Wall clock time and date at job start Tue Mar 31 2020 12:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30618 * 125.42144 * 2 1 4 4 C 1.33689 * 108.99477 * 179.75344 * 3 2 1 5 5 C 1.50703 * 126.27070 * 180.27000 * 4 3 2 6 6 C 1.36343 * 107.45138 * 0.42950 * 4 3 2 7 7 C 1.46726 * 126.64090 * 179.84031 * 6 4 3 8 8 O 1.21685 * 119.99785 * 359.70980 * 7 6 4 9 9 N 1.34770 * 119.99839 * 179.71489 * 7 6 4 10 10 C 1.46500 * 120.00240 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.46783 * 34.99218 * 10 9 7 12 12 C 1.53000 * 109.47369 * 154.99867 * 10 9 7 13 13 C 1.50700 * 109.46751 * 294.99698 * 12 10 9 14 14 H 1.08001 * 120.00624 * 0.02562 * 13 12 10 15 15 C 1.37882 * 119.99683 * 180.02562 * 13 12 10 16 16 N 1.31510 * 120.00069 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00106 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47234 * 89.99665 * 17 15 13 19 19 H 1.48494 * 109.47362 * 210.00006 * 17 15 13 20 20 H 1.48504 * 109.47214 * 329.99823 * 17 15 13 21 21 C 1.50703 * 109.47065 * 275.00247 * 10 9 7 22 22 C 1.38235 * 120.00292 * 139.99706 * 21 10 9 23 23 C 1.38230 * 119.99899 * 179.97438 * 22 21 10 24 24 C 1.38235 * 120.00326 * 359.95697 * 23 22 21 25 25 C 1.38234 * 119.99814 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99503 * 319.96999 * 21 10 9 27 27 O 1.33663 * 125.42368 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47087 * 269.97526 * 1 2 3 29 29 H 1.09000 * 109.47541 * 29.97233 * 1 2 3 30 30 H 1.09000 * 109.47052 * 149.97878 * 1 2 3 31 31 H 1.08997 * 109.46935 * 270.18687 * 5 4 3 32 32 H 1.08997 * 109.47557 * 30.18993 * 5 4 3 33 33 H 1.09006 * 109.47022 * 150.19197 * 5 4 3 34 34 H 0.96997 * 120.00034 * 359.97438 * 9 7 6 35 35 H 1.08995 * 109.46916 * 54.99829 * 12 10 9 36 36 H 1.09003 * 109.46852 * 175.00197 * 12 10 9 37 37 H 0.97001 * 120.00291 * 179.97438 * 16 15 13 38 38 H 1.08001 * 119.99730 * 359.97438 * 22 21 10 39 39 H 1.08000 * 120.00376 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.00616 * 179.72578 * 24 23 22 41 41 H 1.08001 * 120.00299 * 179.97438 * 25 24 23 42 42 H 1.07997 * 120.00455 * 0.02562 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0644 0.0000 4 6 3.5463 0.6864 0.0054 5 6 4.7451 1.5997 0.0131 6 6 3.5708 -0.6768 -0.0008 7 6 4.7636 -1.5313 -0.0014 8 8 5.8718 -1.0288 -0.0013 9 7 4.6317 -2.8725 -0.0022 10 6 5.8226 -3.7257 -0.0022 11 1 6.6080 -3.2532 0.5877 12 6 5.4756 -5.0858 0.6065 13 6 5.1124 -4.9084 2.0583 14 1 5.1271 -3.9239 2.5023 15 6 4.7613 -6.0029 2.8198 16 7 4.4438 -5.8480 4.0866 17 14 4.7365 -7.7056 2.0522 18 1 6.0712 -8.3379 2.2069 19 1 3.7121 -8.5396 2.7305 20 1 4.4065 -7.5931 0.6086 21 6 6.3036 -3.9167 -1.4176 22 6 7.6579 -3.9066 -1.6947 23 6 8.0990 -4.0824 -2.9928 24 6 7.1861 -4.2692 -4.0138 25 6 5.8319 -4.2808 -3.7365 26 6 5.3905 -4.1027 -2.4386 27 8 2.2817 -1.0892 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 5.0370 1.8246 -1.0127 32 1 4.4933 2.5254 0.5305 33 1 5.5720 1.1095 0.5270 34 1 3.7482 -3.2729 -0.0020 35 1 4.6308 -5.5187 0.0709 36 1 6.3361 -5.7501 0.5259 37 1 4.1964 -6.6179 4.6223 38 1 8.3712 -3.7613 -0.8969 39 1 9.1571 -4.0740 -3.2095 40 1 7.5305 -4.4021 -5.0288 41 1 5.1185 -4.4263 -4.5342 42 1 4.3325 -4.1107 -2.2222 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153742810.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:16 Heat of formation + Delta-G solvation = -21.001762 kcal Electronic energy + Delta-G solvation = -25857.206304 eV Core-core repulsion = 22188.572926 eV Total energy + Delta-G solvation = -3668.633379 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.54483 -41.12484 -39.75054 -37.10257 -36.34804 -34.74002 -33.84945 -32.73103 -31.72990 -31.01803 -30.30243 -28.63579 -26.63509 -23.69833 -23.58400 -23.19985 -22.86628 -21.75875 -21.32443 -19.32566 -19.06830 -18.17130 -17.78869 -17.19042 -16.84485 -16.38055 -16.21707 -15.69183 -15.54378 -15.27609 -15.05265 -14.66254 -14.38478 -14.27716 -14.18749 -14.11557 -13.88209 -13.83173 -13.60307 -13.48030 -13.17503 -13.07020 -12.58404 -12.45069 -12.07184 -12.03636 -11.96324 -11.79596 -11.76412 -11.47808 -11.25532 -10.80070 -10.30449 -9.83982 -9.77860 -9.58174 -8.30512 -6.36063 -0.30498 0.45774 0.53445 1.26752 1.31685 1.36446 1.37049 1.48214 1.95171 2.16273 2.33682 2.86210 2.93687 3.05101 3.59842 3.65094 3.86604 3.99012 4.18216 4.23727 4.29064 4.30930 4.37623 4.52535 4.59467 4.61047 4.64394 4.69565 4.73076 4.74263 4.84676 4.93723 5.07309 5.10896 5.15361 5.18930 5.29155 5.41865 5.52616 5.62230 5.62699 5.79181 6.15026 6.21030 6.29777 6.52504 6.70795 6.96851 7.28090 8.85895 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.008720 B = 0.005430 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3210.081302 B = 5155.527916 C = 7152.878642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.226 3.774 3 N -0.512 5.512 4 C 0.075 3.925 5 C -0.076 4.076 6 C -0.140 4.140 7 C 0.605 3.395 8 O -0.546 6.546 9 N -0.685 5.685 10 C 0.205 3.795 11 H 0.067 0.933 12 C -0.004 4.004 13 C -0.523 4.523 14 H 0.030 0.970 15 C 0.012 3.988 16 N -0.947 5.947 17 Si 0.946 3.054 18 H -0.269 1.269 19 H -0.285 1.285 20 H -0.243 1.243 21 C -0.102 4.102 22 C -0.126 4.126 23 C -0.121 4.121 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.123 4.123 27 O -0.195 6.195 28 H 0.115 0.885 29 H 0.124 0.876 30 H 0.113 0.887 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.408 0.592 35 H 0.035 0.965 36 H 0.036 0.964 37 H 0.266 0.734 38 H 0.119 0.881 39 H 0.146 0.854 40 H 0.151 0.849 41 H 0.145 0.855 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.403 7.512 -16.620 18.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.021 3.979 3 N -0.242 5.242 4 C -0.049 4.049 5 C -0.133 4.133 6 C -0.195 4.195 7 C 0.391 3.609 8 O -0.427 6.427 9 N -0.333 5.333 10 C 0.100 3.900 11 H 0.085 0.915 12 C -0.042 4.042 13 C -0.561 4.561 14 H 0.048 0.952 15 C -0.186 4.186 16 N -0.587 5.587 17 Si 0.769 3.231 18 H -0.195 1.195 19 H -0.211 1.211 20 H -0.166 1.166 21 C -0.103 4.103 22 C -0.144 4.144 23 C -0.139 4.139 24 C -0.143 4.143 25 C -0.142 4.142 26 C -0.141 4.141 27 O -0.082 6.082 28 H 0.133 0.867 29 H 0.142 0.858 30 H 0.131 0.869 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.244 0.756 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.137 0.863 39 H 0.164 0.836 40 H 0.169 0.831 41 H 0.163 0.837 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.935 8.285 -16.457 18.840 hybrid contribution -0.141 -1.588 0.797 1.783 sum -4.075 6.697 -15.660 17.513 Atomic orbital electron populations 1.20762 0.76845 1.07384 1.06773 1.27791 0.98453 0.77770 0.93845 1.70373 1.01285 1.30651 1.21928 1.22405 0.94464 0.91256 0.96757 1.20393 0.91149 0.97423 1.04315 1.22762 0.82640 0.95374 1.18731 1.16482 0.85670 0.82014 0.76718 1.90779 1.24712 1.74303 1.52889 1.45768 1.10814 1.04692 1.72021 1.19717 0.86655 0.91505 0.92096 0.91491 1.19740 0.97655 0.92418 0.94401 1.21189 1.45908 0.94193 0.94823 0.95208 1.25912 0.94103 1.03596 0.94957 1.70063 1.47777 1.32280 1.08598 0.85726 0.78427 0.78834 0.80081 1.19456 1.21051 1.16613 1.20317 0.94722 1.00253 0.95020 1.21191 0.94671 1.00433 0.98113 1.21409 1.01086 0.99405 0.91983 1.21494 0.92914 0.99596 1.00254 1.21420 0.96910 0.99772 0.96098 1.21069 0.99330 1.00385 0.93299 1.84461 1.15883 1.38076 1.69809 0.86705 0.85795 0.86851 0.88892 0.88847 0.90192 0.75609 0.94644 0.94558 0.92468 0.86305 0.83615 0.83096 0.83731 0.86455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.78 10.51 71.24 0.75 -0.03 16 2 C 0.23 5.84 8.32 88.29 0.73 6.58 16 3 N -0.51 -15.25 11.26 -291.06 -3.28 -18.52 16 4 C 0.08 2.46 7.16 41.83 0.30 2.76 16 5 C -0.08 -2.11 9.87 71.24 0.70 -1.41 16 6 C -0.14 -5.02 7.18 24.05 0.17 -4.84 16 7 C 0.60 24.10 7.75 86.46 0.67 24.77 16 8 O -0.55 -23.65 14.46 -4.30 -0.06 -23.72 16 9 N -0.69 -26.86 4.03 -450.03 -1.81 -28.67 16 10 C 0.20 8.38 2.11 44.25 0.09 8.48 16 11 H 0.07 3.08 7.44 -2.39 -0.02 3.07 16 12 C 0.00 -0.20 3.56 29.85 0.11 -0.10 16 13 C -0.52 -29.18 9.39 25.60 0.24 -28.94 16 14 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 15 C 0.01 0.67 5.47 84.66 0.46 1.13 16 16 N -0.95 -58.40 13.96 21.45 0.30 -58.10 16 17 Si 0.95 42.78 27.47 68.60 1.88 44.66 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.24 -10.03 6.54 99.48 0.65 -9.38 16 21 C -0.10 -3.58 4.91 -19.87 -0.10 -3.68 16 22 C -0.13 -4.00 9.67 22.27 0.22 -3.78 16 23 C -0.12 -3.05 10.05 22.27 0.22 -2.82 16 24 C -0.12 -2.81 10.05 22.27 0.22 -2.59 16 25 C -0.12 -3.07 10.05 22.27 0.22 -2.84 16 26 C -0.12 -3.76 9.32 22.27 0.21 -3.56 16 27 O -0.19 -6.16 10.57 -7.04 -0.07 -6.24 16 28 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.08 2.52 6.47 -2.38 -0.02 2.50 16 34 H 0.41 15.18 8.40 -92.71 -0.78 14.40 16 35 H 0.04 1.52 7.20 -2.39 -0.02 1.51 16 36 H 0.04 1.62 7.57 -2.39 -0.02 1.60 16 37 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 38 H 0.12 3.73 8.04 -2.91 -0.02 3.71 16 39 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 40 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 41 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 42 H 0.12 3.45 7.72 -2.91 -0.02 3.43 16 Total: -1.00 -74.29 361.87 2.40 -71.89 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: 0.21 Total: 29.57 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 5.23 Total: -10.88 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -4.79 Total: -105.30 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.14 Total: -29.95 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.88 Total: 44.66 kcal Total: -74.29 2.40 -71.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153742810.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.890 kcal (2) G-P(sol) polarization free energy of solvation -74.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds