Wall clock time and date at job start Tue Mar 31 2020 10:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38339 * 119.88415 * 2 1 4 4 C 1.38007 * 120.12144 * 180.02562 * 3 2 1 5 5 C 1.39321 * 119.88059 * 359.96845 * 4 3 2 6 6 C 1.48451 * 120.11837 * 180.02562 * 5 4 3 7 7 C 1.40645 * 126.20360 * 5.00544 * 6 5 4 8 8 C 1.38258 * 105.29770 * 179.97438 * 7 6 5 9 9 C 1.47046 * 126.78495 * 179.97438 * 8 7 6 10 10 O 1.21552 * 119.99634 * 0.02562 * 9 8 7 11 11 O 1.34808 * 120.00193 * 179.72909 * 9 8 7 12 12 C 1.45201 * 117.00044 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47141 * 179.97438 * 12 11 9 14 14 C 1.50695 * 109.47256 * 179.97438 * 13 12 11 15 15 H 1.08009 * 119.99972 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00401 * 179.97438 * 14 13 12 17 17 N 1.31506 * 119.99703 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00073 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.46978 * 60.00271 * 18 16 14 20 20 H 1.48497 * 109.46671 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.46856 * 299.99917 * 18 16 14 22 22 N 1.36715 * 106.43805 * 0.24258 * 8 7 6 23 23 H 0.96994 * 125.07352 * 179.73956 * 22 8 7 24 24 N 1.28424 * 109.85856 * 359.58555 * 22 8 7 25 25 C 1.39291 * 119.76496 * 0.28508 * 5 4 3 26 26 C 1.38053 * 119.87949 * 359.46058 * 25 5 4 27 27 C 1.50695 * 119.93963 * 180.23369 * 26 25 5 28 28 H 1.08994 * 109.47411 * 90.00311 * 1 2 3 29 29 H 1.08999 * 109.46624 * 210.00251 * 1 2 3 30 30 H 1.08999 * 109.47099 * 330.00007 * 1 2 3 31 31 H 1.07999 * 119.93729 * 0.02562 * 3 2 1 32 32 H 1.07995 * 120.05651 * 180.02562 * 4 3 2 33 33 H 1.08000 * 127.35260 * 359.94611 * 7 6 5 34 34 H 1.09001 * 109.47012 * 300.00057 * 12 11 9 35 35 H 1.09001 * 109.47271 * 59.99788 * 12 11 9 36 36 H 1.09001 * 109.47443 * 300.00074 * 13 12 11 37 37 H 1.09001 * 109.46982 * 59.99892 * 13 12 11 38 38 H 0.96996 * 120.00387 * 179.97438 * 17 16 14 39 39 H 1.07996 * 120.06379 * 179.70065 * 25 5 4 40 40 H 1.09004 * 109.47141 * 270.30145 * 27 26 25 41 41 H 1.08992 * 109.47441 * 30.30258 * 27 26 25 42 42 H 1.09002 * 109.46831 * 150.30547 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1994 0.0000 4 6 3.5763 1.2052 -0.0005 5 6 4.2754 0.0000 -0.0004 6 6 5.7599 0.0000 -0.0004 7 6 6.5907 1.1306 0.0985 8 6 7.8822 0.6391 0.0561 9 6 9.1250 1.4220 0.1243 10 8 9.0760 2.6320 0.2298 11 8 10.3187 0.7975 0.0759 12 6 11.5036 1.6336 0.1489 13 6 12.7535 0.7539 0.0801 14 6 13.9833 1.6216 0.1552 15 1 13.8833 2.6935 0.2437 16 6 15.2360 1.0474 0.1121 17 7 15.3577 -0.2577 0.0049 18 14 16.7604 2.1232 0.2046 19 1 16.7560 2.8789 1.4828 20 1 17.9735 1.2693 0.1379 21 1 16.7633 3.0763 -0.9341 22 7 7.7757 -0.7183 -0.0679 23 1 8.5237 -1.3330 -0.1262 24 7 6.5375 -1.0583 -0.0925 25 6 3.5765 -1.2048 -0.0058 26 6 2.1960 -1.1991 0.0001 27 6 1.4385 -2.5019 -0.0003 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3632 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6534 2.1331 0.0004 32 1 4.1133 2.1421 -0.0001 33 1 6.2849 2.1626 0.1880 34 1 11.5057 2.3345 -0.6859 35 1 11.5005 2.1870 1.0880 36 1 12.7512 0.0533 0.9151 37 1 12.7568 0.2002 -0.8588 38 1 16.2390 -0.6617 -0.0258 39 1 4.1135 -2.1418 -0.0106 40 1 1.2562 -2.8158 -1.0281 41 1 2.0250 -3.2634 0.5135 42 1 0.4863 -2.3686 0.5132 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187172383.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:47 Heat of formation + Delta-G solvation = -28.026296 kcal Electronic energy + Delta-G solvation = -23847.289803 eV Core-core repulsion = 20178.351818 eV Total energy + Delta-G solvation = -3668.937985 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.74266 -41.30966 -40.33803 -37.85142 -35.50622 -35.16451 -33.24805 -32.67094 -32.24824 -31.78411 -28.42399 -27.36539 -27.31987 -25.25193 -23.49124 -23.01732 -22.79866 -21.81663 -20.83711 -19.97880 -18.65741 -17.87075 -17.81042 -17.35473 -16.74959 -16.59563 -16.51589 -16.16610 -15.65100 -15.12497 -15.00790 -14.91725 -14.66932 -14.38967 -14.16240 -13.82249 -13.52908 -13.42462 -13.23154 -13.13576 -12.90886 -12.72322 -12.65939 -12.63192 -12.37655 -12.00065 -11.93176 -11.65984 -11.61596 -11.57587 -11.46207 -10.94064 -10.62802 -10.48139 -9.62827 -9.06691 -8.29019 -6.42101 -0.21007 0.02870 0.50921 1.29442 1.42328 1.43942 1.49846 1.52480 1.71616 1.74878 2.38308 2.93882 3.05949 3.15665 3.48128 3.67364 3.98585 4.05717 4.09649 4.15381 4.18563 4.21676 4.39134 4.44090 4.46543 4.64266 4.74570 4.78637 4.91564 4.92410 5.02820 5.08247 5.08766 5.10961 5.27528 5.39738 5.42460 5.42976 5.53986 5.57198 5.69415 5.77903 5.82906 6.03327 6.12177 6.42149 6.71061 6.72730 7.27825 8.83105 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.044613 B = 0.001899 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.472108 B =14744.710472 C =15338.779474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.087 4.087 3 C -0.119 4.119 4 C -0.107 4.107 5 C -0.031 4.031 6 C 0.059 3.941 7 C -0.129 4.129 8 C -0.026 4.026 9 C 0.537 3.463 10 O -0.516 6.516 11 O -0.360 6.360 12 C 0.092 3.908 13 C 0.030 3.970 14 C -0.552 4.552 15 H 0.067 0.933 16 C 0.007 3.993 17 N -0.926 5.926 18 Si 0.972 3.028 19 H -0.266 1.266 20 H -0.281 1.281 21 H -0.266 1.266 22 N -0.350 5.350 23 H 0.463 0.537 24 N -0.256 5.256 25 C -0.105 4.105 26 C -0.098 4.098 27 C -0.116 4.116 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.149 0.851 32 H 0.139 0.861 33 H 0.187 0.813 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.268 0.732 39 H 0.123 0.877 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.074 -1.361 -0.167 31.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.088 4.088 3 C -0.137 4.137 4 C -0.127 4.127 5 C -0.032 4.032 6 C -0.095 4.095 7 C -0.158 4.158 8 C -0.152 4.152 9 C 0.381 3.619 10 O -0.404 6.404 11 O -0.277 6.277 12 C 0.019 3.981 13 C -0.007 4.007 14 C -0.589 4.589 15 H 0.085 0.915 16 C -0.192 4.192 17 N -0.565 5.565 18 Si 0.796 3.204 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.191 1.191 22 N -0.069 5.069 23 H 0.312 0.688 24 N -0.092 5.092 25 C -0.124 4.124 26 C -0.098 4.098 27 C -0.172 4.172 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.167 0.833 32 H 0.157 0.843 33 H 0.204 0.796 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.076 0.924 39 H 0.141 0.859 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -30.865 -2.268 -0.242 30.949 hybrid contribution 1.985 0.842 0.054 2.157 sum -28.880 -1.426 -0.188 28.916 Atomic orbital electron populations 1.20937 0.89231 1.03941 1.03231 1.20233 0.97613 0.92318 0.98615 1.21231 0.93341 0.98748 1.00357 1.21297 0.94855 0.97044 0.99494 1.17774 0.86550 0.94912 1.03990 1.20641 0.94205 0.88538 1.06137 1.22383 0.88266 1.01545 1.03566 1.20515 0.93012 0.85439 1.16276 1.19931 0.83242 0.85761 0.72994 1.90860 1.87913 1.14966 1.46634 1.86546 1.15127 1.43014 1.82978 1.23320 0.80066 0.93019 1.01671 1.19002 0.89646 0.95181 0.96902 1.21345 0.91217 0.94125 1.52262 0.91488 1.25941 1.02694 0.96480 0.94084 1.70072 1.25018 1.11358 1.50003 0.85389 0.77373 0.78331 0.79313 1.19058 1.20608 1.19064 1.43773 1.06707 1.05750 1.50705 0.68816 1.73339 0.89788 1.27084 1.18981 1.21150 0.94112 0.97293 0.99850 1.19977 0.92935 0.96500 1.00349 1.20904 1.00400 0.92840 1.03099 0.90206 0.90192 0.90468 0.83337 0.84315 0.79579 0.91472 0.91499 0.97305 0.97295 0.92353 0.85887 0.90409 0.91529 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 9.60 71.24 0.68 -0.24 16 2 C -0.09 -1.22 5.88 -19.83 -0.12 -1.34 16 3 C -0.12 -1.71 9.68 22.24 0.22 -1.49 16 4 C -0.11 -1.90 9.58 22.48 0.22 -1.68 16 5 C -0.03 -0.67 5.88 -20.04 -0.12 -0.78 16 6 C 0.06 1.48 6.98 42.48 0.30 1.77 16 7 C -0.13 -3.28 10.18 22.86 0.23 -3.05 16 8 C -0.03 -0.76 7.20 40.70 0.29 -0.47 16 9 C 0.54 18.63 7.95 70.13 0.56 19.19 16 10 O -0.52 -19.84 16.71 19.67 0.33 -19.52 16 11 O -0.36 -13.75 10.23 -57.20 -0.59 -14.34 16 12 C 0.09 3.95 5.42 71.98 0.39 4.34 16 13 C 0.03 1.55 5.35 29.85 0.16 1.71 16 14 C -0.55 -30.56 9.11 25.60 0.23 -30.33 16 15 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 16 C 0.01 0.41 5.46 84.66 0.46 0.87 16 17 N -0.93 -54.51 13.29 21.45 0.28 -54.23 16 18 Si 0.97 42.95 29.54 68.60 2.03 44.98 16 19 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 20 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 22 N -0.35 -9.00 6.92 -48.10 -0.33 -9.33 16 23 H 0.46 10.12 8.96 -220.02 -1.97 8.15 16 24 N -0.26 -6.69 11.83 -48.25 -0.57 -7.26 16 25 C -0.10 -2.12 9.34 22.48 0.21 -1.91 16 26 C -0.10 -1.58 5.88 -19.90 -0.12 -1.69 16 27 C -0.12 -1.26 9.60 71.23 0.68 -0.57 16 28 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.08 0.49 5.93 -2.39 -0.01 0.47 16 30 H 0.08 0.46 8.08 -2.39 -0.02 0.44 16 31 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 32 H 0.14 2.01 7.13 -2.91 -0.02 1.99 16 33 H 0.19 3.91 7.46 -2.91 -0.02 3.88 16 34 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 35 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 36 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 39 H 0.12 2.53 7.87 -2.91 -0.02 2.50 16 40 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.07 0.72 8.09 -2.39 -0.02 0.70 16 42 H 0.09 0.64 5.93 -2.39 -0.01 0.63 16 Total: -1.00 -67.08 365.31 4.51 -62.56 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -0.92 Total: 12.81 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: 4.28 Total: -15.68 kcal Atomic # 7 Polarization: -70.20 SS G_CDS: -0.62 Total: -70.82 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -0.26 Total: -33.85 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -67.08 4.51 -62.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187172383.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.538 kcal (2) G-P(sol) polarization free energy of solvation -67.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds