Wall clock time and date at job start Tue Mar 31 2020 11:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.36865 * 125.02333 * 2 1 4 4 H 0.96994 * 125.00648 * 0.02562 * 3 2 1 5 5 C 1.37399 * 109.98242 * 179.97438 * 3 2 1 6 6 C 1.39361 * 133.24794 * 179.97438 * 5 3 2 7 7 C 1.36319 * 120.23907 * 179.72054 * 6 5 3 8 8 C 1.40207 * 120.66570 * 0.56704 * 7 6 5 9 9 C 1.47657 * 119.97161 * 179.71347 * 8 7 6 10 10 O 1.21578 * 119.99664 * 172.75149 * 9 8 7 11 11 N 1.34777 * 120.00029 * 352.74096 * 9 8 7 12 12 C 1.47580 * 134.48966 * 174.45286 * 11 9 8 13 13 C 1.53947 * 86.11548 * 155.36113 * 12 11 9 14 14 O 1.42901 * 113.74170 * 269.15406 * 13 12 11 15 15 C 1.50698 * 113.73942 * 137.94856 * 13 12 11 16 16 H 1.08002 * 120.00637 * 1.92881 * 15 13 12 17 17 C 1.37879 * 119.99797 * 181.92244 * 15 13 12 18 18 N 1.31519 * 120.00245 * 0.02562 * 17 15 13 19 19 Si 1.86807 * 119.99978 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46926 * 180.02562 * 19 17 15 21 21 H 1.48494 * 109.46959 * 300.00243 * 19 17 15 22 22 H 1.48499 * 109.47047 * 60.00516 * 19 17 15 23 23 C 1.47813 * 134.45747 * 354.32920 * 11 9 8 24 24 C 1.39155 * 120.05326 * 359.43611 * 8 7 6 25 25 C 1.39263 * 119.39171 * 0.27313 * 24 8 7 26 26 C 1.34191 * 125.02016 * 179.97438 * 2 1 3 27 27 C 1.50706 * 126.54179 * 359.97438 * 26 2 1 28 28 H 1.09006 * 109.47049 * 270.02357 * 1 2 3 29 29 H 1.09000 * 109.47116 * 30.02349 * 1 2 3 30 30 H 1.09002 * 109.47251 * 150.02377 * 1 2 3 31 31 H 1.08005 * 119.88194 * 359.97438 * 6 5 3 32 32 H 1.08004 * 119.66977 * 180.29855 * 7 6 5 33 33 H 1.09001 * 113.77320 * 41.05877 * 12 11 9 34 34 H 1.09000 * 113.87190 * 269.67420 * 12 11 9 35 35 H 0.96700 * 113.99695 * 178.07733 * 14 13 12 36 36 H 0.96991 * 120.00267 * 180.02562 * 18 17 15 37 37 H 1.08999 * 113.77239 * 90.37100 * 23 11 9 38 38 H 1.08998 * 113.83107 * 318.90586 * 23 11 9 39 39 H 1.08001 * 120.29944 * 180.29980 * 24 8 7 40 40 H 1.08998 * 109.47075 * 270.02841 * 27 26 2 41 41 H 1.08997 * 109.46822 * 30.03149 * 27 26 2 42 42 H 1.08996 * 109.46725 * 150.02798 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2924 1.1208 0.0000 4 1 1.9612 2.0324 0.0004 5 6 3.6194 0.7643 0.0006 6 6 4.8049 1.4968 0.0004 7 6 6.0080 0.8558 0.0069 8 6 6.0720 -0.5448 0.0019 9 6 7.3835 -1.2233 0.0026 10 8 7.4431 -2.4308 0.1312 11 7 8.5144 -0.5040 -0.1394 12 6 9.9549 -0.8199 -0.0830 13 6 10.1546 0.4193 -0.9744 14 8 10.1262 0.1319 -2.3740 15 6 11.3308 1.2719 -0.5735 16 1 11.9593 0.9713 0.2518 17 6 11.6046 2.4356 -1.2603 18 7 10.8391 2.8019 -2.2651 19 14 13.0630 3.4921 -0.7638 20 1 13.1391 4.6797 -1.6520 21 1 12.8959 3.9368 0.6431 22 1 14.3130 2.7000 -0.8875 23 6 8.8091 0.9177 -0.4165 24 6 4.9006 -1.2960 0.0021 25 6 3.6703 -0.6436 0.0014 26 6 2.2770 -1.0990 0.0005 27 6 1.8004 -2.5287 0.0017 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 4.7705 2.5763 -0.0008 32 1 6.9211 1.4326 0.0115 33 1 10.2183 -1.7587 -0.5703 34 1 10.3897 -0.7203 0.9115 35 1 10.2220 0.9117 -2.9376 36 1 11.0320 3.6203 -2.7485 37 1 8.9050 1.5295 0.4805 38 1 8.1594 1.3635 -1.1696 39 1 4.9453 -2.3751 0.0031 40 1 1.6854 -2.8724 1.0296 41 1 0.8413 -2.5922 -0.5122 42 1 2.5298 -3.1552 -0.5115 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186844812.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:49 Heat of formation + Delta-G solvation = -12.712674 kcal Electronic energy + Delta-G solvation = -25547.616865 eV Core-core repulsion = 21879.342928 eV Total energy + Delta-G solvation = -3668.273937 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.45375 -41.26139 -39.20772 -37.71870 -35.83882 -34.23216 -34.13850 -32.29201 -31.31610 -30.33847 -28.82253 -27.36451 -27.16514 -26.46536 -24.11431 -22.56633 -21.73055 -20.59853 -19.81093 -19.25372 -18.63408 -18.22797 -17.49588 -16.93572 -16.42814 -16.24836 -15.98007 -15.90430 -15.38484 -15.05560 -14.93332 -14.50768 -14.25215 -14.02996 -13.95655 -13.73985 -13.66636 -13.61006 -13.54267 -13.39746 -12.89670 -12.75836 -12.74560 -12.55588 -12.34078 -12.22755 -12.19597 -11.80586 -11.40160 -10.99409 -10.63038 -10.61917 -10.20289 -9.64477 -9.18880 -8.58451 -8.24403 -6.41533 -0.11803 0.20547 1.49621 1.51773 1.58840 1.63220 1.87035 1.91946 2.09378 2.42408 2.89178 2.97999 3.41657 3.65622 3.74702 3.79006 4.01412 4.15301 4.20575 4.26790 4.34437 4.41682 4.48614 4.59257 4.68235 4.74396 4.75835 4.78645 4.82043 4.86339 4.94996 5.02965 5.10642 5.13503 5.20168 5.23454 5.36879 5.44030 5.62140 5.73977 5.80525 5.94227 6.05917 6.63719 6.64703 6.79861 7.12816 7.31633 7.45497 8.81517 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.023387 B = 0.003114 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.946455 B = 8990.733109 C = 9816.451006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.085 3.915 3 N -0.576 5.576 4 H 0.432 0.568 5 C 0.112 3.888 6 C -0.127 4.127 7 C -0.089 4.089 8 C -0.174 4.174 9 C 0.567 3.433 10 O -0.602 6.602 11 N -0.630 5.630 12 C 0.111 3.889 13 C 0.221 3.779 14 O -0.587 6.587 15 C -0.556 4.556 16 H 0.073 0.927 17 C 0.034 3.966 18 N -0.915 5.915 19 Si 0.968 3.032 20 H -0.283 1.283 21 H -0.267 1.267 22 H -0.276 1.276 23 C 0.091 3.909 24 C -0.019 4.019 25 C -0.136 4.136 26 C -0.193 4.193 27 C -0.076 4.076 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.155 0.845 32 H 0.143 0.857 33 H 0.058 0.942 34 H 0.107 0.893 35 H 0.387 0.613 36 H 0.276 0.724 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.121 0.879 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.207 2.095 4.798 21.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.022 4.022 3 N -0.180 5.180 4 H 0.272 0.728 5 C 0.002 3.998 6 C -0.147 4.147 7 C -0.109 4.109 8 C -0.178 4.178 9 C 0.360 3.640 10 O -0.487 6.487 11 N -0.362 5.362 12 C -0.011 4.011 13 C 0.179 3.821 14 O -0.398 6.398 15 C -0.594 4.594 16 H 0.091 0.909 17 C -0.167 4.167 18 N -0.555 5.555 19 Si 0.794 3.206 20 H -0.208 1.208 21 H -0.192 1.192 22 H -0.202 1.202 23 C -0.031 4.031 24 C -0.039 4.039 25 C -0.141 4.141 26 C -0.199 4.199 27 C -0.133 4.133 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.173 0.827 32 H 0.160 0.840 33 H 0.076 0.924 34 H 0.124 0.876 35 H 0.242 0.758 36 H 0.086 0.914 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.139 0.861 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.542 1.028 4.951 22.128 hybrid contribution 1.269 1.291 -0.185 1.819 sum -20.273 2.318 4.766 20.954 Atomic orbital electron populations 1.20627 0.84239 1.05229 1.04503 1.20696 0.95062 0.84422 1.02040 1.41667 1.02728 1.09415 1.64224 0.72806 1.18436 0.85871 0.93641 1.01859 1.19918 0.88458 1.00658 1.05711 1.21329 0.99314 0.92753 0.97462 1.19538 0.91692 0.94690 1.11925 1.18397 0.84101 0.85833 0.75629 1.90643 1.87862 1.15411 1.54736 1.50066 1.05327 1.12403 1.68384 1.23502 0.78087 0.99314 1.00228 1.20129 0.91889 0.90280 0.79760 1.86065 1.96032 1.39615 1.18134 1.21670 1.13393 1.06779 1.17542 0.90894 1.25738 0.98653 0.98047 0.94215 1.69464 1.39374 1.25380 1.21260 0.85444 0.79101 0.77611 0.78481 1.20799 1.19168 1.20190 1.24264 0.97649 0.81304 0.99890 1.20561 0.89720 0.99495 0.94094 1.19301 0.93581 0.93013 1.08200 1.20412 0.89194 0.96823 1.13510 1.20168 1.01439 0.89450 1.02269 0.88942 0.89489 0.88440 0.82708 0.83994 0.92362 0.87556 0.75845 0.91444 0.88378 0.90847 0.86116 0.91240 0.89297 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.67 10.18 71.23 0.72 0.05 16 2 C 0.09 1.47 7.08 40.85 0.29 1.76 16 3 N -0.58 -10.33 6.05 -175.79 -1.06 -11.39 16 4 H 0.43 4.57 8.96 -92.71 -0.83 3.74 16 5 C 0.11 2.94 7.27 39.19 0.28 3.22 16 6 C -0.13 -3.44 10.00 22.09 0.22 -3.21 16 7 C -0.09 -3.01 8.99 22.30 0.20 -2.81 16 8 C -0.17 -6.85 5.87 -20.09 -0.12 -6.97 16 9 C 0.57 26.27 7.98 86.73 0.69 26.97 16 10 O -0.60 -31.15 17.08 -3.96 -0.07 -31.22 16 11 N -0.63 -28.57 3.60 -843.29 -3.03 -31.61 16 12 C 0.11 5.06 8.23 86.49 0.71 5.78 16 13 C 0.22 10.77 1.40 -10.88 -0.02 10.75 16 14 O -0.59 -31.29 13.49 -148.98 -2.01 -33.30 16 15 C -0.56 -27.65 8.61 25.60 0.22 -27.43 16 16 H 0.07 3.51 7.81 -2.91 -0.02 3.49 16 17 C 0.03 1.68 5.40 84.65 0.46 2.13 16 18 N -0.91 -45.60 11.20 21.45 0.24 -45.36 16 19 Si 0.97 38.99 29.54 68.60 2.03 41.01 16 20 H -0.28 -11.18 7.11 99.48 0.71 -10.48 16 21 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 22 H -0.28 -11.20 7.11 99.48 0.71 -10.50 16 23 C 0.09 3.95 5.59 86.44 0.48 4.43 16 24 C -0.02 -0.69 9.64 22.74 0.22 -0.47 16 25 C -0.14 -4.13 6.34 -20.21 -0.13 -4.26 16 26 C -0.19 -4.48 6.32 -18.61 -0.12 -4.60 16 27 C -0.08 -1.38 10.17 71.24 0.72 -0.66 16 28 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.09 0.37 8.14 -2.39 -0.02 0.36 16 30 H 0.10 0.56 7.04 -2.39 -0.02 0.54 16 31 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 32 H 0.14 4.82 4.06 -2.91 -0.01 4.81 16 33 H 0.06 2.76 8.14 -2.39 -0.02 2.75 16 34 H 0.11 4.36 8.09 -2.39 -0.02 4.34 16 35 H 0.39 20.66 6.60 -74.06 -0.49 20.17 16 36 H 0.28 13.05 8.31 -92.72 -0.77 12.28 16 37 H 0.10 3.94 7.98 -2.39 -0.02 3.92 16 38 H 0.07 3.19 6.92 -2.39 -0.02 3.17 16 39 H 0.12 4.49 7.66 -2.91 -0.02 4.46 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.09 1.08 7.06 -2.39 -0.02 1.07 16 42 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -67.70 350.59 0.71 -67.00 By element: Atomic # 1 Polarization: 40.42 SS G_CDS: -0.24 Total: 40.19 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 4.85 Total: 4.68 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -3.86 Total: -88.36 kcal Atomic # 8 Polarization: -62.44 SS G_CDS: -2.08 Total: -64.52 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.01 kcal Total: -67.70 0.71 -67.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186844812.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.286 kcal (2) G-P(sol) polarization free energy of solvation -67.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds