Wall clock time and date at job start Tue Mar 31 2020 10:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38836 * 119.66362 * 2 1 4 4 C 1.36624 * 120.52330 * 180.02562 * 3 2 1 5 5 C 1.39636 * 119.76468 * 0.03523 * 4 3 2 6 6 C 1.46486 * 134.02575 * 179.97438 * 5 4 3 7 7 C 1.50704 * 126.50250 * 359.95683 * 6 5 4 8 8 C 1.50703 * 109.46942 * 85.00037 * 7 6 5 9 9 O 1.21280 * 119.99782 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99919 * 179.97438 * 8 7 6 11 11 C 1.47572 * 134.49163 * 179.97438 * 10 8 7 12 12 C 1.53951 * 86.11583 * 155.36029 * 11 10 8 13 13 O 1.42897 * 113.74300 * 269.15347 * 12 11 10 14 14 C 1.50705 * 113.74111 * 137.95217 * 12 11 10 15 15 H 1.07995 * 119.99667 * 17.19322 * 14 12 11 16 16 C 1.37876 * 119.99899 * 197.19139 * 14 12 11 17 17 N 1.31516 * 119.99917 * 194.36987 * 16 14 12 18 18 Si 1.86802 * 120.00062 * 14.36608 * 16 14 12 19 19 H 1.48496 * 109.47125 * 180.02562 * 18 16 14 20 20 H 1.48497 * 109.47124 * 300.00105 * 18 16 14 21 21 H 1.48498 * 109.47140 * 60.00316 * 18 16 14 22 22 C 1.47814 * 134.45384 * 359.86683 * 10 8 7 23 23 C 1.34236 * 106.99418 * 180.22179 * 6 5 4 24 24 N 1.36827 * 109.93160 * 359.60624 * 23 6 5 25 25 H 0.96999 * 125.06758 * 180.15083 * 24 23 6 26 26 C 1.37685 * 109.87198 * 0.40820 * 24 23 6 27 27 C 1.37744 * 119.66591 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.46785 * 269.97760 * 1 2 3 29 29 H 1.09001 * 109.47024 * 29.97435 * 1 2 3 30 30 H 1.09001 * 109.47402 * 149.97647 * 1 2 3 31 31 H 1.07994 * 119.74121 * 0.04487 * 3 2 1 32 32 H 1.07995 * 120.11837 * 180.02562 * 4 3 2 33 33 H 1.08993 * 109.46770 * 325.00017 * 7 6 5 34 34 H 1.09003 * 109.47034 * 205.00291 * 7 6 5 35 35 H 1.09001 * 113.77187 * 41.06251 * 11 10 8 36 36 H 1.08998 * 113.77370 * 269.65834 * 11 10 8 37 37 H 0.96694 * 114.00247 * 174.14447 * 13 12 11 38 38 H 0.96994 * 119.99617 * 354.85921 * 17 16 14 39 39 H 1.09002 * 113.76589 * 90.38278 * 22 10 8 40 40 H 1.09000 * 113.83818 * 318.91814 * 22 10 8 41 41 H 1.08003 * 125.03550 * 179.72006 * 23 6 5 42 42 H 1.08004 * 120.11045 * 359.95152 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1941 1.2064 0.0000 4 6 3.5602 1.2269 -0.0005 5 6 4.2715 0.0253 -0.0018 6 6 5.6965 -0.3142 -0.0031 7 6 6.8493 0.6564 -0.0044 8 6 7.1552 1.0749 1.4108 9 8 6.5017 0.6284 2.3297 10 7 8.1555 1.9443 1.6551 11 6 8.7184 2.5573 2.8738 12 6 10.0188 2.7187 2.0657 13 8 10.9126 1.6104 2.1864 14 6 10.6996 4.0475 2.2707 15 1 10.4407 4.6614 3.1207 16 6 11.6530 4.4794 1.3732 17 7 12.4440 5.4825 1.6860 18 14 11.8213 3.6397 -0.2869 19 1 12.9114 4.2865 -1.0605 20 1 12.1428 2.2040 -0.0852 21 1 10.5440 3.7607 -1.0346 22 6 9.1304 2.6650 0.8094 23 6 5.7806 -1.6539 -0.0090 24 7 4.5261 -2.2001 -0.0027 25 1 4.3320 -3.1505 -0.0030 26 6 3.5801 -1.1997 -0.0016 27 6 2.1888 -1.1969 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6445 2.1360 0.0007 32 1 4.0880 2.1691 -0.0001 33 1 6.5845 1.5342 -0.5936 34 1 7.7267 0.1779 -0.4395 35 1 8.8055 1.8670 3.7128 36 1 8.2503 3.5032 3.1463 37 1 11.6885 1.6664 1.6121 38 1 12.3085 5.9664 2.5156 39 1 8.7833 3.6426 0.4747 40 1 9.5456 2.0606 0.0030 41 1 6.7020 -2.2173 -0.0157 42 1 1.6451 -2.1301 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186833356.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:57 Heat of formation + Delta-G solvation = -13.563454 kcal Electronic energy + Delta-G solvation = -25426.690654 eV Core-core repulsion = 21758.379824 eV Total energy + Delta-G solvation = -3668.310830 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.23685 -41.23080 -39.16579 -38.21962 -35.93284 -34.62305 -34.12907 -32.55508 -30.96312 -30.43230 -28.57513 -27.26261 -26.87226 -26.21953 -23.70598 -21.99269 -21.82944 -20.71689 -19.93482 -19.75342 -18.68588 -18.06485 -17.44596 -17.26867 -16.67722 -16.46082 -16.06763 -15.72762 -15.29921 -15.19778 -15.11178 -14.78536 -14.62214 -14.44340 -14.15581 -13.98565 -13.77139 -13.67572 -13.37201 -12.91840 -12.87262 -12.80668 -12.40890 -12.29120 -12.11881 -12.11585 -11.72661 -11.70243 -11.29423 -11.00964 -10.85847 -10.45816 -10.25350 -9.63002 -9.04544 -8.80957 -8.52428 -6.57133 0.20168 0.69202 1.45305 1.53901 1.55790 1.70369 1.71818 2.09185 2.27338 2.47367 2.93339 2.94506 3.36161 3.75915 3.78731 3.81973 3.90115 4.00384 4.10031 4.29048 4.37715 4.40567 4.42095 4.52364 4.58353 4.61138 4.65298 4.68247 4.82390 4.87615 4.89893 4.91640 4.99002 5.05152 5.16556 5.28463 5.61342 5.65556 5.69460 5.80225 5.83649 5.92582 6.25460 6.41754 6.74363 6.82180 6.99383 7.20877 7.30132 8.54039 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.024766 B = 0.003003 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.319209 B = 9320.352024 C = 9565.247067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.079 4.079 3 C -0.153 4.153 4 C -0.090 4.090 5 C -0.126 4.126 6 C -0.183 4.183 7 C -0.050 4.050 8 C 0.527 3.473 9 O -0.588 6.588 10 N -0.635 5.635 11 C 0.121 3.879 12 C 0.192 3.808 13 O -0.573 6.573 14 C -0.623 4.623 15 H 0.028 0.972 16 C -0.011 4.011 17 N -0.922 5.922 18 Si 1.072 2.928 19 H -0.291 1.291 20 H -0.242 1.242 21 H -0.231 1.231 22 C 0.071 3.929 23 C 0.070 3.930 24 N -0.584 5.584 25 H 0.431 0.569 26 C 0.082 3.918 27 C -0.137 4.137 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.136 0.864 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.124 0.876 35 H 0.059 0.941 36 H 0.089 0.911 37 H 0.375 0.625 38 H 0.256 0.744 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.199 0.801 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.520 -14.695 -11.009 26.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.080 4.080 3 C -0.172 4.172 4 C -0.109 4.109 5 C -0.130 4.130 6 C -0.190 4.190 7 C -0.090 4.090 8 C 0.318 3.682 9 O -0.469 6.469 10 N -0.370 5.370 11 C -0.002 4.002 12 C 0.151 3.849 13 O -0.382 6.382 14 C -0.661 4.661 15 H 0.046 0.954 16 C -0.211 4.211 17 N -0.556 5.556 18 Si 0.890 3.110 19 H -0.217 1.217 20 H -0.166 1.166 21 H -0.154 1.154 22 C -0.051 4.051 23 C -0.057 4.057 24 N -0.188 5.188 25 H 0.270 0.730 26 C -0.026 4.026 27 C -0.158 4.158 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.154 0.846 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.142 0.858 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.225 0.775 38 H 0.065 0.935 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.216 0.784 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -18.590 -15.430 -11.492 26.754 hybrid contribution -0.054 0.690 1.993 2.110 sum -18.644 -14.740 -9.500 25.595 Atomic orbital electron populations 1.20790 0.88747 1.03805 1.02937 1.19925 0.97402 0.91814 0.98851 1.20778 0.93411 0.98659 1.04331 1.20413 0.94633 0.96368 0.99452 1.19349 0.93269 0.93547 1.06855 1.19767 0.91704 0.93743 1.13820 1.19864 0.97764 0.99831 0.91500 1.21132 0.76847 0.77554 0.92619 1.90634 1.50552 1.57436 1.48284 1.50194 1.32725 1.42987 1.11088 1.23115 0.90628 0.96523 0.89912 1.20353 0.86969 0.85138 0.92458 1.86357 1.37378 1.46078 1.68393 1.22298 1.27302 1.04140 1.12337 0.95404 1.27450 0.90392 0.96848 1.06417 1.70961 1.34848 1.23084 1.26676 0.83874 0.79034 0.76559 0.71528 1.21722 1.16612 1.15448 1.24527 0.87345 0.96544 0.96716 1.22005 0.88856 0.93261 1.01579 1.41634 1.03939 1.08468 1.64759 0.72953 1.18460 0.91588 0.88072 1.04442 1.20153 0.89376 0.99296 1.06939 0.90684 0.90541 0.90304 0.84593 0.86907 0.87298 0.85770 0.92211 0.89311 0.77487 0.93487 0.88116 0.88367 0.78435 0.83959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 9.99 71.24 0.71 -0.68 16 2 C -0.08 -1.63 5.88 -19.84 -0.12 -1.74 16 3 C -0.15 -3.62 9.62 22.04 0.21 -3.41 16 4 C -0.09 -2.56 10.05 22.23 0.22 -2.34 16 5 C -0.13 -3.73 6.35 -20.20 -0.13 -3.86 16 6 C -0.18 -5.14 4.81 -18.63 -0.09 -5.22 16 7 C -0.05 -1.36 5.98 29.10 0.17 -1.19 16 8 C 0.53 19.76 8.05 87.66 0.71 20.46 16 9 O -0.59 -26.75 16.76 -3.03 -0.05 -26.80 16 10 N -0.64 -24.58 3.61 -839.65 -3.03 -27.61 16 11 C 0.12 5.23 8.23 86.49 0.71 5.94 16 12 C 0.19 8.48 1.07 -10.87 -0.01 8.47 16 13 O -0.57 -25.18 13.47 -148.98 -2.01 -27.19 16 14 C -0.62 -32.60 9.04 25.60 0.23 -32.36 16 15 H 0.03 1.63 8.06 -2.91 -0.02 1.61 16 16 C -0.01 -0.55 5.44 84.65 0.46 -0.09 16 17 N -0.92 -53.30 13.70 21.45 0.29 -53.00 16 18 Si 1.07 40.90 24.56 68.60 1.68 42.59 16 19 H -0.29 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.24 -7.73 5.81 99.48 0.58 -7.16 16 21 H -0.23 -7.34 6.48 99.48 0.64 -6.70 16 22 C 0.07 2.57 5.39 86.45 0.47 3.04 16 23 C 0.07 1.56 11.73 83.00 0.97 2.53 16 24 N -0.58 -11.67 6.07 -187.61 -1.14 -12.81 16 25 H 0.43 5.27 8.96 -92.71 -0.83 4.44 16 26 C 0.08 2.06 7.28 39.03 0.28 2.34 16 27 C -0.14 -2.90 9.71 22.37 0.22 -2.68 16 28 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 30 H 0.08 0.79 8.08 -2.39 -0.02 0.77 16 31 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 32 H 0.11 3.14 8.06 -2.91 -0.02 3.11 16 33 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.09 3.76 8.09 -2.39 -0.02 3.74 16 37 H 0.37 14.68 6.07 -74.06 -0.45 14.23 16 38 H 0.26 15.21 8.73 -92.71 -0.81 14.40 16 39 H 0.10 3.54 7.97 -2.39 -0.02 3.53 16 40 H 0.10 2.95 6.87 -2.39 -0.02 2.94 16 41 H 0.20 3.00 8.06 -2.91 -0.02 2.98 16 42 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -74.73 351.88 0.33 -74.41 By element: Atomic # 1 Polarization: 41.67 SS G_CDS: -0.45 Total: 41.22 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 5.03 Total: -10.80 kcal Atomic # 7 Polarization: -89.55 SS G_CDS: -3.88 Total: -93.42 kcal Atomic # 8 Polarization: -51.93 SS G_CDS: -2.06 Total: -53.99 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 1.68 Total: 42.59 kcal Total: -74.73 0.33 -74.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186833356.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.843 kcal (2) G-P(sol) polarization free energy of solvation -74.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds