Wall clock time and date at job start Tue Mar 31 2020 11:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38116 * 126.29454 * 2 1 4 4 C 1.47289 * 126.42947 * 359.97438 * 3 2 1 5 5 O 1.21521 * 119.99711 * 0.02562 * 4 3 2 6 6 O 1.34753 * 119.99737 * 180.02562 * 4 3 2 7 7 C 1.45201 * 116.99523 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.47020 * 179.97438 * 7 6 4 9 9 C 1.50709 * 109.47033 * 180.02562 * 8 7 6 10 10 H 1.07996 * 119.99644 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99837 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00200 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99907 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47030 * 89.99801 * 13 11 9 15 15 H 1.48503 * 109.46712 * 209.99836 * 13 11 9 16 16 H 1.48497 * 109.46849 * 329.99652 * 13 11 9 17 17 C 1.41342 * 107.14647 * 180.02562 * 3 2 1 18 18 N 1.30434 * 108.01213 * 359.97438 * 17 3 2 19 19 N 1.34225 * 126.29066 * 180.02562 * 2 1 3 20 20 C 1.46497 * 125.75033 * 359.97104 * 19 2 1 21 21 C 1.50699 * 109.46911 * 270.03058 * 20 19 2 22 22 C 1.38238 * 120.00035 * 269.72308 * 21 20 19 23 23 C 1.38239 * 120.00005 * 179.77135 * 22 21 20 24 24 C 1.38234 * 119.99811 * 0.50146 * 23 22 21 25 25 C 1.38234 * 120.00337 * 359.75561 * 24 23 22 26 26 C 1.38233 * 120.00085 * 90.00025 * 21 20 19 27 27 H 1.08999 * 109.47289 * 89.97614 * 1 2 3 28 28 H 1.09005 * 109.47225 * 209.97467 * 1 2 3 29 29 H 1.08994 * 109.47238 * 329.97143 * 1 2 3 30 30 H 1.08999 * 109.47618 * 299.99803 * 7 6 4 31 31 H 1.09001 * 109.47168 * 59.99578 * 7 6 4 32 32 H 1.08992 * 109.47273 * 299.99902 * 8 7 6 33 33 H 1.08996 * 109.46755 * 60.00358 * 8 7 6 34 34 H 0.96993 * 120.00287 * 179.97438 * 12 11 9 35 35 H 1.08000 * 125.99724 * 180.02562 * 17 3 2 36 36 H 1.09000 * 109.46857 * 30.02585 * 20 19 2 37 37 H 1.08993 * 109.47128 * 150.02802 * 20 19 2 38 38 H 1.07996 * 119.99599 * 359.97438 * 22 21 20 39 39 H 1.07999 * 120.00117 * 180.23217 * 23 22 21 40 40 H 1.07996 * 120.00246 * 179.72490 * 24 23 22 41 41 H 1.07995 * 120.00387 * 179.97438 * 25 24 23 42 42 H 1.08001 * 120.00018 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1132 0.0000 4 6 1.8872 2.5196 -0.0005 5 8 0.7018 2.7872 -0.0006 6 8 2.8015 3.5095 -0.0010 7 6 2.2982 4.8715 -0.0021 8 6 3.4746 5.8499 -0.0018 9 6 2.9523 7.2635 -0.0023 10 1 1.8878 7.4459 -0.0023 11 6 3.8334 8.3240 -0.0027 12 7 5.1297 8.1019 -0.0021 13 14 3.1860 10.0763 -0.0026 14 1 3.0150 10.5406 1.3975 15 1 4.1517 10.9607 -0.7030 16 1 1.8769 10.1203 -0.7022 17 6 3.6598 0.6496 -0.0006 18 7 3.6339 -0.6545 -0.0004 19 7 2.3015 -1.0819 -0.0005 20 6 1.8498 -2.4755 -0.0005 21 6 1.6948 -2.9533 1.4203 22 6 2.7608 -3.5467 2.0702 23 6 2.6200 -3.9807 3.3751 24 6 1.4101 -3.8306 4.0266 25 6 0.3425 -3.2420 3.3751 26 6 0.4849 -2.8033 2.0718 27 1 -0.3634 0.0004 -1.0276 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3633 0.8897 0.5142 30 1 1.6906 5.0338 -0.8923 31 1 1.6900 5.0349 0.8876 32 1 4.0819 5.6877 0.8886 33 1 4.0830 5.6866 -0.8913 34 1 5.7496 8.8479 -0.0028 35 1 4.5460 1.2668 -0.0004 36 1 0.8911 -2.5466 -0.5144 37 1 2.5843 -3.0955 -0.5143 38 1 3.7046 -3.6683 1.5595 39 1 3.4540 -4.4410 3.8841 40 1 1.2988 -4.1737 5.0446 41 1 -0.6029 -3.1252 3.8839 42 1 -0.3492 -2.3433 1.5628 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193337408.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:21 Heat of formation + Delta-G solvation = -15.424406 kcal Electronic energy + Delta-G solvation = -24578.357116 eV Core-core repulsion = 20909.965589 eV Total energy + Delta-G solvation = -3668.391526 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.65162 -40.92631 -40.08133 -37.52651 -35.49317 -35.32461 -33.31311 -32.41529 -31.85127 -31.60656 -28.82370 -27.40791 -26.89302 -24.25111 -23.60341 -22.95768 -22.75742 -21.63235 -20.54104 -19.09153 -18.36106 -17.91007 -17.47610 -17.39803 -16.86670 -16.59898 -16.43548 -16.05595 -15.79667 -15.33512 -14.89050 -14.60005 -14.41146 -14.34364 -14.18127 -14.03238 -13.71333 -13.55636 -13.33643 -13.19659 -13.09296 -12.99336 -12.57144 -12.54685 -12.22151 -12.00256 -11.90239 -11.72760 -11.46988 -11.40980 -11.25238 -10.59386 -10.48481 -9.90671 -9.88657 -9.79422 -8.25015 -6.38135 0.10720 0.31282 0.43645 0.97917 1.34089 1.42550 1.44350 1.55680 1.94366 2.14834 2.42602 2.83584 3.09280 3.40631 3.51157 3.59401 3.80609 3.86043 3.97175 4.06542 4.22034 4.27846 4.31090 4.33438 4.37188 4.45337 4.54372 4.60082 4.65397 4.74139 4.85042 4.98249 5.01950 5.09728 5.26951 5.35517 5.47633 5.49976 5.52853 5.56356 5.60500 5.75807 5.80629 6.02038 6.08994 6.42277 6.75005 6.87966 7.31437 8.87789 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.024960 B = 0.002265 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.520324 B =12357.613089 C =12434.496617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.178 3.822 3 C -0.313 4.313 4 C 0.536 3.464 5 O -0.545 6.545 6 O -0.363 6.363 7 C 0.094 3.906 8 C 0.031 3.969 9 C -0.548 4.548 10 H 0.066 0.934 11 C 0.005 3.995 12 N -0.928 5.928 13 Si 0.974 3.026 14 H -0.270 1.270 15 H -0.279 1.279 16 H -0.262 1.262 17 C 0.100 3.900 18 N -0.310 5.310 19 N -0.345 5.345 20 C 0.163 3.837 21 C -0.131 4.131 22 C -0.105 4.105 23 C -0.135 4.135 24 C -0.117 4.117 25 C -0.132 4.132 26 C -0.110 4.110 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.005 0.995 33 H 0.006 0.994 34 H 0.267 0.733 35 H 0.203 0.797 36 H 0.137 0.863 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.220 -29.276 3.601 31.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.044 3.956 3 C -0.326 4.326 4 C 0.383 3.617 5 O -0.438 6.438 6 O -0.279 6.279 7 C 0.021 3.979 8 C -0.006 4.006 9 C -0.586 4.586 10 H 0.084 0.916 11 C -0.194 4.194 12 N -0.567 5.567 13 Si 0.798 3.202 14 H -0.195 1.195 15 H -0.204 1.204 16 H -0.186 1.186 17 C -0.087 4.087 18 N -0.128 5.128 19 N -0.124 5.124 20 C 0.044 3.956 21 C -0.132 4.132 22 C -0.124 4.124 23 C -0.153 4.153 24 C -0.135 4.135 25 C -0.150 4.150 26 C -0.128 4.128 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.024 0.976 33 H 0.025 0.975 34 H 0.076 0.924 35 H 0.219 0.781 36 H 0.155 0.845 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.155 0.845 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.688 -30.322 3.573 32.032 hybrid contribution -0.122 1.944 0.100 1.950 sum -9.810 -28.377 3.673 30.249 Atomic orbital electron populations 1.20927 0.83901 1.05639 1.05621 1.21807 0.96010 0.85628 0.92170 1.19186 0.94720 0.89785 1.28916 1.20372 0.83565 0.85936 0.71782 1.90718 1.18557 1.85255 1.49276 1.86546 1.40338 1.17329 1.83737 1.23134 0.98031 0.75775 1.00960 1.18979 0.92852 0.92181 0.96619 1.21380 0.93781 0.91132 1.52327 0.91593 1.25983 0.94944 1.04362 0.94128 1.70100 1.02737 1.33359 1.50508 0.85312 0.78424 0.77826 0.78669 1.19535 1.20424 1.18632 1.24365 0.97673 0.91841 0.94857 1.77175 0.97114 1.12726 1.25811 1.48820 1.03288 1.06516 1.53745 1.21073 1.03968 0.75750 0.94792 1.20039 0.95116 1.01727 0.96279 1.21295 0.98381 0.97270 0.95418 1.21456 0.98587 1.00408 0.94842 1.21578 0.93065 0.98019 1.00851 1.21500 1.00058 0.98467 0.94935 1.21442 0.97199 0.98673 0.95464 0.87474 0.87643 0.89353 0.92149 0.92250 0.97631 0.97548 0.92369 0.78060 0.84472 0.86137 0.85565 0.84520 0.84106 0.83863 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.77 9.34 71.24 0.67 -1.10 16 2 C 0.18 4.29 7.01 42.16 0.30 4.58 16 3 C -0.31 -9.89 6.13 -20.16 -0.12 -10.01 16 4 C 0.54 20.65 7.95 70.20 0.56 21.21 16 5 O -0.55 -22.03 14.63 19.77 0.29 -21.74 16 6 O -0.36 -15.74 10.07 -56.64 -0.57 -16.31 16 7 C 0.09 4.42 5.41 71.98 0.39 4.81 16 8 C 0.03 1.71 5.35 29.85 0.16 1.87 16 9 C -0.55 -31.68 9.11 25.60 0.23 -31.45 16 10 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 11 C 0.00 0.27 5.46 84.65 0.46 0.73 16 12 N -0.93 -56.49 13.29 21.45 0.28 -56.20 16 13 Si 0.97 44.19 29.54 68.60 2.03 46.22 16 14 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 15 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 16 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 17 C 0.10 2.95 11.87 85.66 1.02 3.97 16 18 N -0.31 -8.29 12.50 -56.25 -0.70 -8.99 16 19 N -0.35 -7.35 3.56 -336.68 -1.20 -8.55 16 20 C 0.16 2.04 6.15 85.63 0.53 2.57 16 21 C -0.13 -1.85 5.46 -19.87 -0.11 -1.96 16 22 C -0.11 -1.61 9.70 22.27 0.22 -1.40 16 23 C -0.14 -1.88 10.05 22.27 0.22 -1.66 16 24 C -0.12 -1.48 10.05 22.27 0.22 -1.25 16 25 C -0.13 -1.60 10.05 22.27 0.22 -1.38 16 26 C -0.11 -1.36 9.47 22.27 0.21 -1.15 16 27 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.11 1.03 5.25 -2.38 -0.01 1.02 16 29 H 0.09 1.98 6.51 -2.39 -0.02 1.97 16 30 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 31 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 35 H 0.20 5.49 8.06 -2.91 -0.02 5.47 16 36 H 0.14 0.83 7.56 -2.39 -0.02 0.81 16 37 H 0.12 1.26 8.08 -2.39 -0.02 1.24 16 38 H 0.13 1.82 8.06 -2.91 -0.02 1.80 16 39 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 40 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 41 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 42 H 0.14 1.11 5.92 -2.91 -0.02 1.10 16 Total: -1.00 -74.17 363.82 6.33 -67.84 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 1.03 Total: 9.35 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: 5.17 Total: -11.62 kcal Atomic # 7 Polarization: -72.12 SS G_CDS: -1.62 Total: -73.74 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -0.28 Total: -38.05 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -74.17 6.33 -67.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193337408.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.417 kcal (2) G-P(sol) polarization free energy of solvation -74.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds