Wall clock time and date at job start Tue Mar 31 2020 11:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30171 * 126.80214 * 2 1 4 4 O 1.20925 * 111.60718 * 180.02562 * 3 2 1 5 5 C 1.34042 * 111.56174 * 359.76469 * 4 3 2 6 6 C 1.50707 * 126.77501 * 180.28357 * 5 4 3 7 7 C 1.35449 * 106.44684 * 0.37710 * 5 4 3 8 8 C 1.50702 * 128.00365 * 179.91276 * 7 5 4 9 9 C 1.52996 * 109.47296 * 269.67707 * 8 7 5 10 10 C 1.50702 * 109.47455 * 180.02562 * 9 8 7 11 11 O 1.21280 * 119.99672 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00366 * 180.02562 * 10 9 8 13 13 C 1.37146 * 119.99898 * 354.95187 * 12 10 9 14 14 H 1.08000 * 119.99621 * 344.74351 * 13 12 10 15 15 C 1.38889 * 120.00031 * 164.73957 * 13 12 10 16 16 N 1.31418 * 120.00094 * 343.62416 * 15 13 12 17 17 Si 1.86802 * 120.00007 * 163.62287 * 15 13 12 18 18 H 1.48500 * 109.46876 * 90.00126 * 17 15 13 19 19 H 1.48494 * 109.47246 * 209.99888 * 17 15 13 20 20 H 1.48496 * 109.47129 * 330.00290 * 17 15 13 21 21 C 1.39784 * 120.00365 * 174.95322 * 12 10 9 22 22 C 1.38964 * 120.07889 * 101.20428 * 21 12 10 23 23 C 1.38082 * 119.92082 * 179.79106 * 22 21 12 24 24 C 1.38315 * 120.07783 * 0.46756 * 23 22 21 25 25 C 1.38306 * 120.15588 * 359.78612 * 24 23 22 26 26 C 1.38088 * 120.07910 * 359.97438 * 25 24 23 27 27 H 1.09000 * 109.46687 * 269.97859 * 1 2 3 28 28 H 1.09003 * 109.46739 * 29.97475 * 1 2 3 29 29 H 1.09000 * 109.47058 * 149.97298 * 1 2 3 30 30 H 1.09000 * 109.47221 * 270.11215 * 6 5 4 31 31 H 1.08997 * 109.47178 * 30.11392 * 6 5 4 32 32 H 1.08999 * 109.46397 * 150.10889 * 6 5 4 33 33 H 1.09003 * 109.46973 * 149.67979 * 8 7 5 34 34 H 1.09001 * 109.47455 * 29.68209 * 8 7 5 35 35 H 1.08998 * 109.47202 * 59.99889 * 9 8 7 36 36 H 1.09001 * 109.47278 * 300.00610 * 9 8 7 37 37 H 0.96998 * 120.00030 * 185.01570 * 16 15 13 38 38 H 1.07992 * 120.03637 * 0.02562 * 22 21 12 39 39 H 1.07994 * 119.96083 * 180.25593 * 23 22 21 40 40 H 1.07997 * 119.91916 * 179.76592 * 24 23 22 41 41 H 1.07996 * 119.95873 * 179.97438 * 25 24 23 42 42 H 1.07997 * 120.03751 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 -0.0005 5 6 3.6025 -0.6068 0.0042 6 6 4.9022 -1.3696 0.0111 7 6 2.3540 -1.1320 -0.0006 8 6 1.9591 -2.5864 -0.0001 9 6 1.8242 -3.0787 -1.4424 10 6 1.4287 -4.5329 -1.4420 11 8 1.2708 -5.1180 -0.3914 12 7 1.2514 -5.1835 -2.6089 13 6 1.3291 -4.4985 -3.7945 14 1 1.2847 -3.4195 -3.7986 15 6 1.4649 -5.1926 -4.9899 16 7 1.8387 -6.4524 -4.9794 17 14 1.1161 -4.3352 -6.6125 18 1 2.3640 -3.7110 -7.1207 19 1 0.6212 -5.3274 -7.6002 20 1 0.0860 -3.2857 -6.4064 21 6 0.9885 -6.5564 -2.6108 22 6 -0.3101 -7.0165 -2.7930 23 6 -0.5655 -8.3735 -2.7987 24 6 0.4678 -9.2741 -2.6137 25 6 1.7606 -8.8196 -2.4268 26 6 2.0241 -7.4641 -2.4249 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8903 -0.5135 29 1 -0.3633 -0.8897 -0.5143 30 1 5.2202 -1.5550 -1.0148 31 1 5.6637 -0.7852 0.5275 32 1 4.7627 -2.3202 0.5258 33 1 1.0055 -2.7038 0.5146 34 1 2.7232 -3.1702 0.5131 35 1 2.7777 -2.9613 -1.9571 36 1 1.0601 -2.4949 -1.9557 37 1 2.0040 -6.9162 -5.8152 38 1 -1.1178 -6.3137 -2.9338 39 1 -1.5738 -8.7319 -2.9443 40 1 0.2645 -10.3348 -2.6148 41 1 2.5649 -9.5256 -2.2823 42 1 3.0338 -7.1099 -2.2786 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194665838.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:57 Heat of formation + Delta-G solvation = 35.520256 kcal Electronic energy + Delta-G solvation = -25953.153998 eV Core-core repulsion = 22286.971598 eV Total energy + Delta-G solvation = -3666.182400 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -45.88813 -41.14652 -39.08738 -36.89831 -36.45679 -34.70219 -33.54613 -32.70862 -31.53836 -30.52886 -29.59181 -28.55336 -26.89416 -26.06198 -23.28564 -23.16701 -22.11439 -21.04417 -20.88763 -19.35181 -18.63805 -18.18318 -17.61319 -17.21787 -16.64970 -16.40381 -16.12442 -15.67486 -15.23160 -15.07251 -14.72362 -14.42600 -14.29241 -14.07946 -13.95845 -13.71575 -13.60840 -13.49630 -13.37887 -13.23343 -13.14671 -12.89583 -12.83165 -12.55594 -12.22758 -12.20736 -12.02937 -11.95093 -11.69068 -11.21742 -10.80337 -10.46613 -10.03158 -9.93549 -9.54349 -9.29191 -8.09053 -5.93244 0.50573 0.80037 0.85029 1.20963 1.38920 1.46597 1.55407 1.95836 2.20187 2.27509 2.91224 3.10681 3.25984 3.27969 3.56430 3.86327 4.04691 4.25027 4.25509 4.31044 4.38580 4.41860 4.42712 4.47306 4.63954 4.70034 4.71567 4.74559 4.81394 4.84343 4.92474 4.93870 5.11157 5.15003 5.16473 5.19019 5.37222 5.38923 5.45480 5.68742 5.81304 5.87096 6.04881 6.27604 6.61122 7.11559 7.30942 7.53710 7.96387 8.73393 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.013971 B = 0.004114 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.610098 B = 6804.306218 C = 7648.531107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.018 3.982 3 N -0.396 5.396 4 O 0.084 5.916 5 C -0.023 4.023 6 C -0.075 4.075 7 C -0.209 4.209 8 C -0.009 4.009 9 C -0.097 4.097 10 C 0.454 3.546 11 O -0.626 6.626 12 N -0.425 5.425 13 C -0.367 4.367 14 H 0.112 0.888 15 C 0.007 3.993 16 N -0.869 5.869 17 Si 0.979 3.021 18 H -0.271 1.271 19 H -0.286 1.286 20 H -0.264 1.264 21 C 0.213 3.787 22 C -0.151 4.151 23 C -0.121 4.121 24 C -0.142 4.142 25 C -0.121 4.121 26 C -0.093 4.093 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.269 0.731 38 H 0.098 0.902 39 H 0.138 0.862 40 H 0.146 0.854 41 H 0.135 0.865 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.691 4.431 4.752 6.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.140 4.140 3 N -0.105 5.105 4 O 0.023 5.977 5 C -0.086 4.086 6 C -0.132 4.132 7 C -0.213 4.213 8 C -0.047 4.047 9 C -0.137 4.137 10 C 0.246 3.754 11 O -0.514 6.514 12 N -0.141 5.141 13 C -0.492 4.492 14 H 0.129 0.871 15 C -0.199 4.199 16 N -0.504 5.504 17 Si 0.803 3.197 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.188 1.188 21 C 0.123 3.877 22 C -0.171 4.171 23 C -0.140 4.140 24 C -0.160 4.160 25 C -0.140 4.140 26 C -0.113 4.113 27 H 0.112 0.888 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.116 0.884 39 H 0.156 0.844 40 H 0.164 0.836 41 H 0.153 0.847 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.401 5.304 5.093 7.486 hybrid contribution -0.139 -0.327 -1.204 1.255 sum 1.262 4.976 3.890 6.441 Atomic orbital electron populations 1.20285 0.84599 1.04293 1.04327 1.23892 1.00078 0.88399 1.01667 1.73779 0.89801 1.24684 1.22271 1.84730 1.21357 1.23274 1.68389 1.24832 0.99356 0.83169 1.01281 1.20552 0.88752 0.98650 1.05263 1.21060 0.92243 0.97287 1.10738 1.19423 1.02661 0.87167 0.95445 1.21239 1.03269 0.91213 0.98000 1.20894 0.81391 0.90701 0.82443 1.90532 1.58190 1.70693 1.31964 1.41622 1.60721 1.05481 1.06286 1.19911 1.53926 0.92876 0.82517 0.87062 1.25988 0.95330 0.96261 1.02292 1.70080 1.41168 1.10924 1.28241 0.85137 0.78906 0.77964 0.77701 1.19688 1.21157 1.18802 1.17416 0.92584 0.83856 0.93855 1.21136 0.95546 0.96569 1.03836 1.21082 1.00056 0.91998 1.00834 1.21199 0.92395 1.00110 1.02319 1.21073 0.97809 0.94238 1.00887 1.20828 0.96755 0.93922 0.99781 0.88843 0.89859 0.89683 0.88355 0.87717 0.88425 0.90829 0.90265 0.89206 0.89647 0.92086 0.88402 0.84406 0.83614 0.84730 0.89576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.79 10.39 71.24 0.74 -1.05 16 2 C 0.02 0.53 7.33 43.58 0.32 0.85 16 3 N -0.40 -12.19 12.07 -49.55 -0.60 -12.79 16 4 O 0.08 2.40 11.20 71.61 0.80 3.21 16 5 C -0.02 -0.59 7.49 25.04 0.19 -0.40 16 6 C -0.08 -1.33 10.30 71.24 0.73 -0.60 16 7 C -0.21 -6.00 5.58 -19.74 -0.11 -6.11 16 8 C -0.01 -0.27 4.83 29.85 0.14 -0.13 16 9 C -0.10 -3.52 4.22 29.85 0.13 -3.40 16 10 C 0.45 20.97 7.58 87.66 0.66 21.63 16 11 O -0.63 -31.83 15.96 -3.03 -0.05 -31.88 16 12 N -0.43 -21.01 2.66 -458.89 -1.22 -22.23 16 13 C -0.37 -17.80 9.19 84.02 0.77 -17.03 16 14 H 0.11 5.02 6.46 -2.91 -0.02 5.00 16 15 C 0.01 0.31 5.24 84.91 0.44 0.76 16 16 N -0.87 -44.11 10.34 21.65 0.22 -43.89 16 17 Si 0.98 38.74 29.59 68.60 2.03 40.77 16 18 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 19 H -0.29 -11.46 7.11 99.48 0.71 -10.76 16 20 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 21 C 0.21 10.53 2.29 38.22 0.09 10.62 16 22 C -0.15 -6.95 9.95 22.41 0.22 -6.73 16 23 C -0.12 -4.66 10.04 22.25 0.22 -4.43 16 24 C -0.14 -5.08 10.04 22.30 0.22 -4.85 16 25 C -0.12 -4.77 10.04 22.25 0.22 -4.54 16 26 C -0.09 -4.39 8.66 22.41 0.19 -4.20 16 27 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 28 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.08 1.95 8.14 -2.39 -0.02 1.94 16 30 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.10 1.68 7.43 -2.39 -0.02 1.67 16 33 H 0.07 2.38 8.10 -2.39 -0.02 2.36 16 34 H 0.08 2.47 7.40 -2.39 -0.02 2.45 16 35 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 36 H 0.09 2.99 7.53 -2.39 -0.02 2.98 16 37 H 0.27 13.18 8.32 -92.71 -0.77 12.41 16 38 H 0.10 4.49 8.06 -2.91 -0.02 4.46 16 39 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 40 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 41 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 42 H 0.09 4.21 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -64.15 360.67 7.41 -56.74 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: 1.02 Total: 29.69 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: 5.20 Total: -19.61 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -1.59 Total: -78.91 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: 0.75 Total: -28.68 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -64.15 7.41 -56.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194665838.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.260 kcal (2) G-P(sol) polarization free energy of solvation -64.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds