08001 * 120.00624 * 0.02562 * 13 12 10 15 15 C 1.37882 * 119.99683 * 180.02562 * 13 12 10 16 16 N 1.31510 * 120.00069 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00106 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47234 * 89.99665 * 17 15 13 19 19 H 1.48494 * 109.47362 * 210.00006 * 17 15 13 20 20 H 1.48504 * 109.47214 * 329.99823 * 17 15 13 21 21 C 1.50703 * 109.47065 * 275.00247 * 10 9 7 22 22 C 1.38235 * 120.00292 * 139.99706 * 21 10 9 23 23 C 1.38230 * 119.99899 * 179.97438 * 22 21 10 24 24 C 1.38235 * 120.00326 * 359.95697 * 23 22 21 25 25 C 1.38234 * 119.99814 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99503 * 319.96999 * 21 10 9 27 27 O 1.33663 * 125.42368 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47087 * 269.97526 * 1 2 3 29 29 H 1.09000 * 109.47541 * 29.97233 * 1 2 3 30 30 H 1.09000 * 109.47052 * 149.97878 * 1 2 3 31 31 H 1.08997 * 109.46935 * 270.18687 * 5 4 3 32 32 H 1.08997 * 109.47557 * 30.18993 * 5 4 3 33 33 H 1.09006 * 109.47022 * 150.19197 * 5 4 3 34 34 H 0.96997 * 120.00034 * 359.97438 * 9 7 6 35 35 H 1.08995 * 109.46916 * 54.99829 * 12 10 9 36 36 H 1.09003 * 109.46852 * 175.00197 * 12 10 9 37 37 H 0.97001 * 120.00291 * 179.97438 * 16 15 13 38 38 H 1.08001 * 119.99730 * 359.97438 * 22 21 10 39 39 H 1.08000 * 120.00376 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.00616 * 179.72578 * 24 23 22 41 41 H 1.08001 * 120.00299 * 179.97438 * 25 24 23 42 42 H 1.07997 * 120.00455 * 0.02562 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0644 0.0000 4 6 3.5463 0.6864 0.0054 5 6 4.7451 1.5997 0.0131 6 6 3.5708 -0.6768 -0.0008 7 6 4.7636 -1.5313 -0.0014 8 8 5.8718 -1.0288 -0.0013 9 7 4.6317 -2.8725 -0.0022 10 6 5.8226 -3.7257 -0.0022 11 1 6.6080 -3.2532 0.5877 12 6 5.4756 -5.0858 0.6065 13 6 5.1124 -4.9084 2.0583 14 1 5.1271 -3.9239 2.5023 15 6 4.7613 -6.0029 2.8198 16 7 4.4438 -5.8480 4.0866 17 14 4.7365 -7.7056 2.0522 18 1 6.0712 -8.3379 2.2069 19 1 3.7121 -8.5396 2.7305 20 1 4.4065 -7.5931 0.6086 21 6 6.3036 -3.9167 -1.4176 22 6 7.6579 -3.9066 -1.6947 23 6 8.0990 -4.0824 -2.9928 24 6 7.1861 -4.2692 -4.0138 25 6 5.8319 -4.2808 -3.7365 26 6 5.3905 -4.1027 -2.4386 27 8 2.2817 -1.0892 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 5.0370 1.8246 -1.0127 32 1 4.4933 2.5254 0.5305 33 1 5.5720 1.1095 0.5270 34 1 3.7482 -3.2729 -0.0020 35 1 4.6308 -5.5187 0.0709 36 1 6.3361 -5.7501 0.5259 37 1 4.1964 -6.6179 4.6223 38 1 8.3712 -3.7613 -0.8969 39 1 9.1571 -4.0740 -3.2095 40 1 7.5305 -4.4021 -5.0288 41 1 5.1185 -4.4263 -4.5342 42 1 4.3325 -4.1107 -2.2222 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153742810.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:18 Heat of formation + Delta-G solvation = 1.238614 kcal Electronic energy + Delta-G solvation = -25856.241889 eV Core-core repulsion = 22188.572926 eV Total energy + Delta-G solvation = -3667.668964 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.35709 -39.73232 -38.48045 -35.66870 -35.04783 -32.82866 -32.67167 -31.33308 -30.60512 -29.40512 -29.34508 -27.34423 -25.02304 -22.51066 -22.14526 -21.82710 -21.71034 -20.42716 -19.89664 -17.91571 -17.18223 -16.94183 -16.45745 -15.76506 -15.66801 -15.02853 -14.48421 -14.37026 -14.24176 -14.16119 -13.57748 -13.34480 -13.14612 -13.12624 -12.96131 -12.92093 -12.75418 -12.67835 -12.44654 -12.09413 -11.85585 -11.40910 -11.16705 -10.93967 -10.79965 -10.78485 -10.69518 -10.25014 -9.90600 -9.80752 -9.38965 -8.87125 -8.68121 -8.64813 -8.52526 -8.36717 -6.14985 -4.15476 0.94457 1.61705 1.65971 2.44464 2.48998 3.22545 3.31081 3.32881 3.37081 3.51730 3.90334 4.09740 4.34269 4.76331 4.86989 5.11667 5.13283 5.14570 5.17182 5.18749 5.21885 5.35516 5.39896 5.59878 5.64771 5.73289 5.75896 5.77505 5.92928 5.96459 6.01486 6.16148 6.24794 6.34952 6.37690 6.62012 6.69776 6.71853 6.86949 6.96919 7.21187 7.25531 7.57280 7.59715 7.89701 8.38524 8.43428 8.89978 9.45239 10.97710 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.008720 B = 0.005430 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3210.081302 B = 5155.527916 C = 7152.878642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.211 3.789 3 N -0.492 5.492 4 C 0.071 3.929 5 C -0.078 4.078 6 C -0.105 4.105 7 C 0.607 3.393 8 O -0.521 6.521 9 N -0.686 5.686 10 C 0.195 3.805 11 H 0.097 0.903 12 C -0.014 4.014 13 C -0.524 4.524 14 H 0.076 0.924 15 C 0.072 3.928 16 N -0.896 5.896 17 Si 0.875 3.125 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.265 1.265 21 C -0.079 4.079 22 C -0.105 4.105 23 C -0.122 4.122 24 C -0.132 4.132 25 C -0.124 4.124 26 C -0.109 4.109 27 O -0.185 6.185 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.406 0.594 35 H 0.024 0.976 36 H 0.033 0.967 37 H 0.264 0.736 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.463 8.161 -13.431 16.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.006 3.994 3 N -0.223 5.223 4 C -0.053 4.053 5 C -0.135 4.135 6 C -0.160 4.160 7 C 0.391 3.609 8 O -0.400 6.400 9 N -0.333 5.333 10 C 0.091 3.909 11 H 0.115 0.885 12 C -0.051 4.051 13 C -0.562 4.562 14 H 0.094 0.906 15 C -0.130 4.130 16 N -0.534 5.534 17 Si 0.702 3.298 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.190 1.190 21 C -0.080 4.080 22 C -0.124 4.124 23 C -0.140 4.140 24 C -0.150 4.150 25 C -0.142 4.142 26 C -0.127 4.127 27 O -0.071 6.071 28 H 0.116 0.884 29 H 0.120 0.880 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.241 0.759 35 H 0.042 0.958 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.141 0.859 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.992 8.920 -13.248 16.249 hybrid contribution -0.367 -1.934 -0.202 1.979 sum -3.360 6.986 -13.450 15.524 Atomic orbital electron populations 1.20342 0.80983 1.05265 1.05114 1.26469 0.96634 0.78783 0.97546 1.70296 1.01692 1.30025 1.20261 1.21995 0.93334 0.91341 0.98587 1.20353 0.92425 0.97291 1.03416 1.23102 0.82389 0.95236 1.15246 1.16302 0.85208 0.82019 0.77330 1.90815 1.23567 1.73923 1.51653 1.45826 1.11021 1.04576 1.71926 1.20068 0.87139 0.93203 0.90529 0.88526 1.19883 0.97412 0.90571 0.97267 1.21001 1.46587 0.96134 0.92430 0.90636 1.24982 0.94485 0.98935 0.94631 1.69902 1.45937 1.30863 1.06729 0.86852 0.78234 0.84697 0.79971 1.20115 1.21294 1.18969 1.20523 0.93663 0.97566 0.96294 1.21038 0.95189 0.99450 0.96707 1.21068 0.99278 1.00641 0.93001 1.21034 0.93412 1.01727 0.98794 1.21056 0.95705 1.01029 0.96460 1.20940 0.99457 0.99802 0.92544 1.84467 1.16289 1.37135 1.69220 0.88438 0.87981 0.88985 0.90321 0.90753 0.88510 0.75876 0.95761 0.94922 0.92575 0.85854 0.86387 0.86679 0.86623 0.86572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.51 36.00 0.38 -0.09 16 2 C 0.21 2.85 8.32 -12.80 -0.11 2.74 16 3 N -0.49 -7.52 11.26 -7.07 -0.08 -7.60 16 4 C 0.07 1.16 7.16 -82.46 -0.59 0.57 16 5 C -0.08 -1.07 9.87 36.01 0.36 -0.72 16 6 C -0.10 -1.81 7.18 -36.84 -0.26 -2.07 16 7 C 0.61 11.42 7.75 -12.83 -0.10 11.32 16 8 O -0.52 -10.60 14.46 5.20 0.08 -10.52 16 9 N -0.69 -12.74 4.03 -56.23 -0.23 -12.97 16 10 C 0.19 3.80 2.11 -69.08 -0.15 3.65 16 11 H 0.10 2.04 7.44 -51.93 -0.39 1.66 16 12 C -0.01 -0.30 3.56 -27.88 -0.10 -0.40 16 13 C -0.52 -13.98 9.39 -34.44 -0.32 -14.31 16 14 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 15 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 16 N -0.90 -26.66 13.96 55.43 0.77 -25.89 16 17 Si 0.88 20.72 27.47 -169.99 -4.67 16.05 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 21 C -0.08 -1.38 4.91 -104.62 -0.51 -1.89 16 22 C -0.11 -1.69 9.67 -39.59 -0.38 -2.07 16 23 C -0.12 -1.68 10.05 -39.59 -0.40 -2.08 16 24 C -0.13 -1.73 10.05 -39.58 -0.40 -2.12 16 25 C -0.12 -1.73 10.05 -39.58 -0.40 -2.12 16 26 C -0.11 -1.74 9.32 -39.58 -0.37 -2.10 16 27 O -0.18 -2.90 10.57 4.44 0.05 -2.86 16 28 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.10 1.45 6.47 -51.93 -0.34 1.11 16 34 H 0.41 7.19 8.40 -40.82 -0.34 6.84 16 35 H 0.02 0.53 7.20 -51.93 -0.37 0.15 16 36 H 0.03 0.73 7.57 -51.93 -0.39 0.33 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.12 1.86 8.04 -52.49 -0.42 1.44 16 39 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 41 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.12 1.75 7.72 -52.49 -0.41 1.34 16 LS Contribution 361.87 15.07 5.45 5.45 Total: -1.00 -32.59 361.87 -7.71 -40.30 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.63 Total: 7.84 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -3.45 Total: -9.80 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 0.47 Total: -46.46 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.12 Total: -13.38 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.67 Total: 16.05 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.59 -7.71 -40.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153742810.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.536 kcal (2) G-P(sol) polarization free energy of solvation -32.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds