Wall clock time and date at job start Tue Mar 31 2020 11:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30011 * 127.33565 * 2 1 4 4 O 1.20663 * 112.30031 * 179.97438 * 3 2 1 5 5 C 1.33491 * 113.15921 * 0.02562 * 4 3 2 6 6 C 1.50691 * 126.83001 * 179.97438 * 5 4 3 7 7 C 1.37360 * 106.34136 * 359.97438 * 5 4 3 8 8 C 1.47398 * 128.56709 * 180.02562 * 7 5 4 9 9 O 1.21604 * 120.00699 * 89.99552 * 8 7 5 10 10 N 1.34776 * 119.99556 * 269.99391 * 8 7 5 11 11 C 1.46498 * 119.99992 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.47162 * 35.00729 * 11 10 8 13 13 C 1.53000 * 109.47119 * 154.99936 * 11 10 8 14 14 C 1.50694 * 109.47627 * 295.00546 * 13 11 10 15 15 H 1.08005 * 119.99948 * 359.97438 * 14 13 11 16 16 C 1.37881 * 120.00233 * 179.97438 * 14 13 11 17 17 N 1.31520 * 119.99738 * 179.97438 * 16 14 13 18 18 Si 1.86791 * 119.99969 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.47137 * 90.00067 * 18 16 14 20 20 H 1.48505 * 109.47345 * 209.99750 * 18 16 14 21 21 H 1.48502 * 109.47293 * 330.00097 * 18 16 14 22 22 C 1.50699 * 109.47738 * 275.00190 * 11 10 8 23 23 C 1.38228 * 119.99744 * 319.73242 * 22 11 10 24 24 C 1.38242 * 120.00014 * 179.78750 * 23 22 11 25 25 C 1.38238 * 119.99399 * 0.43113 * 24 23 22 26 26 C 1.38230 * 120.00187 * 359.82070 * 25 24 23 27 27 C 1.38234 * 119.99899 * 139.99246 * 22 11 10 28 28 H 1.09005 * 109.46508 * 90.02826 * 1 2 3 29 29 H 1.09000 * 109.46963 * 210.01991 * 1 2 3 30 30 H 1.08996 * 109.47294 * 330.02939 * 1 2 3 31 31 H 1.09001 * 109.47692 * 0.02643 * 6 5 4 32 32 H 1.09008 * 109.47345 * 120.02202 * 6 5 4 33 33 H 1.09001 * 109.47450 * 240.02112 * 6 5 4 34 34 H 0.97002 * 120.00286 * 359.97438 * 10 8 7 35 35 H 1.09003 * 109.47172 * 55.00790 * 13 11 10 36 36 H 1.09008 * 109.47085 * 175.00085 * 13 11 10 37 37 H 0.96995 * 119.99549 * 180.02562 * 17 16 14 38 38 H 1.08004 * 120.00202 * 359.97438 * 23 22 11 39 39 H 1.07999 * 119.99866 * 180.27329 * 24 23 22 40 40 H 1.08009 * 119.99546 * 179.83669 * 25 24 23 41 41 H 1.08004 * 119.99750 * 180.02562 * 26 25 24 42 42 H 1.08000 * 120.00323 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 0.0005 5 6 3.6495 -0.6008 0.0004 6 6 4.9712 -1.3246 0.0003 7 6 2.3992 -1.1697 0.0003 8 6 2.0401 -2.5992 0.0007 9 8 1.8918 -3.1887 1.0538 10 7 1.8760 -3.2531 -1.1664 11 6 1.5196 -4.6740 -1.1662 12 1 0.8595 -4.8829 -0.3244 13 6 0.8041 -5.0206 -2.4734 14 6 -0.5070 -4.2807 -2.5400 15 1 -0.8008 -3.6287 -1.7306 16 6 -1.3315 -4.4360 -3.6342 17 7 -2.4760 -3.7906 -3.6919 18 14 -0.8230 -5.5630 -5.0343 19 1 -1.3258 -6.9356 -4.7725 20 1 -1.3973 -5.0601 -6.3081 21 1 0.6584 -5.5894 -5.1355 22 6 2.7702 -5.5057 -1.0423 23 6 3.9129 -5.1421 -1.7299 24 6 5.0615 -5.9026 -1.6128 25 6 5.0645 -7.0315 -0.8151 26 6 3.9202 -7.3979 -0.1316 27 6 2.7730 -6.6351 -0.2453 28 1 -0.3632 -0.0005 -1.0277 29 1 -0.3633 -0.8898 0.5141 30 1 -0.3634 0.8902 0.5133 31 1 5.7835 -0.5978 0.0009 32 1 5.0429 -1.9503 0.8901 33 1 5.0433 -1.9495 -0.8899 34 1 1.9939 -2.7828 -2.0066 35 1 1.4289 -4.7295 -3.3178 36 1 0.6180 -6.0940 -2.5122 37 1 -3.0561 -3.9002 -4.4615 38 1 3.9094 -4.2623 -2.3563 39 1 5.9555 -5.6160 -2.1466 40 1 5.9611 -7.6271 -0.7257 41 1 3.9228 -8.2798 0.4920 42 1 1.8791 -6.9213 0.2890 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156968432.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:34 Heat of formation + Delta-G solvation = 37.921383 kcal Electronic energy + Delta-G solvation = -26166.735961 eV Core-core repulsion = 22500.657682 eV Total energy + Delta-G solvation = -3666.078279 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -44.75487 -39.75165 -38.48934 -35.38900 -34.40363 -33.54997 -32.69514 -31.25871 -30.62917 -29.39394 -28.60413 -27.98986 -25.47536 -23.89745 -22.40561 -21.84313 -20.81032 -19.99820 -19.70852 -17.78317 -17.64626 -17.13700 -16.47066 -16.15206 -15.68936 -15.04936 -14.54850 -14.41447 -14.30439 -13.73679 -13.50546 -13.47421 -13.17703 -13.06417 -13.05500 -12.90442 -12.67788 -12.61424 -12.45690 -12.33229 -11.90481 -11.42179 -11.18281 -11.00273 -10.80567 -10.72287 -10.25509 -9.91628 -9.88530 -9.68923 -9.39859 -9.27843 -8.71849 -8.66686 -8.62782 -8.39071 -6.16516 -4.16610 1.38060 1.59696 1.62969 2.05156 2.73243 2.95629 3.21664 3.30363 3.31816 3.62193 4.05650 4.28644 4.33189 4.35084 4.96913 5.00809 5.10658 5.10958 5.17721 5.20175 5.25826 5.29960 5.36135 5.46127 5.66458 5.70919 5.73149 5.75627 5.80483 5.87912 5.96850 6.14946 6.22777 6.26100 6.34132 6.63711 6.67849 6.69768 6.85209 6.96890 7.21495 7.24052 7.58665 7.91922 8.31870 8.37543 8.54456 8.88406 9.44212 10.96057 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.008682 B = 0.006183 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3224.195854 B = 4527.563683 C = 6907.800700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.063 3.937 3 N -0.362 5.362 4 O 0.091 5.909 5 C 0.008 3.992 6 C -0.076 4.076 7 C -0.242 4.242 8 C 0.599 3.401 9 O -0.534 6.534 10 N -0.687 5.687 11 C 0.194 3.806 12 H 0.094 0.906 13 C -0.014 4.014 14 C -0.523 4.523 15 H 0.076 0.924 16 C 0.072 3.928 17 N -0.896 5.896 18 Si 0.874 3.126 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.265 1.265 22 C -0.078 4.078 23 C -0.110 4.110 24 C -0.124 4.124 25 C -0.132 4.132 26 C -0.121 4.121 27 C -0.106 4.106 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.403 0.597 35 H 0.024 0.976 36 H 0.031 0.969 37 H 0.264 0.736 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.408 0.974 4.749 16.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.099 4.099 3 N -0.070 5.070 4 O 0.031 5.969 5 C -0.055 4.055 6 C -0.133 4.133 7 C -0.249 4.249 8 C 0.382 3.618 9 O -0.411 6.411 10 N -0.335 5.335 11 C 0.090 3.910 12 H 0.112 0.888 13 C -0.051 4.051 14 C -0.561 4.561 15 H 0.095 0.905 16 C -0.130 4.130 17 N -0.534 5.534 18 Si 0.701 3.299 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.190 1.190 22 C -0.079 4.079 23 C -0.129 4.129 24 C -0.142 4.142 25 C -0.150 4.150 26 C -0.139 4.139 27 C -0.125 4.125 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.238 0.762 35 H 0.042 0.958 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 14.935 1.886 5.375 15.984 hybrid contribution 0.004 -1.141 -1.280 1.715 sum 14.939 0.744 4.095 15.508 Atomic orbital electron populations 1.20272 0.84817 1.04089 1.04567 1.24828 0.98753 0.86380 0.99932 1.73582 0.89105 1.23393 1.20948 1.84502 1.21628 1.22548 1.68270 1.24535 0.97319 0.83826 0.99846 1.20425 0.88956 0.99181 1.04781 1.22049 0.92717 0.95745 1.14414 1.16821 0.77029 0.83526 0.84419 1.90788 1.50963 1.67913 1.31394 1.45872 1.68617 1.11232 1.07804 1.20030 0.91177 0.77446 1.02337 0.88765 1.19881 0.96459 0.97808 0.90986 1.20993 1.01214 1.27702 1.06143 0.90544 1.24972 0.94656 0.95344 0.98020 1.69897 1.10752 1.42271 1.30474 0.86874 0.79420 0.81459 0.82115 1.20165 1.21328 1.18988 1.20545 0.96010 0.95852 0.95502 1.20925 0.92723 0.99855 0.99360 1.21053 0.97947 0.95775 0.99468 1.21032 0.98082 0.97509 0.98398 1.21073 0.93265 0.99695 0.99908 1.21051 0.98307 0.94882 0.98229 0.88920 0.89450 0.90286 0.89462 0.88754 0.88791 0.76183 0.95800 0.95080 0.92590 0.86530 0.86591 0.86710 0.86448 0.85949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 10.49 36.01 0.38 -0.79 16 2 C 0.06 1.01 7.59 -79.76 -0.61 0.40 16 3 N -0.36 -5.71 12.01 34.78 0.42 -5.30 16 4 O 0.09 1.29 11.06 18.66 0.21 1.50 16 5 C 0.01 0.11 7.55 -34.63 -0.26 -0.15 16 6 C -0.08 -0.69 10.33 36.00 0.37 -0.32 16 7 C -0.24 -3.85 6.24 -102.89 -0.64 -4.49 16 8 C 0.60 10.67 7.59 -12.53 -0.10 10.58 16 9 O -0.53 -11.18 16.77 5.27 0.09 -11.09 16 10 N -0.69 -11.89 4.04 -56.02 -0.23 -12.11 16 11 C 0.19 3.64 2.11 -69.08 -0.15 3.49 16 12 H 0.09 1.96 7.44 -51.93 -0.39 1.58 16 13 C -0.01 -0.29 3.56 -27.89 -0.10 -0.39 16 14 C -0.52 -13.51 9.39 -34.44 -0.32 -13.83 16 15 H 0.08 2.16 7.99 -52.48 -0.42 1.74 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -26.03 13.96 55.43 0.77 -25.26 16 18 Si 0.87 20.38 27.47 -169.99 -4.67 15.71 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.27 -5.89 6.54 56.52 0.37 -5.52 16 22 C -0.08 -1.29 4.91 -104.63 -0.51 -1.80 16 23 C -0.11 -1.60 9.32 -39.58 -0.37 -1.97 16 24 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 25 C -0.13 -1.62 10.05 -39.58 -0.40 -2.01 16 26 C -0.12 -1.60 10.05 -39.59 -0.40 -2.00 16 27 C -0.11 -1.64 9.67 -39.58 -0.38 -2.03 16 28 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 29 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.40 6.53 8.59 -40.82 -0.35 6.18 16 35 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 36 H 0.03 0.68 7.57 -51.92 -0.39 0.28 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.12 1.55 7.73 -52.48 -0.41 1.14 16 39 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.11 1.10 8.06 -52.48 -0.42 0.68 16 41 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 42 H 0.12 1.82 8.04 -52.49 -0.42 1.40 16 LS Contribution 366.31 15.07 5.52 5.52 Total: -1.00 -31.72 366.31 -7.59 -39.31 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.72 Total: 7.13 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -3.98 Total: -15.40 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 0.97 Total: -42.67 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.29 Total: -9.60 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.67 Total: 15.71 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.72 -7.59 -39.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156968432.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.230 kcal (2) G-P(sol) polarization free energy of solvation -31.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds