Wall clock time and date at job start Tue Mar 31 2020 11:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30011 * 127.33565 * 2 1 4 4 O 1.20663 * 112.30031 * 179.97438 * 3 2 1 5 5 C 1.33491 * 113.15921 * 0.02562 * 4 3 2 6 6 C 1.50691 * 126.83001 * 179.97438 * 5 4 3 7 7 C 1.37360 * 106.34136 * 359.97438 * 5 4 3 8 8 C 1.47398 * 128.56709 * 180.02562 * 7 5 4 9 9 O 1.21604 * 120.00699 * 89.99552 * 8 7 5 10 10 N 1.34776 * 119.99556 * 269.99391 * 8 7 5 11 11 C 1.46498 * 119.99992 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.47162 * 35.00729 * 11 10 8 13 13 C 1.53000 * 109.47119 * 154.99936 * 11 10 8 14 14 C 1.50694 * 109.47627 * 295.00546 * 13 11 10 15 15 H 1.08005 * 119.99948 * 359.97438 * 14 13 11 16 16 C 1.37881 * 120.00233 * 179.97438 * 14 13 11 17 17 N 1.31520 * 119.99738 * 179.97438 * 16 14 13 18 18 Si 1.86791 * 119.99969 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.47137 * 90.00067 * 18 16 14 20 20 H 1.48505 * 109.47345 * 209.99750 * 18 16 14 21 21 H 1.48502 * 109.47293 * 330.00097 * 18 16 14 22 22 C 1.50699 * 109.47738 * 275.00190 * 11 10 8 23 23 C 1.38228 * 119.99744 * 319.73242 * 22 11 10 24 24 C 1.38242 * 120.00014 * 179.78750 * 23 22 11 25 25 C 1.38238 * 119.99399 * 0.43113 * 24 23 22 26 26 C 1.38230 * 120.00187 * 359.82070 * 25 24 23 27 27 C 1.38234 * 119.99899 * 139.99246 * 22 11 10 28 28 H 1.09005 * 109.46508 * 90.02826 * 1 2 3 29 29 H 1.09000 * 109.46963 * 210.01991 * 1 2 3 30 30 H 1.08996 * 109.47294 * 330.02939 * 1 2 3 31 31 H 1.09001 * 109.47692 * 0.02643 * 6 5 4 32 32 H 1.09008 * 109.47345 * 120.02202 * 6 5 4 33 33 H 1.09001 * 109.47450 * 240.02112 * 6 5 4 34 34 H 0.97002 * 120.00286 * 359.97438 * 10 8 7 35 35 H 1.09003 * 109.47172 * 55.00790 * 13 11 10 36 36 H 1.09008 * 109.47085 * 175.00085 * 13 11 10 37 37 H 0.96995 * 119.99549 * 180.02562 * 17 16 14 38 38 H 1.08004 * 120.00202 * 359.97438 * 23 22 11 39 39 H 1.07999 * 119.99866 * 180.27329 * 24 23 22 40 40 H 1.08009 * 119.99546 * 179.83669 * 25 24 23 41 41 H 1.08004 * 119.99750 * 180.02562 * 26 25 24 42 42 H 1.08000 * 120.00323 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 0.0005 5 6 3.6495 -0.6008 0.0004 6 6 4.9712 -1.3246 0.0003 7 6 2.3992 -1.1697 0.0003 8 6 2.0401 -2.5992 0.0007 9 8 1.8918 -3.1887 1.0538 10 7 1.8760 -3.2531 -1.1664 11 6 1.5196 -4.6740 -1.1662 12 1 0.8595 -4.8829 -0.3244 13 6 0.8041 -5.0206 -2.4734 14 6 -0.5070 -4.2807 -2.5400 15 1 -0.8008 -3.6287 -1.7306 16 6 -1.3315 -4.4360 -3.6342 17 7 -2.4760 -3.7906 -3.6919 18 14 -0.8230 -5.5630 -5.0343 19 1 -1.3258 -6.9356 -4.7725 20 1 -1.3973 -5.0601 -6.3081 21 1 0.6584 -5.5894 -5.1355 22 6 2.7702 -5.5057 -1.0423 23 6 3.9129 -5.1421 -1.7299 24 6 5.0615 -5.9026 -1.6128 25 6 5.0645 -7.0315 -0.8151 26 6 3.9202 -7.3979 -0.1316 27 6 2.7730 -6.6351 -0.2453 28 1 -0.3632 -0.0005 -1.0277 29 1 -0.3633 -0.8898 0.5141 30 1 -0.3634 0.8902 0.5133 31 1 5.7835 -0.5978 0.0009 32 1 5.0429 -1.9503 0.8901 33 1 5.0433 -1.9495 -0.8899 34 1 1.9939 -2.7828 -2.0066 35 1 1.4289 -4.7295 -3.3178 36 1 0.6180 -6.0940 -2.5122 37 1 -3.0561 -3.9002 -4.4615 38 1 3.9094 -4.2623 -2.3563 39 1 5.9555 -5.6160 -2.1466 40 1 5.9611 -7.6271 -0.7257 41 1 3.9228 -8.2798 0.4920 42 1 1.8791 -6.9213 0.2890 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156968432.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:32 Heat of formation + Delta-G solvation = 19.346046 kcal Electronic energy + Delta-G solvation = -26167.541448 eV Core-core repulsion = 22500.657682 eV Total energy + Delta-G solvation = -3666.883767 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.95463 -41.10290 -39.70449 -36.88366 -35.63995 -34.74870 -34.54944 -32.60739 -31.67441 -30.96233 -29.83022 -28.97972 -27.00928 -25.25337 -23.58794 -23.24606 -22.14464 -21.33310 -20.95712 -19.14021 -18.98023 -18.83118 -17.71532 -17.43674 -17.05809 -16.36280 -16.16302 -15.67840 -15.56198 -15.05463 -14.86164 -14.54911 -14.45525 -14.32152 -14.19145 -14.08048 -14.03086 -13.82853 -13.59233 -13.53654 -13.43226 -13.04847 -12.57876 -12.40607 -12.15029 -11.92130 -11.74247 -11.73829 -11.43559 -11.30457 -10.96140 -10.76745 -10.43160 -10.12358 -9.72728 -9.52995 -8.27244 -6.31767 0.26881 0.51523 0.58998 0.79646 1.33528 1.37846 1.39067 1.49099 1.82552 2.32246 2.35931 2.96662 3.05999 3.10467 3.23757 3.78985 3.86241 3.97584 4.04996 4.22015 4.24139 4.34873 4.37294 4.48015 4.50029 4.57287 4.58688 4.59892 4.74659 4.76901 4.79297 4.99765 5.02236 5.08201 5.16010 5.20836 5.24926 5.48304 5.57103 5.67338 5.68524 5.85690 6.20641 6.26009 6.50474 6.75371 7.13053 7.15790 7.32216 8.88663 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.008682 B = 0.006183 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3224.195854 B = 4527.563683 C = 6907.800700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.048 3.952 3 N -0.373 5.373 4 O 0.100 5.900 5 C 0.038 3.962 6 C -0.078 4.078 7 C -0.277 4.277 8 C 0.606 3.394 9 O -0.572 6.572 10 N -0.680 5.680 11 C 0.205 3.795 12 H 0.059 0.941 13 C -0.005 4.005 14 C -0.520 4.520 15 H 0.034 0.966 16 C 0.013 3.987 17 N -0.945 5.945 18 Si 0.941 3.059 19 H -0.273 1.273 20 H -0.288 1.288 21 H -0.241 1.241 22 C -0.102 4.102 23 C -0.118 4.118 24 C -0.119 4.119 25 C -0.126 4.126 26 C -0.123 4.123 27 C -0.130 4.130 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.120 0.880 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.409 0.591 35 H 0.038 0.962 36 H 0.032 0.968 37 H 0.265 0.735 38 H 0.126 0.874 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.140 0.860 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.537 -0.045 3.631 19.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.114 4.114 3 N -0.080 5.080 4 O 0.039 5.961 5 C -0.026 4.026 6 C -0.135 4.135 7 C -0.284 4.284 8 C 0.391 3.609 9 O -0.452 6.452 10 N -0.328 5.328 11 C 0.100 3.900 12 H 0.077 0.923 13 C -0.043 4.043 14 C -0.558 4.558 15 H 0.053 0.947 16 C -0.184 4.184 17 N -0.586 5.586 18 Si 0.765 3.235 19 H -0.198 1.198 20 H -0.214 1.214 21 H -0.164 1.164 22 C -0.103 4.103 23 C -0.136 4.136 24 C -0.137 4.137 25 C -0.143 4.143 26 C -0.141 4.141 27 C -0.149 4.149 28 H 0.106 0.894 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.139 0.861 32 H 0.115 0.885 33 H 0.128 0.872 34 H 0.245 0.755 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.144 0.856 39 H 0.168 0.832 40 H 0.167 0.833 41 H 0.158 0.842 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 19.084 0.875 4.251 19.571 hybrid contribution -1.231 -0.809 -0.838 1.695 sum 17.852 0.066 3.413 18.176 Atomic orbital electron populations 1.20230 0.84734 1.04231 1.04262 1.24988 0.99206 0.86728 1.00438 1.73563 0.89598 1.23401 1.21488 1.84487 1.20900 1.23015 1.67717 1.25219 0.97994 0.83125 0.96282 1.20725 0.87430 0.99827 1.05483 1.21896 0.94220 0.94538 1.17773 1.16967 0.76062 0.84149 0.83726 1.90756 1.52740 1.69038 1.32617 1.45796 1.68069 1.10882 1.08079 1.19649 0.92242 0.78697 0.99387 0.92279 1.19748 0.94518 0.97003 0.93032 1.21206 1.03132 1.26862 1.04612 0.94725 1.25858 0.94532 0.97033 1.00997 1.70057 1.12369 1.44551 1.31589 0.85803 0.80404 0.79029 0.78284 1.19817 1.21354 1.16378 1.20314 0.95647 0.96387 0.97940 1.21092 0.92658 1.00610 0.99249 1.21441 0.98170 0.95105 0.98952 1.21488 0.98674 0.97349 0.96823 1.21368 0.92699 0.99982 1.00082 1.21161 0.99295 0.95522 0.98885 0.89434 0.91114 0.88305 0.86115 0.88529 0.87229 0.75534 0.94380 0.95023 0.92621 0.85611 0.83195 0.83271 0.84176 0.87045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.39 10.49 71.24 0.75 -1.65 16 2 C 0.05 1.57 7.59 45.16 0.34 1.91 16 3 N -0.37 -11.59 12.01 -44.78 -0.54 -12.13 16 4 O 0.10 2.66 11.06 77.00 0.85 3.51 16 5 C 0.04 0.93 7.55 25.48 0.19 1.12 16 6 C -0.08 -1.15 10.33 71.23 0.74 -0.42 16 7 C -0.28 -8.87 6.24 -18.74 -0.12 -8.99 16 8 C 0.61 22.37 7.59 86.66 0.66 23.03 16 9 O -0.57 -25.15 16.77 -4.04 -0.07 -25.22 16 10 N -0.68 -24.25 4.04 -449.41 -1.81 -26.06 16 11 C 0.20 7.95 2.11 44.25 0.09 8.04 16 12 H 0.06 2.67 7.44 -2.39 -0.02 2.65 16 13 C -0.01 -0.23 3.56 29.85 0.11 -0.13 16 14 C -0.52 -27.97 9.39 25.60 0.24 -27.73 16 15 H 0.03 2.10 7.99 -2.91 -0.02 2.08 16 16 C 0.01 0.74 5.47 84.65 0.46 1.20 16 17 N -0.95 -57.04 13.96 21.45 0.30 -56.74 16 18 Si 0.94 41.93 27.47 68.60 1.88 43.81 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.24 -9.68 6.54 99.48 0.65 -9.03 16 22 C -0.10 -3.31 4.91 -19.87 -0.10 -3.41 16 23 C -0.12 -3.11 9.32 22.27 0.21 -2.91 16 24 C -0.12 -2.46 10.05 22.27 0.22 -2.24 16 25 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 26 C -0.12 -2.94 10.05 22.27 0.22 -2.72 16 27 C -0.13 -3.99 9.67 22.27 0.22 -3.77 16 28 H 0.09 2.75 8.14 -2.38 -0.02 2.73 16 29 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.41 13.44 8.59 -92.71 -0.80 12.65 16 35 H 0.04 1.55 7.20 -2.39 -0.02 1.53 16 36 H 0.03 1.37 7.57 -2.38 -0.02 1.35 16 37 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 38 H 0.13 2.99 7.73 -2.91 -0.02 2.97 16 39 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 40 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 41 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 42 H 0.11 3.50 8.04 -2.91 -0.02 3.47 16 Total: -1.00 -72.28 366.31 5.26 -67.01 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: 0.19 Total: 26.75 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: 4.46 Total: -20.94 kcal Atomic # 7 Polarization: -92.88 SS G_CDS: -2.05 Total: -94.93 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: 0.78 Total: -21.70 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.88 Total: 43.81 kcal Total: -72.28 5.26 -67.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156968432.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.361 kcal (2) G-P(sol) polarization free energy of solvation -72.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds