Wall clock time and date at job start Tue Mar 31 2020 11:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38220 * 120.42100 * 2 1 4 4 N 1.31860 * 120.76284 * 179.97438 * 3 2 1 5 5 C 1.31884 * 121.72590 * 0.02562 * 4 3 2 6 6 C 1.38176 * 120.76784 * 0.02562 * 5 4 3 7 7 C 1.38627 * 120.41849 * 179.97438 * 2 1 3 8 8 C 1.50705 * 120.78771 * 0.02562 * 7 2 1 9 9 C 1.50699 * 109.47052 * 85.02337 * 8 7 2 10 10 O 1.21283 * 120.00045 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00006 * 179.97438 * 9 8 7 12 12 C 1.46504 * 119.99978 * 359.97438 * 11 9 8 13 13 C 1.50705 * 109.46993 * 89.99992 * 12 11 9 14 14 H 1.07997 * 119.99982 * 359.97438 * 13 12 11 15 15 C 1.37868 * 119.99846 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00341 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00198 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47180 * 59.99869 * 17 15 13 19 19 H 1.48499 * 109.47420 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47068 * 300.00173 * 17 15 13 21 21 C 1.46500 * 120.00224 * 180.02562 * 11 9 8 22 22 C 1.50699 * 109.47319 * 89.99909 * 21 11 9 23 23 C 1.34522 * 125.78693 * 90.00173 * 22 21 11 24 24 C 1.41381 * 106.83525 * 180.02562 * 23 22 21 25 25 C 1.34516 * 106.84612 * 0.02562 * 24 23 22 26 26 O 1.34300 * 108.41824 * 359.73681 * 25 24 23 27 27 H 1.08993 * 109.47197 * 270.02066 * 1 2 3 28 28 H 1.09005 * 109.46763 * 30.02164 * 1 2 3 29 29 H 1.09000 * 109.47166 * 150.01378 * 1 2 3 30 30 H 1.07999 * 119.62072 * 0.02562 * 3 2 1 31 31 H 1.07995 * 119.61420 * 179.97438 * 5 4 3 32 32 H 1.07994 * 120.42499 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.46791 * 205.01950 * 8 7 2 34 34 H 1.08990 * 109.47344 * 325.02359 * 8 7 2 35 35 H 1.09000 * 109.47218 * 210.00014 * 12 11 9 36 36 H 1.08990 * 109.47114 * 329.99910 * 12 11 9 37 37 H 0.96997 * 120.00367 * 180.02562 * 16 15 13 38 38 H 1.09004 * 109.47160 * 210.00249 * 21 11 9 39 39 H 1.09001 * 109.47005 * 330.00227 * 21 11 9 40 40 H 1.07995 * 126.58033 * 359.96633 * 23 22 21 41 41 H 1.08001 * 126.57471 * 179.97438 * 24 23 22 42 42 H 1.07997 * 125.78783 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2256 0.0822 0.0005 6 6 3.5948 -1.1472 -0.0005 7 6 2.2089 -1.1954 0.0005 8 6 1.4830 -2.5162 0.0005 9 6 1.1336 -2.8973 -1.4150 10 8 1.4430 -2.1681 -2.3333 11 7 0.4772 -4.0485 -1.6604 12 6 0.1038 -4.9297 -0.5511 13 6 -1.2650 -4.5506 -0.0473 14 1 -1.8028 -3.7348 -0.5071 15 6 -1.8302 -5.2448 1.0013 16 7 -1.1746 -6.2374 1.5622 17 14 -3.5266 -4.7746 1.6263 18 1 -4.5157 -4.9162 0.5277 19 1 -3.9045 -5.6670 2.7514 20 1 -3.5079 -3.3663 2.0970 21 6 0.1380 -4.4194 -3.0365 22 6 1.2624 -5.2279 -3.6306 23 6 1.3815 -6.5668 -3.5783 24 6 2.5764 -6.8984 -4.2574 25 6 3.1163 -5.7424 -4.6836 26 8 2.3133 -4.7344 -4.3057 27 1 -0.3633 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8901 -0.5136 30 1 1.6675 2.1276 0.0004 31 1 5.3046 0.1284 0.0005 32 1 4.1736 -2.0589 -0.0009 33 1 2.1239 -3.2830 0.4356 34 1 0.5699 -2.4289 0.5892 35 1 0.0904 -5.9633 -0.8968 36 1 0.8295 -4.8258 0.2555 37 1 -1.5724 -6.7260 2.2997 38 1 -0.7765 -5.0127 -3.0380 39 1 -0.0133 -3.5172 -3.6291 40 1 0.6965 -7.2560 -3.1071 41 1 2.9789 -7.8897 -4.4050 42 1 4.0371 -5.6422 -5.2390 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188329690.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:20 Heat of formation + Delta-G solvation = -6.732849 kcal Electronic energy + Delta-G solvation = -26118.415272 eV Core-core repulsion = 22450.400640 eV Total energy + Delta-G solvation = -3668.014632 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.46795 -41.55984 -40.37783 -36.95941 -35.36470 -34.64595 -33.87272 -33.37066 -31.99119 -29.75970 -29.14095 -28.06144 -26.64496 -24.91258 -23.74956 -22.71014 -22.61231 -21.54011 -20.12372 -18.80655 -18.21984 -17.89777 -17.76571 -17.54997 -17.11045 -16.45875 -16.20020 -16.12433 -15.96783 -15.32081 -15.08978 -14.39899 -14.38151 -14.20967 -13.90686 -13.76398 -13.67764 -13.62127 -13.60635 -13.42629 -13.22630 -13.01240 -12.89309 -12.63173 -12.49738 -12.24706 -12.08088 -11.76482 -11.04585 -10.83645 -10.59104 -10.42655 -10.36366 -9.78864 -9.68689 -9.40558 -8.19132 -6.33422 0.22473 0.26478 0.73788 1.45721 1.47333 1.53691 1.62017 1.69169 2.16407 2.37185 2.47282 2.88946 3.12637 3.54716 3.65944 3.73280 3.80955 3.87555 4.03683 4.08711 4.14957 4.17664 4.37808 4.42936 4.53399 4.55130 4.58834 4.75930 4.76033 4.84012 4.91935 4.93462 5.02603 5.05400 5.18910 5.19334 5.25068 5.46101 5.59643 5.64069 5.76744 5.81507 6.04856 6.23944 6.49212 6.79281 7.02626 7.22520 7.40036 8.86692 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.007727 B = 0.006316 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3622.776028 B = 4432.449571 C = 7312.492106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.130 4.130 3 C 0.089 3.911 4 N -0.505 5.505 5 C 0.084 3.916 6 C -0.167 4.167 7 C -0.033 4.033 8 C -0.094 4.094 9 C 0.523 3.477 10 O -0.579 6.579 11 N -0.593 5.593 12 C 0.253 3.747 13 C -0.545 4.545 14 H 0.059 0.941 15 C 0.027 3.973 16 N -0.918 5.918 17 Si 0.952 3.048 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.268 1.268 21 C 0.196 3.804 22 C -0.044 4.044 23 C -0.205 4.205 24 C -0.222 4.222 25 C -0.045 4.045 26 O -0.192 6.192 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.048 0.952 30 H 0.177 0.823 31 H 0.182 0.818 32 H 0.144 0.856 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.024 0.976 36 H 0.030 0.970 37 H 0.267 0.733 38 H 0.118 0.882 39 H 0.083 0.917 40 H 0.150 0.850 41 H 0.173 0.827 42 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.534 4.201 -4.955 9.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.132 4.132 3 C -0.068 4.068 4 N -0.214 5.214 5 C -0.072 4.072 6 C -0.186 4.186 7 C -0.042 4.042 8 C -0.133 4.133 9 C 0.312 3.688 10 O -0.460 6.460 11 N -0.324 5.324 12 C 0.133 3.867 13 C -0.584 4.584 14 H 0.077 0.923 15 C -0.174 4.174 16 N -0.557 5.557 17 Si 0.777 3.223 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.193 1.193 21 C 0.073 3.927 22 C -0.095 4.095 23 C -0.225 4.225 24 C -0.241 4.241 25 C -0.112 4.112 26 O -0.088 6.088 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.067 0.933 30 H 0.194 0.806 31 H 0.199 0.801 32 H 0.162 0.838 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.042 0.958 36 H 0.048 0.952 37 H 0.076 0.924 38 H 0.136 0.864 39 H 0.102 0.898 40 H 0.167 0.833 41 H 0.191 0.809 42 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 7.150 5.535 -5.328 10.495 hybrid contribution -1.366 -1.446 0.501 2.051 sum 5.785 4.089 -4.827 8.572 Atomic orbital electron populations 1.20748 0.89584 1.03150 1.03191 1.20972 0.98326 0.93618 1.00288 1.22951 0.89923 0.97873 0.96019 1.67665 1.08784 1.31978 1.12930 1.23059 1.01416 0.87058 0.95668 1.22220 0.94168 1.00719 1.01523 1.19892 0.94302 0.94136 0.95851 1.20607 1.02860 0.95138 0.94709 1.20558 0.76789 0.80410 0.91011 1.90632 1.55721 1.52422 1.47258 1.48261 1.55449 1.21245 1.07396 1.19152 0.95078 0.89003 0.83473 1.21611 1.02469 1.17341 1.16936 0.92285 1.25581 1.00931 0.94574 0.96336 1.70000 1.39505 1.21597 1.24624 0.85699 0.80243 0.78438 0.77904 1.19753 1.21160 1.19342 1.19704 0.92139 0.98729 0.82123 1.23062 0.91819 0.93991 1.00650 1.21894 1.00966 0.94544 1.05078 1.22145 0.97003 1.00698 1.04248 1.24859 0.97941 0.84864 1.03584 1.84087 1.29910 1.38018 1.56819 0.89552 0.89434 0.93298 0.80560 0.80134 0.83804 0.87573 0.86962 0.95776 0.95188 0.92353 0.86365 0.89827 0.83251 0.80915 0.74615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.07 9.30 71.24 0.66 -2.41 16 2 C -0.13 -4.02 5.90 -19.78 -0.12 -4.14 16 3 C 0.09 2.52 10.86 84.68 0.92 3.44 16 4 N -0.50 -15.05 10.36 -195.85 -2.03 -17.07 16 5 C 0.08 2.29 11.18 84.67 0.95 3.24 16 6 C -0.17 -4.92 9.80 22.36 0.22 -4.70 16 7 C -0.03 -1.11 4.41 -19.66 -0.09 -1.20 16 8 C -0.09 -3.36 3.74 29.10 0.11 -3.25 16 9 C 0.52 21.22 6.99 87.66 0.61 21.83 16 10 O -0.58 -25.92 15.61 -3.04 -0.05 -25.97 16 11 N -0.59 -24.11 2.44 -830.50 -2.03 -26.14 16 12 C 0.25 11.39 4.97 85.63 0.43 11.81 16 13 C -0.55 -26.28 9.28 25.60 0.24 -26.04 16 14 H 0.06 2.85 7.81 -2.91 -0.02 2.83 16 15 C 0.03 1.32 5.46 84.65 0.46 1.78 16 16 N -0.92 -48.19 13.29 21.44 0.28 -47.90 16 17 Si 0.95 39.47 29.54 68.60 2.03 41.50 16 18 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 19 H -0.29 -11.82 7.11 99.48 0.71 -11.12 16 20 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 21 C 0.20 7.26 5.94 85.63 0.51 7.76 16 22 C -0.04 -1.58 6.90 24.83 0.17 -1.40 16 23 C -0.20 -6.61 10.81 22.19 0.24 -6.37 16 24 C -0.22 -5.90 10.91 22.19 0.24 -5.66 16 25 C -0.05 -1.19 12.09 66.97 0.81 -0.38 16 26 O -0.19 -6.76 10.65 -2.48 -0.03 -6.79 16 27 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.09 2.04 8.09 -2.38 -0.02 2.02 16 29 H 0.05 1.62 6.35 -2.39 -0.02 1.60 16 30 H 0.18 3.85 8.06 -2.91 -0.02 3.83 16 31 H 0.18 3.62 8.06 -2.91 -0.02 3.59 16 32 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 33 H 0.11 3.62 7.33 -2.39 -0.02 3.60 16 34 H 0.11 4.16 6.96 -2.39 -0.02 4.15 16 35 H 0.02 1.15 8.07 -2.39 -0.02 1.13 16 36 H 0.03 1.41 6.44 -2.39 -0.02 1.39 16 37 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 38 H 0.12 4.08 8.07 -2.38 -0.02 4.07 16 39 H 0.08 3.13 7.42 -2.39 -0.02 3.11 16 40 H 0.15 4.68 8.06 -2.91 -0.02 4.66 16 41 H 0.17 3.45 8.06 -2.91 -0.02 3.43 16 42 H 0.24 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -63.54 363.10 5.57 -57.97 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: 1.03 Total: 30.09 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 6.36 Total: -5.68 kcal Atomic # 7 Polarization: -87.35 SS G_CDS: -3.77 Total: -91.12 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -0.07 Total: -32.76 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -63.54 5.57 -57.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188329690.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.235 kcal (2) G-P(sol) polarization free energy of solvation -63.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds