Wall clock time and date at job start Tue Mar 31 2020 10:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38836 * 119.66362 * 2 1 4 4 C 1.36624 * 120.52330 * 180.02562 * 3 2 1 5 5 C 1.39636 * 119.76468 * 0.03523 * 4 3 2 6 6 C 1.46486 * 134.02575 * 179.97438 * 5 4 3 7 7 C 1.50704 * 126.50250 * 359.95683 * 6 5 4 8 8 C 1.50703 * 109.46942 * 85.00037 * 7 6 5 9 9 O 1.21280 * 119.99782 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99919 * 179.97438 * 8 7 6 11 11 C 1.47572 * 134.49163 * 179.97438 * 10 8 7 12 12 C 1.53951 * 86.11583 * 155.36029 * 11 10 8 13 13 O 1.42897 * 113.74300 * 269.15347 * 12 11 10 14 14 C 1.50705 * 113.74111 * 137.95217 * 12 11 10 15 15 H 1.07995 * 119.99667 * 17.19322 * 14 12 11 16 16 C 1.37876 * 119.99899 * 197.19139 * 14 12 11 17 17 N 1.31516 * 119.99917 * 194.36987 * 16 14 12 18 18 Si 1.86802 * 120.00062 * 14.36608 * 16 14 12 19 19 H 1.48496 * 109.47125 * 180.02562 * 18 16 14 20 20 H 1.48497 * 109.47124 * 300.00105 * 18 16 14 21 21 H 1.48498 * 109.47140 * 60.00316 * 18 16 14 22 22 C 1.47814 * 134.45384 * 359.86683 * 10 8 7 23 23 C 1.34236 * 106.99418 * 180.22179 * 6 5 4 24 24 N 1.36827 * 109.93160 * 359.60624 * 23 6 5 25 25 H 0.96999 * 125.06758 * 180.15083 * 24 23 6 26 26 C 1.37685 * 109.87198 * 0.40820 * 24 23 6 27 27 C 1.37744 * 119.66591 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.46785 * 269.97760 * 1 2 3 29 29 H 1.09001 * 109.47024 * 29.97435 * 1 2 3 30 30 H 1.09001 * 109.47402 * 149.97647 * 1 2 3 31 31 H 1.07994 * 119.74121 * 0.04487 * 3 2 1 32 32 H 1.07995 * 120.11837 * 180.02562 * 4 3 2 33 33 H 1.08993 * 109.46770 * 325.00017 * 7 6 5 34 34 H 1.09003 * 109.47034 * 205.00291 * 7 6 5 35 35 H 1.09001 * 113.77187 * 41.06251 * 11 10 8 36 36 H 1.08998 * 113.77370 * 269.65834 * 11 10 8 37 37 H 0.96694 * 114.00247 * 174.14447 * 13 12 11 38 38 H 0.96994 * 119.99617 * 354.85921 * 17 16 14 39 39 H 1.09002 * 113.76589 * 90.38278 * 22 10 8 40 40 H 1.09000 * 113.83818 * 318.91814 * 22 10 8 41 41 H 1.08003 * 125.03550 * 179.72006 * 23 6 5 42 42 H 1.08004 * 120.11045 * 359.95152 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1941 1.2064 0.0000 4 6 3.5602 1.2269 -0.0005 5 6 4.2715 0.0253 -0.0018 6 6 5.6965 -0.3142 -0.0031 7 6 6.8493 0.6564 -0.0044 8 6 7.1552 1.0749 1.4108 9 8 6.5017 0.6284 2.3297 10 7 8.1555 1.9443 1.6551 11 6 8.7184 2.5573 2.8738 12 6 10.0188 2.7187 2.0657 13 8 10.9126 1.6104 2.1864 14 6 10.6996 4.0475 2.2707 15 1 10.4407 4.6614 3.1207 16 6 11.6530 4.4794 1.3732 17 7 12.4440 5.4825 1.6860 18 14 11.8213 3.6397 -0.2869 19 1 12.9114 4.2865 -1.0605 20 1 12.1428 2.2040 -0.0852 21 1 10.5440 3.7607 -1.0346 22 6 9.1304 2.6650 0.8094 23 6 5.7806 -1.6539 -0.0090 24 7 4.5261 -2.2001 -0.0027 25 1 4.3320 -3.1505 -0.0030 26 6 3.5801 -1.1997 -0.0016 27 6 2.1888 -1.1969 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6445 2.1360 0.0007 32 1 4.0880 2.1691 -0.0001 33 1 6.5845 1.5342 -0.5936 34 1 7.7267 0.1779 -0.4395 35 1 8.8055 1.8670 3.7128 36 1 8.2503 3.5032 3.1463 37 1 11.6885 1.6664 1.6121 38 1 12.3085 5.9664 2.5156 39 1 8.7833 3.6426 0.4747 40 1 9.5456 2.0606 0.0030 41 1 6.7020 -2.2173 -0.0157 42 1 1.6451 -2.1301 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186833356.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:57 Heat of formation + Delta-G solvation = 10.128742 kcal Electronic energy + Delta-G solvation = -25425.663283 eV Core-core repulsion = 21758.379824 eV Total energy + Delta-G solvation = -3667.283459 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.30385 -39.62064 -37.64677 -37.24808 -34.17160 -33.10369 -32.61978 -31.63001 -29.91496 -29.04495 -27.28489 -26.09872 -25.51194 -24.52714 -22.79579 -20.95962 -20.37511 -19.40473 -18.43533 -17.95083 -17.72886 -16.54729 -16.31550 -15.70951 -15.29390 -15.01960 -14.96310 -14.50741 -14.21543 -13.95477 -13.79434 -13.58061 -13.47235 -13.15767 -12.84301 -12.65776 -12.32972 -12.25099 -12.11859 -12.00743 -11.80543 -11.30843 -11.26517 -11.21311 -10.81175 -10.77708 -10.41922 -9.99537 -9.62472 -9.45370 -9.26289 -9.00636 -8.45548 -8.12452 -7.95469 -7.59470 -6.72825 -4.46359 1.12185 1.62830 2.61811 3.07366 3.08950 3.16332 3.18352 3.30882 3.56039 3.90895 4.17802 4.66637 4.78184 4.82721 4.83829 4.96764 5.01576 5.19336 5.24348 5.25796 5.32993 5.44727 5.51028 5.53417 5.63204 5.66389 5.77120 5.84195 5.93677 5.97595 6.08774 6.13177 6.26958 6.34401 6.48820 6.52058 6.59604 6.71517 6.74587 6.80698 7.16754 7.50745 7.56789 8.08575 8.36250 8.57694 8.71039 8.73943 9.29237 10.63309 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.024766 B = 0.003003 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.319209 B = 9320.352024 C = 9565.247067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.071 4.071 3 C -0.148 4.148 4 C -0.061 4.061 5 C -0.093 4.093 6 C -0.142 4.142 7 C -0.062 4.062 8 C 0.530 3.470 9 O -0.549 6.549 10 N -0.636 5.636 11 C 0.129 3.871 12 C 0.199 3.801 13 O -0.566 6.566 14 C -0.616 4.616 15 H 0.069 0.931 16 C 0.034 3.966 17 N -0.887 5.887 18 Si 1.041 2.959 19 H -0.279 1.279 20 H -0.280 1.280 21 H -0.272 1.272 22 C 0.057 3.943 23 C 0.058 3.942 24 N -0.596 5.596 25 H 0.414 0.586 26 C 0.100 3.900 27 C -0.135 4.135 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.366 0.634 38 H 0.274 0.726 39 H 0.094 0.906 40 H 0.065 0.935 41 H 0.169 0.831 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.002 -12.036 -8.402 22.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.072 4.072 3 C -0.167 4.167 4 C -0.080 4.080 5 C -0.098 4.098 6 C -0.150 4.150 7 C -0.102 4.102 8 C 0.319 3.681 9 O -0.427 6.427 10 N -0.371 5.371 11 C 0.007 3.993 12 C 0.158 3.842 13 O -0.374 6.374 14 C -0.654 4.654 15 H 0.087 0.913 16 C -0.173 4.173 17 N -0.520 5.520 18 Si 0.869 3.131 19 H -0.205 1.205 20 H -0.207 1.207 21 H -0.198 1.198 22 C -0.066 4.066 23 C -0.068 4.068 24 N -0.198 5.198 25 H 0.250 0.750 26 C -0.007 4.007 27 C -0.155 4.155 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.215 0.785 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.083 0.917 41 H 0.186 0.814 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -17.036 -12.743 -8.896 23.060 hybrid contribution -0.468 -0.153 1.029 1.141 sum -17.504 -12.896 -7.867 23.121 Atomic orbital electron populations 1.20743 0.91230 1.02465 1.02156 1.19494 0.95550 0.92308 0.99882 1.20471 0.93831 0.97254 1.05185 1.20263 0.93612 0.96509 0.97569 1.18994 0.92430 0.92527 1.05842 1.19608 0.91830 0.92634 1.10892 1.19879 0.96463 0.98923 0.94954 1.20219 0.78104 0.78821 0.90968 1.90659 1.49360 1.56211 1.46491 1.50192 1.32152 1.42748 1.11962 1.23169 0.90309 0.96453 0.89339 1.20418 0.86993 0.86951 0.89859 1.86375 1.36805 1.46592 1.67656 1.22201 1.26698 1.02898 1.13614 0.91252 1.25850 0.91344 0.97297 1.02855 1.70805 1.32843 1.21270 1.27092 0.84136 0.77379 0.75535 0.76080 1.20453 1.20663 1.19790 1.24673 0.88898 0.95487 0.97525 1.21519 0.87604 0.93589 1.04047 1.41616 1.04578 1.07778 1.65869 0.74980 1.18174 0.90662 0.87998 1.03891 1.19772 0.89791 0.97979 1.08001 0.91338 0.91545 0.91890 0.86216 0.86281 0.88573 0.88557 0.91046 0.89288 0.78452 0.91568 0.88790 0.91682 0.81404 0.86581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 9.99 36.01 0.36 -0.51 16 2 C -0.07 -0.80 5.88 -104.58 -0.61 -1.42 16 3 C -0.15 -1.81 9.62 -39.94 -0.38 -2.20 16 4 C -0.06 -0.87 10.05 -39.64 -0.40 -1.26 16 5 C -0.09 -1.42 6.35 -105.14 -0.67 -2.09 16 6 C -0.14 -2.12 4.81 -102.71 -0.49 -2.61 16 7 C -0.06 -0.92 5.98 -29.03 -0.17 -1.10 16 8 C 0.53 10.30 8.05 -10.98 -0.09 10.21 16 9 O -0.55 -12.52 16.76 5.56 0.09 -12.42 16 10 N -0.64 -12.77 3.61 -178.11 -0.64 -13.42 16 11 C 0.13 2.77 8.23 -2.97 -0.02 2.74 16 12 C 0.20 4.49 1.07 -90.83 -0.10 4.39 16 13 O -0.57 -12.95 13.47 -35.23 -0.47 -13.43 16 14 C -0.62 -15.81 9.04 -34.44 -0.31 -16.12 16 15 H 0.07 1.92 8.06 -52.49 -0.42 1.50 16 16 C 0.03 0.89 5.44 -17.82 -0.10 0.79 16 17 N -0.89 -24.93 13.70 55.43 0.76 -24.17 16 18 Si 1.04 21.67 24.56 -169.99 -4.17 17.49 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.28 -5.23 5.81 56.52 0.33 -4.91 16 21 H -0.27 -5.11 6.48 56.52 0.37 -4.74 16 22 C 0.06 1.12 5.39 -2.83 -0.02 1.11 16 23 C 0.06 0.72 11.73 -16.73 -0.20 0.53 16 24 N -0.60 -6.67 6.07 -10.65 -0.06 -6.74 16 25 H 0.41 3.13 8.96 -40.82 -0.37 2.76 16 26 C 0.10 1.34 7.28 -83.99 -0.61 0.73 16 27 C -0.13 -1.57 9.71 -39.43 -0.38 -1.95 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.09 1.82 8.09 -51.93 -0.42 1.40 16 37 H 0.37 7.69 6.07 45.56 0.28 7.97 16 38 H 0.27 7.71 8.73 -40.82 -0.36 7.35 16 39 H 0.09 1.80 7.97 -51.93 -0.41 1.38 16 40 H 0.06 1.16 6.87 -51.93 -0.36 0.80 16 41 H 0.17 1.60 8.06 -52.48 -0.42 1.18 16 42 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 351.88 15.07 5.30 5.30 Total: -1.00 -32.92 351.88 -8.58 -41.50 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -5.19 Total: 14.64 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -4.20 Total: -8.76 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: 0.05 Total: -44.33 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.38 Total: -25.85 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.17 Total: 17.49 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.92 -8.58 -41.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186833356.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.629 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds