Wall clock time and date at job start Tue Mar 31 2020 11:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38220 * 120.42100 * 2 1 4 4 N 1.31860 * 120.76284 * 179.97438 * 3 2 1 5 5 C 1.31884 * 121.72590 * 0.02562 * 4 3 2 6 6 C 1.38176 * 120.76784 * 0.02562 * 5 4 3 7 7 C 1.38627 * 120.41849 * 179.97438 * 2 1 3 8 8 C 1.50705 * 120.78771 * 0.02562 * 7 2 1 9 9 C 1.50699 * 109.47052 * 85.02337 * 8 7 2 10 10 O 1.21283 * 120.00045 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00006 * 179.97438 * 9 8 7 12 12 C 1.46504 * 119.99978 * 359.97438 * 11 9 8 13 13 C 1.50705 * 109.46993 * 89.99992 * 12 11 9 14 14 H 1.07997 * 119.99982 * 359.97438 * 13 12 11 15 15 C 1.37868 * 119.99846 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00341 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00198 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47180 * 59.99869 * 17 15 13 19 19 H 1.48499 * 109.47420 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47068 * 300.00173 * 17 15 13 21 21 C 1.46500 * 120.00224 * 180.02562 * 11 9 8 22 22 C 1.50699 * 109.47319 * 89.99909 * 21 11 9 23 23 C 1.34522 * 125.78693 * 90.00173 * 22 21 11 24 24 C 1.41381 * 106.83525 * 180.02562 * 23 22 21 25 25 C 1.34516 * 106.84612 * 0.02562 * 24 23 22 26 26 O 1.34300 * 108.41824 * 359.73681 * 25 24 23 27 27 H 1.08993 * 109.47197 * 270.02066 * 1 2 3 28 28 H 1.09005 * 109.46763 * 30.02164 * 1 2 3 29 29 H 1.09000 * 109.47166 * 150.01378 * 1 2 3 30 30 H 1.07999 * 119.62072 * 0.02562 * 3 2 1 31 31 H 1.07995 * 119.61420 * 179.97438 * 5 4 3 32 32 H 1.07994 * 120.42499 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.46791 * 205.01950 * 8 7 2 34 34 H 1.08990 * 109.47344 * 325.02359 * 8 7 2 35 35 H 1.09000 * 109.47218 * 210.00014 * 12 11 9 36 36 H 1.08990 * 109.47114 * 329.99910 * 12 11 9 37 37 H 0.96997 * 120.00367 * 180.02562 * 16 15 13 38 38 H 1.09004 * 109.47160 * 210.00249 * 21 11 9 39 39 H 1.09001 * 109.47005 * 330.00227 * 21 11 9 40 40 H 1.07995 * 126.58033 * 359.96633 * 23 22 21 41 41 H 1.08001 * 126.57471 * 179.97438 * 24 23 22 42 42 H 1.07997 * 125.78783 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2256 0.0822 0.0005 6 6 3.5948 -1.1472 -0.0005 7 6 2.2089 -1.1954 0.0005 8 6 1.4830 -2.5162 0.0005 9 6 1.1336 -2.8973 -1.4150 10 8 1.4430 -2.1681 -2.3333 11 7 0.4772 -4.0485 -1.6604 12 6 0.1038 -4.9297 -0.5511 13 6 -1.2650 -4.5506 -0.0473 14 1 -1.8028 -3.7348 -0.5071 15 6 -1.8302 -5.2448 1.0013 16 7 -1.1746 -6.2374 1.5622 17 14 -3.5266 -4.7746 1.6263 18 1 -4.5157 -4.9162 0.5277 19 1 -3.9045 -5.6670 2.7514 20 1 -3.5079 -3.3663 2.0970 21 6 0.1380 -4.4194 -3.0365 22 6 1.2624 -5.2279 -3.6306 23 6 1.3815 -6.5668 -3.5783 24 6 2.5764 -6.8984 -4.2574 25 6 3.1163 -5.7424 -4.6836 26 8 2.3133 -4.7344 -4.3057 27 1 -0.3633 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8901 -0.5136 30 1 1.6675 2.1276 0.0004 31 1 5.3046 0.1284 0.0005 32 1 4.1736 -2.0589 -0.0009 33 1 2.1239 -3.2830 0.4356 34 1 0.5699 -2.4289 0.5892 35 1 0.0904 -5.9633 -0.8968 36 1 0.8295 -4.8258 0.2555 37 1 -1.5724 -6.7260 2.2997 38 1 -0.7765 -5.0127 -3.0380 39 1 -0.0133 -3.5172 -3.6291 40 1 0.6965 -7.2560 -3.1071 41 1 2.9789 -7.8897 -4.4050 42 1 4.0371 -5.6422 -5.2390 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188329690.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:22 Heat of formation + Delta-G solvation = 8.735160 kcal Electronic energy + Delta-G solvation = -26117.744529 eV Core-core repulsion = 22450.400640 eV Total energy + Delta-G solvation = -3667.343889 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.21804 -40.28319 -38.90733 -35.32748 -34.07567 -32.88934 -32.55554 -32.18352 -30.60997 -28.44215 -27.40399 -26.89028 -25.25074 -23.13787 -22.52984 -21.49663 -21.38268 -20.28526 -18.61336 -17.23678 -16.67696 -16.50403 -16.41487 -16.10865 -15.81209 -15.01122 -14.84062 -14.67370 -14.51135 -14.02308 -13.79459 -13.19410 -12.88794 -12.66908 -12.52207 -12.51308 -12.48779 -12.40848 -12.20464 -12.06363 -11.68265 -11.55194 -11.36154 -11.04857 -10.98448 -10.81801 -10.29986 -9.94110 -9.62146 -9.51459 -9.24300 -9.05361 -8.66970 -8.63710 -8.22140 -7.95124 -6.28695 -4.37517 1.37017 1.49077 1.99253 2.86685 3.14253 3.17196 3.23567 3.25394 3.45104 3.83829 4.10850 4.25723 4.65033 4.89011 4.95626 5.02467 5.05083 5.18913 5.23951 5.24914 5.31600 5.42088 5.62384 5.72517 5.74122 5.84329 5.87797 5.93090 5.98648 6.07506 6.18609 6.21317 6.24483 6.38320 6.38614 6.57374 6.66148 6.79415 6.95215 7.06384 7.34234 7.48431 7.65016 7.92435 8.14352 8.17730 8.66013 8.85095 9.31350 10.77981 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.007727 B = 0.006316 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3622.776028 B = 4432.449571 C = 7312.492106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.117 4.117 3 C 0.092 3.908 4 N -0.490 5.490 5 C 0.085 3.915 6 C -0.158 4.158 7 C -0.012 4.012 8 C -0.103 4.103 9 C 0.524 3.476 10 O -0.557 6.557 11 N -0.592 5.592 12 C 0.237 3.763 13 C -0.544 4.544 14 H 0.062 0.938 15 C 0.068 3.932 16 N -0.888 5.888 17 Si 0.896 3.104 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.196 3.804 22 C -0.016 4.016 23 C -0.202 4.202 24 C -0.216 4.216 25 C -0.053 4.053 26 O -0.167 6.167 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.130 0.870 33 H 0.102 0.898 34 H 0.121 0.879 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.267 0.733 38 H 0.112 0.888 39 H 0.089 0.911 40 H 0.149 0.851 41 H 0.144 0.856 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.876 3.758 -4.703 8.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.119 4.119 3 C -0.065 4.065 4 N -0.199 5.199 5 C -0.071 4.071 6 C -0.178 4.178 7 C -0.020 4.020 8 C -0.142 4.142 9 C 0.312 3.688 10 O -0.436 6.436 11 N -0.323 5.323 12 C 0.117 3.883 13 C -0.582 4.582 14 H 0.081 0.919 15 C -0.136 4.136 16 N -0.526 5.526 17 Si 0.723 3.277 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 C 0.073 3.927 22 C -0.067 4.067 23 C -0.222 4.222 24 C -0.236 4.236 25 C -0.121 4.121 26 O -0.062 6.062 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.168 0.832 31 H 0.168 0.832 32 H 0.148 0.852 33 H 0.120 0.880 34 H 0.139 0.861 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.130 0.870 39 H 0.107 0.893 40 H 0.167 0.833 41 H 0.161 0.839 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 6.499 5.093 -5.064 9.686 hybrid contribution -1.236 -1.283 0.495 1.848 sum 5.264 3.810 -4.569 7.944 Atomic orbital electron populations 1.20765 0.90256 1.03518 1.02525 1.20759 0.97621 0.93481 1.00077 1.22528 0.89905 0.97144 0.96901 1.67586 1.08365 1.31435 1.12522 1.22556 0.99932 0.87720 0.96892 1.21985 0.94556 0.99579 1.01702 1.19799 0.93427 0.94421 0.94346 1.20717 1.03012 0.94101 0.96416 1.20215 0.77396 0.80880 0.90316 1.90659 1.54762 1.51880 1.46320 1.48277 1.55530 1.21435 1.07055 1.19507 0.95984 0.89544 0.83258 1.21428 1.01858 1.17789 1.17140 0.91931 1.24931 0.97930 0.94624 0.96096 1.69907 1.38087 1.20571 1.24043 0.86583 0.83959 0.78604 0.78528 1.20046 1.21126 1.19983 1.19691 0.91233 0.98690 0.83116 1.23234 0.91145 0.93619 0.98745 1.21675 1.00125 0.94976 1.05452 1.21790 0.97895 0.99121 1.04751 1.23962 0.97635 0.85704 1.04791 1.84110 1.29375 1.36423 1.56303 0.90753 0.91430 0.90680 0.83206 0.83210 0.85192 0.87987 0.86128 0.94331 0.94287 0.92324 0.86967 0.89266 0.83342 0.83867 0.78733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.62 9.30 36.00 0.33 -1.28 16 2 C -0.12 -1.85 5.90 -104.49 -0.62 -2.47 16 3 C 0.09 1.38 10.86 -17.55 -0.19 1.19 16 4 N -0.49 -7.72 10.36 -13.26 -0.14 -7.86 16 5 C 0.09 1.24 11.18 -17.55 -0.20 1.04 16 6 C -0.16 -2.41 9.80 -39.44 -0.39 -2.79 16 7 C -0.01 -0.19 4.41 -104.31 -0.46 -0.65 16 8 C -0.10 -1.81 3.74 -29.03 -0.11 -1.92 16 9 C 0.52 10.40 6.99 -10.99 -0.08 10.32 16 10 O -0.56 -12.24 15.61 5.55 0.09 -12.16 16 11 N -0.59 -11.74 2.44 -176.43 -0.43 -12.17 16 12 C 0.24 5.19 4.97 -5.19 -0.03 5.17 16 13 C -0.54 -12.96 9.28 -34.44 -0.32 -13.28 16 14 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 15 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -23.15 13.29 55.43 0.74 -22.41 16 17 Si 0.90 19.35 29.54 -169.99 -5.02 14.33 16 18 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 19 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 21 C 0.20 3.53 5.94 -5.19 -0.03 3.50 16 22 C -0.02 -0.28 6.90 -35.62 -0.25 -0.52 16 23 C -0.20 -3.30 10.81 -39.70 -0.43 -3.73 16 24 C -0.22 -3.09 10.91 -39.70 -0.43 -3.52 16 25 C -0.05 -0.75 12.09 29.42 0.36 -0.39 16 26 O -0.17 -2.98 10.65 5.71 0.06 -2.92 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 29 H 0.07 1.23 6.35 -51.93 -0.33 0.90 16 30 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 31 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.10 1.70 7.33 -51.93 -0.38 1.32 16 34 H 0.12 2.17 6.96 -51.93 -0.36 1.81 16 35 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 36 H 0.04 0.89 6.44 -51.93 -0.33 0.55 16 37 H 0.27 6.68 8.31 -40.82 -0.34 6.35 16 38 H 0.11 1.87 8.07 -51.93 -0.42 1.45 16 39 H 0.09 1.61 7.42 -51.93 -0.39 1.22 16 40 H 0.15 2.32 8.06 -52.49 -0.42 1.89 16 41 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.20 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 363.10 15.07 5.47 5.47 Total: -1.00 -29.84 363.10 -7.71 -37.55 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.56 Total: 7.91 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -2.93 Total: -7.76 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 0.17 Total: -42.44 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: 0.15 Total: -15.07 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.84 -7.71 -37.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188329690.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.288 kcal (2) G-P(sol) polarization free energy of solvation -29.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds