Wall clock time and date at job start Tue Mar 31 2020 10:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37786 * 120.10598 * 2 1 4 4 C 1.38795 * 120.66246 * 179.97438 * 3 2 1 5 5 C 1.36656 * 120.53143 * 0.02562 * 4 3 2 6 6 C 1.39590 * 119.76108 * 359.97438 * 5 4 3 7 7 C 1.46493 * 134.03670 * 179.97438 * 6 5 4 8 8 C 1.50707 * 126.49880 * 0.02562 * 7 6 5 9 9 C 1.50706 * 109.46889 * 84.99939 * 8 7 6 10 10 O 1.21274 * 119.99982 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99649 * 180.02562 * 9 8 7 12 12 C 1.47577 * 134.49071 * 180.02562 * 11 9 8 13 13 C 1.53947 * 86.11678 * 155.35009 * 12 11 9 14 14 O 1.42893 * 113.74417 * 269.15203 * 13 12 11 15 15 C 1.50710 * 113.73764 * 137.94968 * 13 12 11 16 16 H 1.07994 * 120.00413 * 6.94299 * 15 13 12 17 17 C 1.37873 * 119.99460 * 186.94705 * 15 13 12 18 18 N 1.31516 * 119.99596 * 178.17803 * 17 15 13 19 19 Si 1.86799 * 120.00523 * 358.16911 * 17 15 13 20 20 H 1.48502 * 109.47432 * 270.00789 * 19 17 15 21 21 H 1.48509 * 109.46693 * 30.00560 * 19 17 15 22 22 H 1.48498 * 109.47418 * 149.99892 * 19 17 15 23 23 C 1.47812 * 134.45776 * 359.86136 * 11 9 8 24 24 C 1.34234 * 107.00127 * 180.28342 * 7 6 5 25 25 N 1.36837 * 109.93702 * 359.57454 * 24 7 6 26 26 H 0.97003 * 125.05889 * 180.18669 * 25 24 7 27 27 C 1.37691 * 109.87274 * 0.43904 * 25 24 7 28 28 H 1.09005 * 109.46964 * 90.00022 * 1 2 3 29 29 H 1.08999 * 109.47237 * 209.99945 * 1 2 3 30 30 H 1.08999 * 109.47368 * 330.00591 * 1 2 3 31 31 H 1.07997 * 119.67440 * 359.95242 * 3 2 1 32 32 H 1.08004 * 119.73435 * 179.97438 * 4 3 2 33 33 H 1.07997 * 120.12064 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.46853 * 325.00069 * 8 7 6 35 35 H 1.08999 * 109.47201 * 205.00295 * 8 7 6 36 36 H 1.08996 * 113.77269 * 41.04774 * 12 11 9 37 37 H 1.09002 * 113.76345 * 269.65063 * 12 11 9 38 38 H 0.96694 * 114.00533 * 162.49871 * 14 13 12 39 39 H 0.96997 * 120.00619 * 358.27359 * 18 17 15 40 40 H 1.09000 * 113.76478 * 90.38273 * 23 11 9 41 41 H 1.09001 * 113.83768 * 318.92464 * 23 11 9 42 42 H 1.07997 * 125.02727 * 179.73408 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1920 0.0000 4 6 3.5860 1.2055 0.0005 5 6 4.2916 0.0352 0.0005 6 6 3.6117 -1.1839 0.0006 7 6 4.0354 -2.5862 0.0001 8 6 5.4544 -3.0939 0.0000 9 6 5.9690 -3.1470 1.4155 10 8 5.2541 -2.8057 2.3337 11 7 7.2240 -3.5728 1.6606 12 6 8.0361 -3.7507 2.8800 13 6 8.8316 -4.7920 2.0720 14 8 8.3248 -6.1227 2.1915 15 6 10.3223 -4.7103 2.2784 16 1 10.7282 -4.0458 3.0267 17 6 11.1677 -5.4839 1.5119 18 7 12.4700 -5.3863 1.6672 19 14 10.4636 -6.6708 0.2529 20 1 10.2366 -7.9923 0.8912 21 1 9.1746 -6.1408 -0.2601 22 1 11.4196 -6.8225 -0.8732 23 6 8.3383 -4.0517 0.8158 24 6 2.9201 -3.3332 -0.0060 25 7 1.8166 -2.5241 0.0001 26 1 0.8977 -2.8350 0.0001 27 6 2.2048 -1.2031 0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 1.6546 2.1252 -0.0008 32 1 4.1126 2.1485 0.0001 33 1 5.3715 0.0534 0.0005 34 1 6.0800 -2.4235 -0.5892 35 1 5.4828 -4.0931 -0.4347 36 1 7.4830 -4.1743 3.7182 37 1 8.6167 -2.8697 3.1534 38 1 8.6341 -6.7249 1.5011 39 1 12.8366 -4.7522 2.3031 40 1 9.0080 -3.2593 0.4813 41 1 8.0260 -4.7151 0.0092 42 1 2.8973 -4.4129 -0.0120 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186848303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:42 Heat of formation + Delta-G solvation = -9.361395 kcal Electronic energy + Delta-G solvation = -25499.380132 eV Core-core repulsion = 21831.251518 eV Total energy + Delta-G solvation = -3668.128615 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.28397 -41.26624 -39.21056 -37.96724 -36.06858 -34.64230 -34.58216 -32.69521 -30.67956 -30.12858 -28.26584 -27.63268 -27.09836 -26.30811 -22.97765 -22.77790 -21.99820 -20.56924 -19.96589 -19.52811 -18.70020 -18.03626 -17.70040 -17.26282 -16.75580 -16.48150 -16.25071 -15.81845 -15.44161 -15.23267 -15.08345 -14.81237 -14.32462 -14.25603 -14.04856 -13.98623 -13.73435 -13.67736 -13.47904 -13.18802 -13.03996 -12.75494 -12.51970 -12.36615 -12.20345 -12.04463 -11.71693 -11.64924 -11.28018 -11.05651 -10.80559 -10.49101 -10.25518 -9.62456 -9.11777 -8.78568 -8.48853 -6.57463 0.19195 0.71435 1.39187 1.51685 1.55827 1.66713 1.70798 2.08351 2.27261 2.45701 2.86652 2.95342 3.34831 3.74219 3.78820 3.83131 3.85670 4.01350 4.13656 4.29643 4.32333 4.39540 4.42161 4.44107 4.61254 4.64409 4.66927 4.70760 4.74138 4.78687 4.87936 4.94168 4.99292 5.04104 5.07286 5.30946 5.62579 5.64152 5.68844 5.77323 5.82952 5.92213 6.25703 6.40198 6.72841 6.76961 6.85789 7.20996 7.29535 8.55722 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.027933 B = 0.002972 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.150319 B = 9419.212234 C = 9723.091998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.104 4.104 3 C -0.114 4.114 4 C -0.148 4.148 5 C -0.103 4.103 6 C -0.117 4.117 7 C -0.185 4.185 8 C -0.048 4.048 9 C 0.527 3.473 10 O -0.588 6.588 11 N -0.637 5.637 12 C 0.120 3.880 13 C 0.188 3.812 14 O -0.563 6.563 15 C -0.612 4.612 16 H 0.032 0.968 17 C -0.015 4.015 18 N -0.928 5.928 19 Si 1.072 2.928 20 H -0.261 1.261 21 H -0.222 1.222 22 H -0.285 1.285 23 C 0.076 3.924 24 C 0.073 3.927 25 N -0.582 5.582 26 H 0.429 0.571 27 C 0.078 3.922 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.150 0.850 32 H 0.138 0.862 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.125 0.875 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.363 0.637 39 H 0.256 0.744 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.165 6.842 -10.689 26.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.106 4.106 3 C -0.133 4.133 4 C -0.167 4.167 5 C -0.122 4.122 6 C -0.121 4.121 7 C -0.192 4.192 8 C -0.088 4.088 9 C 0.318 3.682 10 O -0.469 6.469 11 N -0.372 5.372 12 C -0.003 4.003 13 C 0.147 3.853 14 O -0.374 6.374 15 C -0.650 4.650 16 H 0.050 0.950 17 C -0.214 4.214 18 N -0.562 5.562 19 Si 0.892 3.108 20 H -0.187 1.187 21 H -0.146 1.146 22 H -0.212 1.212 23 C -0.046 4.046 24 C -0.055 4.055 25 N -0.186 5.186 26 H 0.269 0.731 27 C -0.029 4.029 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.168 0.832 32 H 0.156 0.844 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.143 0.857 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.214 0.786 39 H 0.065 0.935 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -23.756 6.165 -10.841 26.831 hybrid contribution 0.618 1.031 1.564 1.972 sum -23.138 7.195 -9.277 25.947 Atomic orbital electron populations 1.20726 0.88986 1.03482 1.03077 1.19281 0.97069 0.89726 1.04570 1.21032 0.93893 0.97454 1.00949 1.20880 0.94819 0.97879 1.03091 1.20408 0.99530 0.91566 1.00656 1.19358 0.93143 0.93633 1.06011 1.19770 0.93984 0.91461 1.14029 1.19847 0.92786 1.04723 0.91465 1.21131 0.79450 0.74972 0.92609 1.90633 1.57324 1.50630 1.48339 1.50237 1.11287 1.64525 1.11147 1.23122 0.90049 0.97095 0.90005 1.20520 0.91056 0.80576 0.93152 1.86463 1.74024 1.21513 1.55391 1.22387 0.91481 1.28142 1.23022 0.94992 1.27408 0.94140 0.99366 1.00533 1.70919 1.13243 1.36042 1.36005 0.83883 0.77077 0.75335 0.74484 1.18662 1.14587 1.21163 1.24553 0.85198 0.98184 0.96715 1.22018 0.84653 0.97440 1.01355 1.41610 1.09020 1.03302 1.64687 0.73111 1.18287 0.93292 0.85861 1.05452 0.90103 0.91857 0.89965 0.83249 0.84419 0.87118 0.87414 0.85749 0.91960 0.89471 0.78569 0.93475 0.88354 0.87801 0.78356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 10.02 71.24 0.71 -0.66 16 2 C -0.10 -2.18 5.89 -19.77 -0.12 -2.29 16 3 C -0.11 -2.33 9.67 22.30 0.22 -2.12 16 4 C -0.15 -3.46 9.97 22.03 0.22 -3.24 16 5 C -0.10 -2.94 10.05 22.23 0.22 -2.71 16 6 C -0.12 -3.47 6.35 -20.20 -0.13 -3.60 16 7 C -0.19 -5.16 4.81 -18.62 -0.09 -5.25 16 8 C -0.05 -1.31 5.98 29.11 0.17 -1.14 16 9 C 0.53 19.62 8.05 87.66 0.71 20.32 16 10 O -0.59 -26.64 16.76 -3.01 -0.05 -26.69 16 11 N -0.64 -24.47 3.61 -839.69 -3.03 -27.50 16 12 C 0.12 5.17 8.23 86.49 0.71 5.88 16 13 C 0.19 8.30 1.06 -10.88 -0.01 8.28 16 14 O -0.56 -24.54 13.26 -148.98 -1.98 -26.51 16 15 C -0.61 -32.22 9.05 25.60 0.23 -31.99 16 16 H 0.03 1.87 8.04 -2.91 -0.02 1.84 16 17 C -0.01 -0.78 5.47 84.65 0.46 -0.32 16 18 N -0.93 -54.16 13.70 21.45 0.29 -53.87 16 19 Si 1.07 41.86 24.78 68.60 1.70 43.56 16 20 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 21 H -0.22 -6.78 4.72 99.48 0.47 -6.31 16 22 H -0.29 -11.35 7.11 99.48 0.71 -10.64 16 23 C 0.08 2.74 6.86 86.43 0.59 3.33 16 24 C 0.07 1.59 11.73 83.00 0.97 2.57 16 25 N -0.58 -11.55 6.07 -187.61 -1.14 -12.69 16 26 H 0.43 5.32 8.87 -92.71 -0.82 4.50 16 27 C 0.08 1.96 6.95 39.03 0.27 2.23 16 28 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.06 0.73 7.99 -2.39 -0.02 0.71 16 30 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 31 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 32 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 33 H 0.11 3.11 8.06 -2.91 -0.02 3.09 16 34 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 37 H 0.09 3.69 8.09 -2.39 -0.02 3.67 16 38 H 0.36 13.73 4.32 -74.06 -0.32 13.41 16 39 H 0.26 15.29 8.71 -92.71 -0.81 14.48 16 40 H 0.10 3.47 8.09 -2.39 -0.02 3.45 16 41 H 0.10 3.11 6.56 -2.39 -0.02 3.10 16 42 H 0.20 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -75.50 350.82 0.59 -74.91 By element: Atomic # 1 Polarization: 39.85 SS G_CDS: -0.35 Total: 39.50 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 5.15 Total: -10.71 kcal Atomic # 7 Polarization: -90.19 SS G_CDS: -3.88 Total: -94.06 kcal Atomic # 8 Polarization: -51.17 SS G_CDS: -2.03 Total: -53.20 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 1.70 Total: 43.56 kcal Total: -75.50 0.59 -74.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186848303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.544 kcal (2) G-P(sol) polarization free energy of solvation -75.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds