Wall clock time and date at job start Tue Mar 31 2020 11:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.36865 * 125.02333 * 2 1 4 4 H 0.96994 * 125.00648 * 0.02562 * 3 2 1 5 5 C 1.37399 * 109.98242 * 179.97438 * 3 2 1 6 6 C 1.39361 * 133.24794 * 179.97438 * 5 3 2 7 7 C 1.36319 * 120.23907 * 179.72054 * 6 5 3 8 8 C 1.40207 * 120.66570 * 0.56704 * 7 6 5 9 9 C 1.47657 * 119.97161 * 179.71347 * 8 7 6 10 10 O 1.21578 * 119.99664 * 172.75149 * 9 8 7 11 11 N 1.34777 * 120.00029 * 352.74096 * 9 8 7 12 12 C 1.47580 * 134.48966 * 174.45286 * 11 9 8 13 13 C 1.53947 * 86.11548 * 155.36113 * 12 11 9 14 14 O 1.42901 * 113.74170 * 269.15406 * 13 12 11 15 15 C 1.50698 * 113.73942 * 137.94856 * 13 12 11 16 16 H 1.08002 * 120.00637 * 1.92881 * 15 13 12 17 17 C 1.37879 * 119.99797 * 181.92244 * 15 13 12 18 18 N 1.31519 * 120.00245 * 0.02562 * 17 15 13 19 19 Si 1.86807 * 119.99978 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46926 * 180.02562 * 19 17 15 21 21 H 1.48494 * 109.46959 * 300.00243 * 19 17 15 22 22 H 1.48499 * 109.47047 * 60.00516 * 19 17 15 23 23 C 1.47813 * 134.45747 * 354.32920 * 11 9 8 24 24 C 1.39155 * 120.05326 * 359.43611 * 8 7 6 25 25 C 1.39263 * 119.39171 * 0.27313 * 24 8 7 26 26 C 1.34191 * 125.02016 * 179.97438 * 2 1 3 27 27 C 1.50706 * 126.54179 * 359.97438 * 26 2 1 28 28 H 1.09006 * 109.47049 * 270.02357 * 1 2 3 29 29 H 1.09000 * 109.47116 * 30.02349 * 1 2 3 30 30 H 1.09002 * 109.47251 * 150.02377 * 1 2 3 31 31 H 1.08005 * 119.88194 * 359.97438 * 6 5 3 32 32 H 1.08004 * 119.66977 * 180.29855 * 7 6 5 33 33 H 1.09001 * 113.77320 * 41.05877 * 12 11 9 34 34 H 1.09000 * 113.87190 * 269.67420 * 12 11 9 35 35 H 0.96700 * 113.99695 * 178.07733 * 14 13 12 36 36 H 0.96991 * 120.00267 * 180.02562 * 18 17 15 37 37 H 1.08999 * 113.77239 * 90.37100 * 23 11 9 38 38 H 1.08998 * 113.83107 * 318.90586 * 23 11 9 39 39 H 1.08001 * 120.29944 * 180.29980 * 24 8 7 40 40 H 1.08998 * 109.47075 * 270.02841 * 27 26 2 41 41 H 1.08997 * 109.46822 * 30.03149 * 27 26 2 42 42 H 1.08996 * 109.46725 * 150.02798 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2924 1.1208 0.0000 4 1 1.9612 2.0324 0.0004 5 6 3.6194 0.7643 0.0006 6 6 4.8049 1.4968 0.0004 7 6 6.0080 0.8558 0.0069 8 6 6.0720 -0.5448 0.0019 9 6 7.3835 -1.2233 0.0026 10 8 7.4431 -2.4308 0.1312 11 7 8.5144 -0.5040 -0.1394 12 6 9.9549 -0.8199 -0.0830 13 6 10.1546 0.4193 -0.9744 14 8 10.1262 0.1319 -2.3740 15 6 11.3308 1.2719 -0.5735 16 1 11.9593 0.9713 0.2518 17 6 11.6046 2.4356 -1.2603 18 7 10.8391 2.8019 -2.2651 19 14 13.0630 3.4921 -0.7638 20 1 13.1391 4.6797 -1.6520 21 1 12.8959 3.9368 0.6431 22 1 14.3130 2.7000 -0.8875 23 6 8.8091 0.9177 -0.4165 24 6 4.9006 -1.2960 0.0021 25 6 3.6703 -0.6436 0.0014 26 6 2.2770 -1.0990 0.0005 27 6 1.8004 -2.5287 0.0017 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 4.7705 2.5763 -0.0008 32 1 6.9211 1.4326 0.0115 33 1 10.2183 -1.7587 -0.5703 34 1 10.3897 -0.7203 0.9115 35 1 10.2220 0.9117 -2.9376 36 1 11.0320 3.6203 -2.7485 37 1 8.9050 1.5295 0.4805 38 1 8.1594 1.3635 -1.1696 39 1 4.9453 -2.3751 0.0031 40 1 1.6854 -2.8724 1.0296 41 1 0.8413 -2.5922 -0.5122 42 1 2.5298 -3.1552 -0.5115 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186844812.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:50 Heat of formation + Delta-G solvation = 7.421692 kcal Electronic energy + Delta-G solvation = -25546.743774 eV Core-core repulsion = 21879.342928 eV Total energy + Delta-G solvation = -3667.400845 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.41039 -39.57479 -37.54222 -36.37118 -33.93586 -33.29620 -32.20768 -31.29713 -30.09193 -28.91828 -27.64494 -26.10943 -25.37753 -25.09536 -22.75457 -21.45087 -20.09155 -19.33595 -18.41810 -17.57742 -17.43340 -16.74860 -15.79390 -15.23626 -15.13903 -14.96061 -14.55622 -14.29474 -14.10422 -13.76423 -13.41495 -13.28320 -13.10609 -12.91654 -12.83029 -12.74709 -12.47666 -12.30313 -12.15970 -11.93514 -11.60551 -11.54430 -11.19054 -11.03968 -11.03101 -10.68021 -10.49135 -10.27295 -9.60228 -9.51203 -9.18269 -8.75260 -8.35147 -8.13003 -7.77692 -7.55495 -6.37963 -4.48277 1.13439 1.39924 2.57707 2.98607 3.16877 3.22750 3.25169 3.38324 3.60441 4.19039 4.26584 4.50217 4.74269 4.85255 4.93200 4.98575 5.05167 5.12786 5.17829 5.37487 5.46407 5.55739 5.62942 5.66881 5.73883 5.75433 5.83361 5.95974 6.02736 6.22096 6.22520 6.37910 6.47295 6.51703 6.60700 6.66725 6.69678 6.76797 6.85244 7.11759 7.16901 7.44967 7.63943 7.83850 8.52934 8.54824 8.85505 9.22778 9.45312 10.68544 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.023387 B = 0.003114 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.946455 B = 8990.733109 C = 9816.451006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.064 3.936 3 N -0.591 5.591 4 H 0.413 0.587 5 C 0.117 3.883 6 C -0.141 4.141 7 C -0.073 4.073 8 C -0.149 4.149 9 C 0.575 3.425 10 O -0.566 6.566 11 N -0.628 5.628 12 C 0.113 3.887 13 C 0.239 3.761 14 O -0.571 6.571 15 C -0.537 4.537 16 H 0.071 0.929 17 C 0.072 3.928 18 N -0.898 5.898 19 Si 0.907 3.093 20 H -0.285 1.285 21 H -0.274 1.274 22 H -0.273 1.273 23 C 0.072 3.928 24 C -0.009 4.009 25 C -0.118 4.118 26 C -0.161 4.161 27 C -0.078 4.078 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.123 0.877 32 H 0.148 0.852 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.391 0.609 36 H 0.273 0.727 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.133 0.867 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.531 0.049 4.150 18.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.043 4.043 3 N -0.195 5.195 4 H 0.250 0.750 5 C 0.009 3.991 6 C -0.162 4.162 7 C -0.092 4.092 8 C -0.153 4.153 9 C 0.366 3.634 10 O -0.447 6.447 11 N -0.360 5.360 12 C -0.009 4.009 13 C 0.198 3.802 14 O -0.383 6.383 15 C -0.575 4.575 16 H 0.089 0.911 17 C -0.130 4.130 18 N -0.538 5.538 19 Si 0.734 3.266 20 H -0.211 1.211 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.050 4.050 24 C -0.028 4.028 25 C -0.122 4.122 26 C -0.168 4.168 27 C -0.135 4.135 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.141 0.859 32 H 0.165 0.835 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.246 0.754 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.151 0.849 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.841 -1.047 4.297 19.353 hybrid contribution 0.608 1.935 0.038 2.028 sum -18.232 0.888 4.335 18.762 Atomic orbital electron populations 1.20431 0.87862 1.03508 1.02917 1.20006 0.93127 0.85500 1.05667 1.41588 1.04043 1.08050 1.65797 0.75040 1.18362 0.84453 0.94116 1.02182 1.19686 0.89342 0.99183 1.07959 1.21427 0.98313 0.93830 0.95658 1.19702 0.93151 0.93604 1.08813 1.17793 0.83018 0.86075 0.76543 1.90689 1.87231 1.13899 1.52907 1.50035 1.05436 1.12160 1.68364 1.23445 0.77386 1.00485 0.99593 1.19851 0.90572 0.89229 0.80584 1.86077 1.95837 1.39469 1.16881 1.21474 1.12781 1.06221 1.17043 0.91084 1.25068 0.96514 0.97154 0.94290 1.69397 1.38430 1.25101 1.20850 0.86404 0.82321 0.79301 0.78576 1.21058 1.19929 1.19866 1.24440 0.99425 0.81515 0.99647 1.20605 0.88958 1.00006 0.93266 1.18962 0.92944 0.91899 1.08417 1.20045 0.90397 0.94816 1.11580 1.20131 1.00650 0.91066 1.01675 0.90653 0.91544 0.89775 0.85892 0.83494 0.91043 0.89548 0.75430 0.91663 0.89809 0.90684 0.84881 0.91827 0.91997 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.56 10.18 36.00 0.37 -0.19 16 2 C 0.06 0.66 7.08 -81.77 -0.58 0.08 16 3 N -0.59 -6.34 6.05 -6.92 -0.04 -6.38 16 4 H 0.41 3.09 8.96 -40.82 -0.37 2.72 16 5 C 0.12 1.65 7.27 -83.96 -0.61 1.04 16 6 C -0.14 -2.02 10.00 -39.85 -0.40 -2.42 16 7 C -0.07 -1.22 8.99 -39.53 -0.36 -1.58 16 8 C -0.15 -2.80 5.87 -104.97 -0.62 -3.42 16 9 C 0.57 12.66 7.98 -12.41 -0.10 12.56 16 10 O -0.57 -13.81 17.08 5.30 0.09 -13.72 16 11 N -0.63 -13.74 3.60 -179.30 -0.64 -14.39 16 12 C 0.11 2.50 8.23 -2.97 -0.02 2.48 16 13 C 0.24 5.72 1.40 -90.84 -0.13 5.60 16 14 O -0.57 -14.76 13.49 -35.23 -0.48 -15.24 16 15 C -0.54 -13.31 8.61 -34.44 -0.30 -13.61 16 16 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 17 C 0.07 1.78 5.40 -17.82 -0.10 1.68 16 18 N -0.90 -22.40 11.20 55.43 0.62 -21.78 16 19 Si 0.91 19.25 29.54 -169.99 -5.02 14.23 16 20 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 C 0.07 1.54 5.59 -2.84 -0.02 1.52 16 24 C -0.01 -0.15 9.64 -38.86 -0.37 -0.53 16 25 C -0.12 -1.81 6.34 -105.16 -0.67 -2.48 16 26 C -0.16 -2.02 6.32 -102.68 -0.65 -2.66 16 27 C -0.08 -0.76 10.17 36.01 0.37 -0.40 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.45 7.04 -51.93 -0.37 0.08 16 31 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 32 H 0.15 2.48 4.06 -52.48 -0.21 2.26 16 33 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 34 H 0.09 1.74 8.09 -51.93 -0.42 1.32 16 35 H 0.39 10.12 6.60 45.56 0.30 10.42 16 36 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 37 H 0.08 1.68 7.98 -51.93 -0.41 1.27 16 38 H 0.07 1.60 6.92 -51.93 -0.36 1.24 16 39 H 0.13 2.27 7.66 -52.49 -0.40 1.87 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.47 7.06 -51.93 -0.37 0.10 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 350.59 15.07 5.28 5.28 Total: -1.00 -30.44 350.59 -9.05 -39.50 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -4.69 Total: 14.81 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -4.18 Total: -2.32 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: -0.07 Total: -42.55 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.38 Total: -28.96 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.44 -9.05 -39.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186844812.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.917 kcal (2) G-P(sol) polarization free energy of solvation -30.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds