Wall clock time and date at job start Tue Mar 31 2020 10:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34238 * 125.03326 * 2 1 4 4 C 1.46488 * 106.99702 * 179.97438 * 3 2 1 5 5 C 1.39627 * 134.03340 * 180.02562 * 4 3 2 6 6 C 1.36621 * 119.76561 * 179.97438 * 5 4 3 7 7 C 1.38830 * 120.52816 * 0.02562 * 6 5 4 8 8 C 1.37744 * 120.66682 * 359.97438 * 7 6 5 9 9 C 1.39122 * 119.77892 * 359.96062 * 8 7 6 10 10 N 1.36829 * 125.03694 * 179.69394 * 2 1 3 11 11 C 1.46506 * 125.05839 * 0.02562 * 10 2 1 12 12 C 1.50693 * 109.47180 * 90.02572 * 11 10 2 13 13 O 1.21283 * 120.00106 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00178 * 179.97438 * 12 11 10 15 15 C 1.47063 * 136.05729 * 359.63534 * 14 12 11 16 16 C 1.53242 * 88.08406 * 207.19857 * 15 14 12 17 17 O 1.42898 * 114.01599 * 87.71027 * 16 15 14 18 18 C 1.50698 * 114.32568 * 220.46843 * 16 15 14 19 19 H 1.07995 * 120.00542 * 93.75311 * 18 16 15 20 20 C 1.37883 * 119.99927 * 273.75922 * 18 16 15 21 21 N 1.31511 * 120.00078 * 359.97438 * 20 18 16 22 22 Si 1.86804 * 120.00003 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46803 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.46943 * 119.99630 * 22 20 18 25 25 H 1.48495 * 109.46834 * 239.99660 * 22 20 18 26 26 C 1.47068 * 136.05961 * 179.97438 * 14 12 11 27 27 H 1.09002 * 109.47152 * 90.02595 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.02696 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.02677 * 1 2 3 30 30 H 1.07998 * 126.50532 * 0.02562 * 3 2 1 31 31 H 1.08002 * 120.11675 * 0.02562 * 5 4 3 32 32 H 1.08001 * 119.73882 * 180.02562 * 6 5 4 33 33 H 1.08005 * 119.66837 * 179.97438 * 7 6 5 34 34 H 1.08003 * 120.11256 * 179.97438 * 8 7 6 35 35 H 1.09002 * 109.46552 * 210.02436 * 11 10 2 36 36 H 1.09003 * 109.47148 * 330.02285 * 11 10 2 37 37 H 1.09007 * 113.46739 * 321.93316 * 15 14 12 38 38 H 1.09001 * 113.47093 * 92.36706 * 15 14 12 39 39 H 0.96706 * 114.00021 * 86.39229 * 17 16 15 40 40 H 0.97001 * 120.00640 * 180.02562 * 21 20 18 41 41 H 1.09008 * 113.46601 * 267.62723 * 26 14 12 42 42 H 1.08994 * 113.47022 * 38.06015 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2776 1.0992 0.0000 4 6 3.6705 0.6456 0.0006 5 6 4.9041 1.2996 0.0014 6 6 6.0589 0.5695 0.0023 7 6 6.0159 -0.8181 0.0021 8 6 4.8099 -1.4836 0.0014 9 6 3.6215 -0.7602 0.0017 10 7 2.2926 -1.1203 0.0060 11 6 1.7938 -2.4978 0.0128 12 6 1.6239 -2.9776 -1.4056 13 8 1.8925 -2.2412 -2.3311 14 7 1.1734 -4.2249 -1.6457 15 6 0.7616 -5.3773 -0.8302 16 6 1.1743 -6.2837 -1.9949 17 8 2.5503 -6.6686 -1.9729 18 6 0.2346 -7.4339 -2.2495 19 1 -0.5586 -7.3328 -2.9754 20 6 0.3874 -8.6156 -1.5556 21 7 1.3535 -8.7390 -0.6719 22 14 -0.7770 -10.0417 -1.8717 23 1 -1.7689 -9.6509 -2.9054 24 1 -0.0030 -11.2166 -2.3467 25 1 -1.4849 -10.3908 -0.6139 26 6 0.8832 -5.0347 -2.8386 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 0.8902 0.5134 29 1 -0.3633 -0.8898 0.5143 30 1 1.9356 2.1236 0.0004 31 1 4.9454 2.3789 0.0020 32 1 7.0129 1.0758 0.0033 33 1 6.9373 -1.3816 0.0025 34 1 4.7869 -2.5634 0.0008 35 1 2.5066 -3.1397 0.5306 36 1 0.8329 -2.5338 0.5261 37 1 1.3704 -5.5166 0.0632 38 1 -0.3077 -5.4004 -0.6199 39 1 2.7301 -7.4557 -1.4406 40 1 1.4613 -9.5704 -0.1839 41 1 -0.1535 -4.9656 -3.1684 42 1 1.5950 -4.8831 -3.6499 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186811728.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:55 Heat of formation + Delta-G solvation = 2.295406 kcal Electronic energy + Delta-G solvation = -25830.247974 eV Core-core repulsion = 22162.624836 eV Total energy + Delta-G solvation = -3667.623138 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.49515 -41.24995 -39.26137 -37.99931 -35.94654 -34.15422 -34.10997 -32.23758 -31.51014 -30.53434 -28.36101 -27.51915 -26.93761 -26.43837 -23.04078 -22.48395 -22.14614 -20.82395 -19.99390 -19.37202 -18.31214 -18.06134 -17.38764 -17.18616 -16.73982 -16.53110 -16.04065 -15.95023 -15.51227 -15.26778 -14.90830 -14.75248 -14.51801 -14.17573 -14.01699 -13.88176 -13.80138 -13.54638 -13.44345 -13.25719 -12.98963 -12.82820 -12.78965 -12.38653 -12.33820 -12.24988 -12.16862 -11.76548 -11.47638 -11.07578 -10.71486 -10.56194 -10.28609 -9.69177 -9.05079 -8.57521 -8.29825 -6.46790 0.18326 0.66368 1.40583 1.41219 1.45129 1.51316 1.60570 1.78744 2.05036 2.39400 2.91868 2.98365 3.31157 3.60529 3.64466 3.72576 3.76898 3.93481 4.08374 4.11699 4.23150 4.38782 4.42416 4.51418 4.56339 4.57311 4.64937 4.68607 4.72683 4.81875 4.88027 4.96405 4.99366 5.07095 5.16174 5.20293 5.54686 5.67536 5.71038 5.84960 5.87895 5.93320 6.27360 6.29562 6.59391 6.73900 6.96583 7.27296 7.46060 8.76377 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.022930 B = 0.003200 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.826900 B = 8749.143008 C = 9441.865188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.077 3.923 3 C -0.219 4.219 4 C -0.128 4.128 5 C -0.081 4.081 6 C -0.149 4.149 7 C -0.106 4.106 8 C -0.151 4.151 9 C 0.075 3.925 10 N -0.472 5.472 11 C 0.104 3.896 12 C 0.513 3.487 13 O -0.585 6.585 14 N -0.633 5.633 15 C 0.085 3.915 16 C 0.219 3.781 17 O -0.588 6.588 18 C -0.551 4.551 19 H 0.075 0.925 20 C 0.034 3.966 21 N -0.916 5.916 22 Si 0.970 3.030 23 H -0.267 1.267 24 H -0.284 1.284 25 H -0.275 1.275 26 C 0.107 3.893 27 H 0.070 0.930 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.170 0.830 31 H 0.146 0.854 32 H 0.152 0.848 33 H 0.145 0.855 34 H 0.108 0.892 35 H 0.121 0.879 36 H 0.147 0.853 37 H 0.068 0.932 38 H 0.103 0.897 39 H 0.390 0.610 40 H 0.277 0.723 41 H 0.107 0.893 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.151 13.991 6.889 15.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.029 4.029 3 C -0.243 4.243 4 C -0.133 4.133 5 C -0.100 4.100 6 C -0.168 4.168 7 C -0.125 4.125 8 C -0.172 4.172 9 C -0.030 4.030 10 N -0.155 5.155 11 C -0.021 4.021 12 C 0.303 3.697 13 O -0.466 6.466 14 N -0.366 5.366 15 C -0.038 4.038 16 C 0.177 3.823 17 O -0.401 6.401 18 C -0.589 4.589 19 H 0.093 0.907 20 C -0.167 4.167 21 N -0.557 5.557 22 Si 0.795 3.205 23 H -0.191 1.191 24 H -0.210 1.210 25 H -0.201 1.201 26 C -0.016 4.016 27 H 0.089 0.911 28 H 0.131 0.869 29 H 0.095 0.905 30 H 0.188 0.812 31 H 0.163 0.837 32 H 0.170 0.830 33 H 0.162 0.838 34 H 0.126 0.874 35 H 0.139 0.861 36 H 0.164 0.836 37 H 0.087 0.913 38 H 0.121 0.879 39 H 0.246 0.754 40 H 0.087 0.913 41 H 0.125 0.875 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.358 14.680 6.219 15.947 hybrid contribution -0.352 -1.723 -0.050 1.759 sum 0.006 12.957 6.169 14.350 Atomic orbital electron populations 1.20595 0.85702 1.05224 1.03316 1.20935 0.95073 0.84927 1.01950 1.21721 0.89792 0.98533 1.14227 1.19613 0.95182 0.91739 1.06762 1.20599 0.89969 1.00684 0.98706 1.20977 0.99079 0.93571 1.03203 1.21119 0.96609 0.95340 0.99467 1.20265 0.90857 0.99069 1.06966 1.18580 0.84676 0.95053 1.04659 1.43534 1.04142 1.04759 1.63094 1.21498 1.04891 0.82323 0.93411 1.20973 0.77091 0.79358 0.92303 1.90683 1.53486 1.55183 1.47284 1.49747 1.62526 1.11320 1.13020 1.24069 1.00694 0.81387 0.97628 1.19771 0.81047 0.90331 0.91116 1.86043 1.26391 1.52165 1.75538 1.21663 1.14710 0.98377 1.24154 0.90713 1.25743 0.96786 1.00774 0.93361 1.69313 1.32509 1.28227 1.25649 0.85317 0.78597 0.78279 0.78299 1.19112 1.21004 1.20080 1.23382 1.00694 0.87588 0.89886 0.91136 0.86907 0.90538 0.81246 0.83662 0.83045 0.83754 0.87376 0.86142 0.83556 0.91335 0.87875 0.75386 0.91307 0.87547 0.93425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.81 10.03 71.24 0.71 -1.09 16 2 C 0.08 2.15 6.83 40.87 0.28 2.43 16 3 C -0.22 -5.96 10.95 23.51 0.26 -5.70 16 4 C -0.13 -3.94 6.37 -20.20 -0.13 -4.07 16 5 C -0.08 -2.05 10.05 22.23 0.22 -1.82 16 6 C -0.15 -3.48 9.97 22.03 0.22 -3.26 16 7 C -0.11 -2.80 10.01 22.29 0.22 -2.58 16 8 C -0.15 -4.85 9.97 22.37 0.22 -4.63 16 9 C 0.08 2.56 6.81 39.03 0.27 2.83 16 10 N -0.47 -15.11 2.27 -505.51 -1.15 -16.26 16 11 C 0.10 3.15 6.08 85.63 0.52 3.67 16 12 C 0.51 20.20 8.15 87.66 0.71 20.91 16 13 O -0.59 -27.79 17.21 -3.04 -0.05 -27.85 16 14 N -0.63 -25.21 3.69 -859.29 -3.17 -28.38 16 15 C 0.08 3.29 7.82 83.09 0.65 3.94 16 16 C 0.22 10.05 1.57 -11.29 -0.02 10.03 16 17 O -0.59 -29.98 13.53 -148.98 -2.02 -32.00 16 18 C -0.55 -26.21 8.69 25.60 0.22 -25.99 16 19 H 0.07 3.45 7.81 -2.91 -0.02 3.43 16 20 C 0.03 1.60 5.40 84.66 0.46 2.06 16 21 N -0.92 -44.28 11.01 21.45 0.24 -44.05 16 22 Si 0.97 37.75 29.54 68.60 2.03 39.77 16 23 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 24 H -0.28 -11.18 7.11 99.48 0.71 -10.48 16 25 H -0.28 -10.43 7.11 99.48 0.71 -9.73 16 26 C 0.11 4.55 8.04 83.18 0.67 5.22 16 27 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.08 1.33 6.91 -2.38 -0.02 1.32 16 30 H 0.17 3.49 8.06 -2.91 -0.02 3.46 16 31 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 32 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 33 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 34 H 0.11 3.49 8.06 -2.91 -0.02 3.46 16 35 H 0.12 3.44 8.11 -2.39 -0.02 3.42 16 36 H 0.15 3.36 6.88 -2.39 -0.02 3.35 16 37 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 38 H 0.10 3.62 8.10 -2.39 -0.02 3.60 16 39 H 0.39 20.08 6.33 -74.05 -0.47 19.61 16 40 H 0.28 12.66 8.31 -92.71 -0.77 11.89 16 41 H 0.11 4.04 8.10 -2.38 -0.02 4.02 16 42 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -65.01 358.71 1.94 -63.07 By element: Atomic # 1 Polarization: 43.18 SS G_CDS: 0.57 Total: 43.75 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 5.49 Total: 1.93 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -4.08 Total: -88.68 kcal Atomic # 8 Polarization: -57.78 SS G_CDS: -2.07 Total: -59.84 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.77 kcal Total: -65.01 1.94 -63.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186811728.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.364 kcal (2) G-P(sol) polarization free energy of solvation -65.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds