Wall clock time and date at job start Tue Mar 31 2020 10:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38339 * 119.88415 * 2 1 4 4 C 1.38007 * 120.12144 * 180.02562 * 3 2 1 5 5 C 1.39321 * 119.88059 * 359.96845 * 4 3 2 6 6 C 1.48451 * 120.11837 * 180.02562 * 5 4 3 7 7 C 1.40645 * 126.20360 * 5.00544 * 6 5 4 8 8 C 1.38258 * 105.29770 * 179.97438 * 7 6 5 9 9 C 1.47046 * 126.78495 * 179.97438 * 8 7 6 10 10 O 1.21552 * 119.99634 * 0.02562 * 9 8 7 11 11 O 1.34808 * 120.00193 * 179.72909 * 9 8 7 12 12 C 1.45201 * 117.00044 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47141 * 179.97438 * 12 11 9 14 14 C 1.50695 * 109.47256 * 179.97438 * 13 12 11 15 15 H 1.08009 * 119.99972 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00401 * 179.97438 * 14 13 12 17 17 N 1.31506 * 119.99703 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00073 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.46978 * 60.00271 * 18 16 14 20 20 H 1.48497 * 109.46671 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.46856 * 299.99917 * 18 16 14 22 22 N 1.36715 * 106.43805 * 0.24258 * 8 7 6 23 23 H 0.96994 * 125.07352 * 179.73956 * 22 8 7 24 24 N 1.28424 * 109.85856 * 359.58555 * 22 8 7 25 25 C 1.39291 * 119.76496 * 0.28508 * 5 4 3 26 26 C 1.38053 * 119.87949 * 359.46058 * 25 5 4 27 27 C 1.50695 * 119.93963 * 180.23369 * 26 25 5 28 28 H 1.08994 * 109.47411 * 90.00311 * 1 2 3 29 29 H 1.08999 * 109.46624 * 210.00251 * 1 2 3 30 30 H 1.08999 * 109.47099 * 330.00007 * 1 2 3 31 31 H 1.07999 * 119.93729 * 0.02562 * 3 2 1 32 32 H 1.07995 * 120.05651 * 180.02562 * 4 3 2 33 33 H 1.08000 * 127.35260 * 359.94611 * 7 6 5 34 34 H 1.09001 * 109.47012 * 300.00057 * 12 11 9 35 35 H 1.09001 * 109.47271 * 59.99788 * 12 11 9 36 36 H 1.09001 * 109.47443 * 300.00074 * 13 12 11 37 37 H 1.09001 * 109.46982 * 59.99892 * 13 12 11 38 38 H 0.96996 * 120.00387 * 179.97438 * 17 16 14 39 39 H 1.07996 * 120.06379 * 179.70065 * 25 5 4 40 40 H 1.09004 * 109.47141 * 270.30145 * 27 26 25 41 41 H 1.08992 * 109.47441 * 30.30258 * 27 26 25 42 42 H 1.09002 * 109.46831 * 150.30547 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1994 0.0000 4 6 3.5763 1.2052 -0.0005 5 6 4.2754 0.0000 -0.0004 6 6 5.7599 0.0000 -0.0004 7 6 6.5907 1.1306 0.0985 8 6 7.8822 0.6391 0.0561 9 6 9.1250 1.4220 0.1243 10 8 9.0760 2.6320 0.2298 11 8 10.3187 0.7975 0.0759 12 6 11.5036 1.6336 0.1489 13 6 12.7535 0.7539 0.0801 14 6 13.9833 1.6216 0.1552 15 1 13.8833 2.6935 0.2437 16 6 15.2360 1.0474 0.1121 17 7 15.3577 -0.2577 0.0049 18 14 16.7604 2.1232 0.2046 19 1 16.7560 2.8789 1.4828 20 1 17.9735 1.2693 0.1379 21 1 16.7633 3.0763 -0.9341 22 7 7.7757 -0.7183 -0.0679 23 1 8.5237 -1.3330 -0.1262 24 7 6.5375 -1.0583 -0.0925 25 6 3.5765 -1.2048 -0.0058 26 6 2.1960 -1.1991 0.0001 27 6 1.4385 -2.5019 -0.0003 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3632 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6534 2.1331 0.0004 32 1 4.1133 2.1421 -0.0001 33 1 6.2849 2.1626 0.1880 34 1 11.5057 2.3345 -0.6859 35 1 11.5005 2.1870 1.0880 36 1 12.7512 0.0533 0.9151 37 1 12.7568 0.2002 -0.8588 38 1 16.2390 -0.6617 -0.0258 39 1 4.1135 -2.1418 -0.0106 40 1 1.2562 -2.8158 -1.0281 41 1 2.0250 -3.2634 0.5135 42 1 0.4863 -2.3686 0.5132 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187172383.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:47 Heat of formation + Delta-G solvation = -11.885744 kcal Electronic energy + Delta-G solvation = -23846.589896 eV Core-core repulsion = 20178.351818 eV Total energy + Delta-G solvation = -3668.238079 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.68979 -39.87642 -39.62751 -36.29957 -34.44961 -33.44153 -32.57381 -31.35007 -31.24883 -30.20521 -27.80713 -26.70661 -25.52955 -23.82180 -22.65666 -22.12164 -21.07824 -20.71292 -19.88321 -18.78754 -16.90162 -16.43514 -16.37618 -16.05199 -15.94543 -15.46594 -15.38334 -14.85902 -14.56028 -14.50340 -13.93019 -13.55188 -13.36068 -13.20421 -13.10242 -12.99515 -12.84994 -12.42333 -12.24747 -12.22035 -11.44350 -11.37925 -11.34066 -11.17784 -11.00110 -10.83822 -10.76070 -10.49290 -10.08200 -9.80939 -9.75490 -9.40775 -9.37248 -8.95254 -8.51086 -8.30144 -6.17252 -4.22209 0.77581 1.00976 1.18564 2.46924 2.57159 2.89263 2.98218 3.26156 3.30469 3.33610 3.66752 4.11009 4.33247 4.47221 4.54642 4.72154 4.75107 4.78394 5.01069 5.10224 5.19596 5.19714 5.22236 5.27214 5.36757 5.43614 5.52792 5.54402 5.58231 5.87253 5.90449 5.92854 5.96197 6.04556 6.27951 6.31423 6.41085 6.49870 6.68247 6.76351 6.79344 7.43476 7.50700 7.68970 7.78092 7.95771 8.14624 8.82760 9.42722 10.94119 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.044613 B = 0.001899 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.472108 B =14744.710472 C =15338.779474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.086 4.086 3 C -0.115 4.115 4 C -0.102 4.102 5 C -0.004 4.004 6 C 0.059 3.941 7 C -0.138 4.138 8 C -0.008 4.008 9 C 0.531 3.469 10 O -0.495 6.495 11 O -0.358 6.358 12 C 0.077 3.923 13 C 0.025 3.975 14 C -0.529 4.529 15 H 0.060 0.940 16 C 0.062 3.938 17 N -0.890 5.890 18 Si 0.901 3.099 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 N -0.355 5.355 23 H 0.457 0.543 24 N -0.252 5.252 25 C -0.091 4.091 26 C -0.089 4.089 27 C -0.117 4.117 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.170 0.830 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.265 0.735 39 H 0.129 0.871 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.215 -2.362 -0.237 29.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.087 4.087 3 C -0.133 4.133 4 C -0.121 4.121 5 C -0.006 4.006 6 C -0.096 4.096 7 C -0.166 4.166 8 C -0.135 4.135 9 C 0.372 3.628 10 O -0.381 6.381 11 O -0.274 6.274 12 C 0.005 3.995 13 C -0.012 4.012 14 C -0.567 4.567 15 H 0.078 0.922 16 C -0.141 4.141 17 N -0.528 5.528 18 Si 0.728 3.272 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.200 1.200 22 N -0.073 5.073 23 H 0.304 0.696 24 N -0.087 5.087 25 C -0.111 4.111 26 C -0.089 4.089 27 C -0.173 4.173 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.187 0.813 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.147 0.853 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -28.987 -3.262 -0.312 29.172 hybrid contribution 1.598 1.216 0.083 2.009 sum -27.389 -2.046 -0.228 27.467 Atomic orbital electron populations 1.20869 0.91338 1.02849 1.02346 1.19830 0.95996 0.92667 1.00187 1.20898 0.93706 0.97543 1.01194 1.21085 0.94074 0.97199 0.99759 1.17648 0.87387 0.93805 1.01769 1.20319 0.93300 0.88971 1.06987 1.22100 0.88991 1.00554 1.04994 1.20786 0.93944 0.84802 1.13954 1.19662 0.83325 0.85782 0.73984 1.90877 1.87767 1.14067 1.45438 1.86572 1.14968 1.43348 1.82528 1.23780 0.80379 0.93962 1.01383 1.19191 0.87822 0.95327 0.98910 1.20917 0.90121 0.93461 1.52241 0.92190 1.24980 0.99250 0.95124 0.94725 1.69949 1.24076 1.09532 1.49204 0.86505 0.81664 0.80146 0.78846 1.20015 1.21087 1.20020 1.43740 1.06453 1.06177 1.50885 0.69575 1.73327 0.89742 1.26731 1.18943 1.21071 0.93175 0.97714 0.99101 1.19674 0.93376 0.95009 1.00829 1.20856 1.00009 0.94055 1.02409 0.91142 0.91155 0.91605 0.85692 0.85426 0.81303 0.91827 0.91827 0.95288 0.95293 0.92578 0.85258 0.91128 0.91496 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 9.60 36.01 0.35 -0.30 16 2 C -0.09 -0.70 5.88 -104.56 -0.62 -1.32 16 3 C -0.12 -0.95 9.68 -39.63 -0.38 -1.34 16 4 C -0.10 -0.97 9.58 -39.26 -0.38 -1.34 16 5 C 0.00 -0.05 5.88 -104.89 -0.62 -0.67 16 6 C 0.06 0.75 6.98 -82.83 -0.58 0.17 16 7 C -0.14 -1.80 10.18 -38.67 -0.39 -2.19 16 8 C -0.01 -0.12 7.20 -82.11 -0.59 -0.71 16 9 C 0.53 9.18 7.95 34.30 0.27 9.46 16 10 O -0.49 -9.57 16.71 -19.31 -0.32 -9.89 16 11 O -0.36 -6.73 10.23 -40.79 -0.42 -7.15 16 12 C 0.08 1.64 5.42 37.16 0.20 1.84 16 13 C 0.02 0.62 5.35 -27.89 -0.15 0.47 16 14 C -0.53 -14.53 9.11 -34.44 -0.31 -14.85 16 15 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 18 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 22 N -0.35 -4.53 6.92 33.44 0.23 -4.30 16 23 H 0.46 4.88 8.96 -190.47 -1.71 3.18 16 24 N -0.25 -3.29 11.83 33.40 0.40 -2.90 16 25 C -0.09 -0.94 9.34 -39.26 -0.37 -1.31 16 26 C -0.09 -0.78 5.88 -104.67 -0.61 -1.39 16 27 C -0.12 -0.73 9.60 36.00 0.35 -0.39 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.33 5.93 -51.93 -0.31 0.02 16 30 H 0.06 0.30 8.08 -51.93 -0.42 -0.12 16 31 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.13 1.03 7.13 -52.49 -0.37 0.65 16 33 H 0.17 1.87 7.46 -52.49 -0.39 1.48 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.13 1.30 7.87 -52.49 -0.41 0.89 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 42 H 0.07 0.35 5.93 -51.93 -0.31 0.04 16 LS Contribution 365.31 15.07 5.51 5.51 Total: -1.00 -31.42 365.31 -9.67 -41.09 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -6.84 Total: -1.06 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -3.93 Total: -12.24 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 1.36 Total: -32.29 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.74 Total: -17.04 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.42 -9.67 -41.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187172383.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.203 kcal (2) G-P(sol) polarization free energy of solvation -31.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds