Wall clock time and date at job start Tue Mar 31 2020 10:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34238 * 125.03326 * 2 1 4 4 C 1.46488 * 106.99702 * 179.97438 * 3 2 1 5 5 C 1.39627 * 134.03340 * 180.02562 * 4 3 2 6 6 C 1.36621 * 119.76561 * 179.97438 * 5 4 3 7 7 C 1.38830 * 120.52816 * 0.02562 * 6 5 4 8 8 C 1.37744 * 120.66682 * 359.97438 * 7 6 5 9 9 C 1.39122 * 119.77892 * 359.96062 * 8 7 6 10 10 N 1.36829 * 125.03694 * 179.69394 * 2 1 3 11 11 C 1.46506 * 125.05839 * 0.02562 * 10 2 1 12 12 C 1.50693 * 109.47180 * 90.02572 * 11 10 2 13 13 O 1.21283 * 120.00106 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00178 * 179.97438 * 12 11 10 15 15 C 1.47063 * 136.05729 * 359.63534 * 14 12 11 16 16 C 1.53242 * 88.08406 * 207.19857 * 15 14 12 17 17 O 1.42898 * 114.01599 * 87.71027 * 16 15 14 18 18 C 1.50698 * 114.32568 * 220.46843 * 16 15 14 19 19 H 1.07995 * 120.00542 * 93.75311 * 18 16 15 20 20 C 1.37883 * 119.99927 * 273.75922 * 18 16 15 21 21 N 1.31511 * 120.00078 * 359.97438 * 20 18 16 22 22 Si 1.86804 * 120.00003 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46803 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.46943 * 119.99630 * 22 20 18 25 25 H 1.48495 * 109.46834 * 239.99660 * 22 20 18 26 26 C 1.47068 * 136.05961 * 179.97438 * 14 12 11 27 27 H 1.09002 * 109.47152 * 90.02595 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.02696 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.02677 * 1 2 3 30 30 H 1.07998 * 126.50532 * 0.02562 * 3 2 1 31 31 H 1.08002 * 120.11675 * 0.02562 * 5 4 3 32 32 H 1.08001 * 119.73882 * 180.02562 * 6 5 4 33 33 H 1.08005 * 119.66837 * 179.97438 * 7 6 5 34 34 H 1.08003 * 120.11256 * 179.97438 * 8 7 6 35 35 H 1.09002 * 109.46552 * 210.02436 * 11 10 2 36 36 H 1.09003 * 109.47148 * 330.02285 * 11 10 2 37 37 H 1.09007 * 113.46739 * 321.93316 * 15 14 12 38 38 H 1.09001 * 113.47093 * 92.36706 * 15 14 12 39 39 H 0.96706 * 114.00021 * 86.39229 * 17 16 15 40 40 H 0.97001 * 120.00640 * 180.02562 * 21 20 18 41 41 H 1.09008 * 113.46601 * 267.62723 * 26 14 12 42 42 H 1.08994 * 113.47022 * 38.06015 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2776 1.0992 0.0000 4 6 3.6705 0.6456 0.0006 5 6 4.9041 1.2996 0.0014 6 6 6.0589 0.5695 0.0023 7 6 6.0159 -0.8181 0.0021 8 6 4.8099 -1.4836 0.0014 9 6 3.6215 -0.7602 0.0017 10 7 2.2926 -1.1203 0.0060 11 6 1.7938 -2.4978 0.0128 12 6 1.6239 -2.9776 -1.4056 13 8 1.8925 -2.2412 -2.3311 14 7 1.1734 -4.2249 -1.6457 15 6 0.7616 -5.3773 -0.8302 16 6 1.1743 -6.2837 -1.9949 17 8 2.5503 -6.6686 -1.9729 18 6 0.2346 -7.4339 -2.2495 19 1 -0.5586 -7.3328 -2.9754 20 6 0.3874 -8.6156 -1.5556 21 7 1.3535 -8.7390 -0.6719 22 14 -0.7770 -10.0417 -1.8717 23 1 -1.7689 -9.6509 -2.9054 24 1 -0.0030 -11.2166 -2.3467 25 1 -1.4849 -10.3908 -0.6139 26 6 0.8832 -5.0347 -2.8386 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 0.8902 0.5134 29 1 -0.3633 -0.8898 0.5143 30 1 1.9356 2.1236 0.0004 31 1 4.9454 2.3789 0.0020 32 1 7.0129 1.0758 0.0033 33 1 6.9373 -1.3816 0.0025 34 1 4.7869 -2.5634 0.0008 35 1 2.5066 -3.1397 0.5306 36 1 0.8329 -2.5338 0.5261 37 1 1.3704 -5.5166 0.0632 38 1 -0.3077 -5.4004 -0.6199 39 1 2.7301 -7.4557 -1.4406 40 1 1.4613 -9.5704 -0.1839 41 1 -0.1535 -4.9656 -3.1684 42 1 1.5950 -4.8831 -3.6499 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186811728.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:56 Heat of formation + Delta-G solvation = 19.820344 kcal Electronic energy + Delta-G solvation = -25829.488036 eV Core-core repulsion = 22162.624836 eV Total energy + Delta-G solvation = -3666.863199 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.37533 -39.63742 -37.69798 -36.84243 -34.12462 -32.95170 -32.28914 -31.22259 -30.35069 -29.02886 -27.06067 -26.35289 -25.27421 -24.91043 -21.91226 -21.42119 -20.58750 -19.58404 -18.44682 -17.61665 -17.03717 -16.56656 -16.31693 -15.47360 -15.18148 -15.06390 -14.97496 -14.28357 -14.25375 -14.00686 -13.68043 -13.32895 -13.06787 -12.95138 -12.86782 -12.58823 -12.51551 -12.29221 -12.13662 -11.76057 -11.66107 -11.42347 -11.26188 -11.14688 -11.08616 -10.71664 -10.55850 -10.36359 -9.85188 -9.52373 -9.29132 -8.87986 -8.53307 -8.02347 -7.93488 -7.48952 -6.49918 -4.60531 1.25651 1.76175 2.61140 2.85958 2.94243 3.07140 3.17362 3.20721 3.48478 4.07332 4.10510 4.65157 4.69039 4.72962 4.78775 4.83851 5.06705 5.13576 5.18217 5.29043 5.46148 5.49636 5.53975 5.60119 5.67573 5.78775 5.82397 5.93743 6.04095 6.07301 6.20281 6.27266 6.34503 6.46176 6.54881 6.59219 6.72561 6.89718 6.97158 6.98894 7.34239 7.38562 7.53588 7.69871 8.31571 8.43857 8.54519 9.11394 9.38548 10.56825 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.022930 B = 0.003200 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.826900 B = 8749.143008 C = 9441.865188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.094 3.906 3 C -0.212 4.212 4 C -0.104 4.104 5 C -0.077 4.077 6 C -0.150 4.150 7 C -0.105 4.105 8 C -0.122 4.122 9 C 0.109 3.891 10 N -0.461 5.461 11 C 0.096 3.904 12 C 0.516 3.484 13 O -0.544 6.544 14 N -0.633 5.633 15 C 0.068 3.932 16 C 0.241 3.759 17 O -0.571 6.571 18 C -0.534 4.534 19 H 0.074 0.926 20 C 0.072 3.928 21 N -0.898 5.898 22 Si 0.910 3.090 23 H -0.269 1.269 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.109 3.891 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.144 0.856 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.394 0.606 40 H 0.274 0.726 41 H 0.087 0.913 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.875 12.970 5.871 14.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.013 4.013 3 C -0.236 4.236 4 C -0.109 4.109 5 C -0.096 4.096 6 C -0.169 4.169 7 C -0.124 4.124 8 C -0.142 4.142 9 C 0.004 3.996 10 N -0.144 5.144 11 C -0.030 4.030 12 C 0.303 3.697 13 O -0.422 6.422 14 N -0.367 5.367 15 C -0.055 4.055 16 C 0.199 3.801 17 O -0.385 6.385 18 C -0.572 4.572 19 H 0.092 0.908 20 C -0.130 4.130 21 N -0.538 5.538 22 Si 0.736 3.264 23 H -0.194 1.194 24 H -0.205 1.205 25 H -0.206 1.206 26 C -0.013 4.013 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.162 0.838 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.251 0.749 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.089 13.644 5.188 14.637 hybrid contribution -0.679 -1.444 0.315 1.627 sum 0.410 12.200 5.503 13.390 Atomic orbital electron populations 1.20494 0.88062 1.03272 1.03356 1.20281 0.93444 0.85292 1.02263 1.21311 0.90337 0.97277 1.14697 1.19142 0.93652 0.91855 1.06203 1.20184 0.90504 0.99134 0.99729 1.20561 0.97765 0.93936 1.04618 1.20743 0.96535 0.94396 1.00767 1.20088 0.89903 0.99210 1.05003 1.18173 0.84073 0.93965 1.03427 1.43370 1.04008 1.04408 1.62565 1.21482 1.03021 0.82109 0.96395 1.20194 0.78522 0.80155 0.90862 1.90713 1.51857 1.54145 1.45482 1.49725 1.62483 1.10985 1.13556 1.24263 0.99677 0.82781 0.98794 1.19481 0.82063 0.89686 0.88840 1.86056 1.24745 1.52315 1.75345 1.21457 1.14412 0.97536 1.23815 0.90814 1.25086 0.95525 0.98853 0.93570 1.69257 1.31658 1.27659 1.25253 0.86245 0.80418 0.81291 0.78399 1.19381 1.20549 1.20621 1.23364 1.00079 0.87817 0.90086 0.90286 0.89759 0.91527 0.83805 0.86382 0.86360 0.85957 0.86472 0.86841 0.86825 0.91658 0.89776 0.74892 0.91539 0.89544 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.03 10.03 36.01 0.36 -0.67 16 2 C 0.09 1.36 6.83 -81.77 -0.56 0.80 16 3 C -0.21 -3.01 10.95 -37.67 -0.41 -3.42 16 4 C -0.10 -1.63 6.37 -105.14 -0.67 -2.30 16 5 C -0.08 -1.03 10.05 -39.65 -0.40 -1.43 16 6 C -0.15 -1.89 9.97 -39.95 -0.40 -2.29 16 7 C -0.11 -1.42 10.01 -39.54 -0.40 -1.82 16 8 C -0.12 -1.91 9.97 -39.43 -0.39 -2.31 16 9 C 0.11 1.84 6.81 -83.99 -0.57 1.27 16 10 N -0.46 -7.44 2.27 -111.13 -0.25 -7.69 16 11 C 0.10 1.47 6.08 -5.19 -0.03 1.44 16 12 C 0.52 10.11 8.15 -10.99 -0.09 10.02 16 13 O -0.54 -12.65 17.21 5.56 0.10 -12.56 16 14 N -0.63 -12.68 3.69 -185.38 -0.68 -13.36 16 15 C 0.07 1.34 7.82 -8.65 -0.07 1.28 16 16 C 0.24 5.53 1.57 -91.38 -0.14 5.38 16 17 O -0.57 -14.26 13.53 -35.23 -0.48 -14.74 16 18 C -0.53 -12.80 8.69 -34.44 -0.30 -13.10 16 19 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 20 C 0.07 1.72 5.40 -17.82 -0.10 1.63 16 21 N -0.90 -21.81 11.01 55.43 0.61 -21.20 16 22 Si 0.91 18.71 29.54 -169.99 -5.02 13.68 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 26 C 0.11 2.29 8.04 -8.51 -0.07 2.22 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.66 6.91 -51.93 -0.36 0.30 16 30 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 34 H 0.12 1.79 8.06 -52.48 -0.42 1.37 16 35 H 0.11 1.63 8.11 -51.93 -0.42 1.21 16 36 H 0.11 1.42 6.88 -51.93 -0.36 1.06 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 39 H 0.39 9.93 6.33 45.56 0.29 10.22 16 40 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 41 H 0.09 1.66 8.10 -51.92 -0.42 1.24 16 42 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 LS Contribution 358.71 15.07 5.41 5.41 Total: -1.00 -29.83 358.71 -9.60 -39.43 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -5.04 Total: 14.33 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -4.23 Total: -3.30 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: -0.33 Total: -42.25 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.38 Total: -27.30 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.68 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.83 -9.60 -39.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186811728.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.248 kcal (2) G-P(sol) polarization free energy of solvation -29.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds