Wall clock time and date at job start Tue Mar 31 2020 11:42:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 N 1.30171 * 126.80478 * 2 1
4 4 O 1.20927 * 111.60601 * 179.97438 * 3 2 1
5 5 C 1.34045 * 111.56576 * 359.76085 * 4 3 2
6 6 C 1.50696 * 126.77562 * 180.28187 * 5 4 3
7 7 C 1.35455 * 106.44698 * 0.38376 * 5 4 3
8 8 C 1.50694 * 128.00644 * 179.91287 * 7 5 4
9 9 H 1.09001 * 109.46981 * 179.67409 * 8 7 5
10 10 C 1.52997 * 109.47168 * 299.67210 * 8 7 5
11 11 C 1.50707 * 109.47336 * 59.67556 * 8 7 5
12 12 O 1.21284 * 119.99616 * 349.61131 * 11 8 7
13 13 N 1.34772 * 120.00085 * 169.88657 * 11 8 7
14 14 C 1.37148 * 119.99889 * 5.12084 * 13 11 8
15 15 H 1.07998 * 119.99789 * 338.27266 * 14 13 11
16 16 C 1.38885 * 119.99797 * 158.27191 * 14 13 11
17 17 N 1.31423 * 120.00225 * 350.08611 * 16 14 13
18 18 Si 1.86800 * 119.99848 * 170.07966 * 16 14 13
19 19 H 1.48505 * 109.47022 * 90.00210 * 18 16 14
20 20 H 1.48500 * 109.47237 * 210.00121 * 18 16 14
21 21 H 1.48498 * 109.47089 * 330.00486 * 18 16 14
22 22 C 1.39783 * 119.99962 * 185.11560 * 13 11 8
23 23 C 1.38968 * 120.07707 * 290.34418 * 22 13 11
24 24 C 1.38080 * 119.91723 * 179.79235 * 23 22 13
25 25 C 1.38302 * 120.08097 * 0.46152 * 24 23 22
26 26 C 1.38309 * 120.15696 * 359.79454 * 25 24 23
27 27 C 1.38084 * 120.07670 * 359.97438 * 26 25 24
28 28 H 1.08993 * 109.46876 * 270.02761 * 1 2 3
29 29 H 1.09000 * 109.46763 * 30.02587 * 1 2 3
30 30 H 1.09004 * 109.47228 * 150.02565 * 1 2 3
31 31 H 1.08998 * 109.47817 * 270.11469 * 6 5 4
32 32 H 1.09003 * 109.47075 * 30.11810 * 6 5 4
33 33 H 1.09003 * 109.47044 * 150.11455 * 6 5 4
34 34 H 1.09002 * 109.46870 * 185.01242 * 10 8 7
35 35 H 1.08999 * 109.47087 * 305.01657 * 10 8 7
36 36 H 1.09004 * 109.47211 * 65.01349 * 10 8 7
37 37 H 0.96998 * 120.00208 * 185.05366 * 17 16 14
38 38 H 1.07998 * 120.03697 * 0.02562 * 23 22 13
39 39 H 1.07999 * 119.95805 * 180.23503 * 24 23 22
40 40 H 1.08008 * 119.92436 * 179.76656 * 25 24 23
41 41 H 1.08002 * 119.96288 * 179.97438 * 26 25 24
42 42 H 1.07994 * 120.03693 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2868 1.0423 0.0000
4 8 3.4538 0.7252 0.0005
5 6 3.6025 -0.6069 0.0061
6 6 4.9021 -1.3697 0.0144
7 6 2.3539 -1.1322 0.0006
8 6 1.9590 -2.5865 0.0016
9 1 0.8721 -2.6678 0.0018
10 6 2.5212 -3.2685 -1.2473
11 6 2.5131 -3.2567 1.2325
12 8 3.3159 -2.6742 1.9306
13 7 2.1209 -4.5052 1.5543
14 6 1.2999 -5.2056 0.7080
15 1 0.6910 -4.6792 -0.0121
16 6 1.2515 -6.5919 0.7769
17 7 2.1261 -7.2444 1.5094
18 14 -0.0569 -7.5291 -0.1713
19 1 0.4559 -7.8623 -1.5246
20 1 -0.3918 -8.7813 0.5532
21 1 -1.2748 -6.6887 -0.2966
22 6 2.5509 -5.0863 2.7507
23 6 3.8830 -5.4490 2.9095
24 6 4.3051 -6.0188 4.0942
25 6 3.4021 -6.2376 5.1186
26 6 2.0745 -5.8828 4.9621
27 6 1.6463 -5.3081 3.7818
28 1 -0.3633 0.0005 1.0276
29 1 -0.3633 0.8898 -0.5142
30 1 -0.3634 -0.8902 -0.5134
31 1 5.2209 -1.5557 -1.0112
32 1 5.6633 -0.7850 0.5310
33 1 4.7623 -2.3201 0.5294
34 1 2.1621 -4.2966 -1.2925
35 1 2.1917 -2.7290 -2.1353
36 1 3.6103 -3.2656 -1.2037
37 1 2.1392 -8.2142 1.5002
38 1 4.5880 -5.2818 2.1085
39 1 5.3410 -6.2974 4.2197
40 1 3.7342 -6.6870 6.0429
41 1 1.3719 -6.0555 5.7640
42 1 0.6094 -5.0317 3.6602
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000194761522.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:42:49
Heat of formation + Delta-G solvation = 45.053841 kcal
Electronic energy + Delta-G solvation = -27063.036599 eV
Core-core repulsion = 23397.267606 eV
Total energy + Delta-G solvation = -3665.768993 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.142 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-45.82765 -41.27985 -39.19177 -36.74211 -36.33509 -34.70715 -33.53671 -32.59015
-31.51229 -30.22852 -29.52478 -28.60449 -26.90505 -25.54305 -23.99615 -23.16588
-22.22434 -21.30688 -20.56166 -19.36757 -18.61373 -18.02006 -17.62533 -17.19863
-16.57094 -16.16148 -16.13007 -15.55011 -15.27197 -14.84759 -14.57111 -14.36651
-14.22229 -14.07713 -14.04062 -13.85290 -13.55317 -13.37140 -13.25186 -13.18110
-13.09771 -12.85894 -12.74394 -12.49408 -12.22750 -12.11151 -11.93337 -11.89018
-11.75136 -11.12933 -10.80586 -10.32386 -10.01115 -9.90019 -9.50291 -9.16500
-8.04148 -5.91027 0.56582 0.82318 0.86668 1.26081 1.44448 1.52015
1.60028 1.98793 2.20889 2.33468 2.92805 3.13132 3.28080 3.35461
3.63013 3.88660 4.03052 4.27473 4.32095 4.35195 4.39552 4.44145
4.47715 4.58685 4.65881 4.67553 4.71966 4.77454 4.82603 4.94116
4.98796 5.03731 5.14158 5.18206 5.25743 5.28256 5.40390 5.43766
5.55207 5.71999 5.83571 5.90852 6.08471 6.31065 6.64471 7.16052
7.32599 7.56724 7.98274 8.80851
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.013174 B = 0.005543 C = 0.004554
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2124.844603 B = 5050.060160 C = 6146.436422
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 C 0.021 3.979
3 N -0.398 5.398
4 O 0.075 5.925
5 C 0.000 4.000
6 C -0.074 4.074
7 C -0.198 4.198
8 C -0.002 4.002
9 H 0.103 0.897
10 C -0.134 4.134
11 C 0.467 3.533
12 O -0.608 6.608
13 N -0.419 5.419
14 C -0.358 4.358
15 H 0.117 0.883
16 C 0.007 3.993
17 N -0.874 5.874
18 Si 0.977 3.023
19 H -0.271 1.271
20 H -0.292 1.292
21 H -0.258 1.258
22 C 0.219 3.781
23 C -0.103 4.103
24 C -0.121 4.121
25 C -0.148 4.148
26 C -0.119 4.119
27 C -0.147 4.147
28 H 0.082 0.918
29 H 0.089 0.911
30 H 0.097 0.903
31 H 0.104 0.896
32 H 0.088 0.912
33 H 0.086 0.914
34 H 0.079 0.921
35 H 0.076 0.924
36 H 0.051 0.949
37 H 0.267 0.733
38 H 0.085 0.915
39 H 0.132 0.868
40 H 0.142 0.858
41 H 0.135 0.865
42 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.738 3.623 -2.713 4.586
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.137 4.137
3 N -0.109 5.109
4 O 0.015 5.985
5 C -0.063 4.063
6 C -0.131 4.131
7 C -0.202 4.202
8 C -0.024 4.024
9 H 0.121 0.879
10 C -0.191 4.191
11 C 0.258 3.742
12 O -0.495 6.495
13 N -0.134 5.134
14 C -0.484 4.484
15 H 0.134 0.866
16 C -0.198 4.198
17 N -0.510 5.510
18 Si 0.802 3.198
19 H -0.197 1.197
20 H -0.218 1.218
21 H -0.182 1.182
22 C 0.128 3.872
23 C -0.123 4.123
24 C -0.140 4.140
25 C -0.166 4.166
26 C -0.138 4.138
27 C -0.167 4.167
28 H 0.100 0.900
29 H 0.108 0.892
30 H 0.115 0.885
31 H 0.122 0.878
32 H 0.107 0.893
33 H 0.105 0.895
34 H 0.098 0.902
35 H 0.095 0.905
36 H 0.070 0.930
37 H 0.077 0.923
38 H 0.104 0.896
39 H 0.150 0.850
40 H 0.160 0.840
41 H 0.153 0.847
42 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges -0.537 5.015 -2.292 5.540
hybrid contribution -0.600 -1.546 -0.340 1.693
sum -1.137 3.469 -2.632 4.500
Atomic orbital electron populations
1.20307 0.83950 1.04983 1.03984 1.23918 1.00244 0.88129 1.01454
1.73728 0.89630 1.24626 1.22913 1.84687 1.21645 1.23206 1.68945
1.24509 0.99346 0.82737 0.99709 1.20577 0.89123 0.99134 1.04283
1.20639 0.92248 0.96356 1.10951 1.19140 1.01700 0.87163 0.94354
0.87861 1.21761 1.00928 1.01835 0.94593 1.20663 0.83444 0.82459
0.87634 1.90522 1.37283 1.66355 1.55297 1.41471 1.43402 1.12652
1.15921 1.19935 1.21895 0.89502 1.17035 0.86593 1.26000 0.98580
0.97671 0.97547 1.70011 1.33989 1.08434 1.38562 0.85148 0.79045
0.77671 0.77971 1.19695 1.21818 1.18224 1.17409 0.92319 0.92122
0.85360 1.20783 0.95066 0.99148 0.97255 1.21051 1.00091 0.99588
0.93242 1.21145 0.93186 1.02607 0.99638 1.21051 0.96724 0.99233
0.96747 1.21035 0.98495 1.02977 0.94217 0.89963 0.89185 0.88476
0.87787 0.89319 0.89534 0.90243 0.90461 0.92955 0.92272 0.89641
0.85044 0.83985 0.84672 0.88251
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.86 10.26 71.24 0.73 -1.13 16
2 C 0.02 0.72 7.33 43.58 0.32 1.04 16
3 N -0.40 -14.25 12.07 -49.54 -0.60 -14.84 16
4 O 0.07 2.65 11.20 71.58 0.80 3.45 16
5 C 0.00 0.01 6.84 25.04 0.17 0.18 16
6 C -0.07 -2.22 8.73 71.23 0.62 -1.60 16
7 C -0.20 -7.01 4.66 -19.73 -0.09 -7.10 16
8 C 0.00 -0.07 2.16 -12.29 -0.03 -0.10 16
9 H 0.10 3.51 6.51 -2.39 -0.02 3.49 16
10 C -0.13 -4.25 8.70 71.98 0.63 -3.63 16
11 C 0.47 20.82 6.33 87.66 0.56 21.37 16
12 O -0.61 -29.78 12.80 -3.04 -0.04 -29.82 16
13 N -0.42 -19.75 2.68 -458.89 -1.23 -20.98 16
14 C -0.36 -16.26 7.53 84.02 0.63 -15.63 16
15 H 0.12 4.79 5.69 -2.91 -0.02 4.77 16
16 C 0.01 0.31 5.23 84.91 0.44 0.76 16
17 N -0.87 -43.38 10.53 21.65 0.23 -43.15 16
18 Si 0.98 36.90 29.57 68.60 2.03 38.93 16
19 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16
20 H -0.29 -11.45 7.11 99.48 0.71 -10.75 16
21 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16
22 C 0.22 10.53 2.53 38.22 0.10 10.63 16
23 C -0.10 -4.77 8.66 22.41 0.19 -4.58 16
24 C -0.12 -4.76 10.04 22.25 0.22 -4.54 16
25 C -0.15 -5.30 10.04 22.30 0.22 -5.07 16
26 C -0.12 -4.55 10.04 22.25 0.22 -4.33 16
27 C -0.15 -6.64 9.51 22.41 0.21 -6.42 16
28 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16
29 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16
30 H 0.10 2.08 7.55 -2.39 -0.02 2.07 16
31 H 0.10 2.47 8.11 -2.39 -0.02 2.45 16
32 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16
33 H 0.09 3.15 5.14 -2.39 -0.01 3.14 16
34 H 0.08 2.72 5.92 -2.39 -0.01 2.70 16
35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16
36 H 0.05 1.66 6.71 -2.39 -0.02 1.65 16
37 H 0.27 12.93 8.32 -92.71 -0.77 12.16 16
38 H 0.09 4.13 8.06 -2.91 -0.02 4.11 16
39 H 0.13 4.32 8.06 -2.91 -0.02 4.29 16
40 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16
41 H 0.14 4.22 8.06 -2.91 -0.02 4.19 16
42 H 0.10 4.45 8.06 -2.91 -0.02 4.43 16
Total: -1.00 -60.95 345.54 7.39 -53.56
By element:
Atomic # 1 Polarization: 31.96 SS G_CDS: 1.04 Total: 33.00 kcal
Atomic # 6 Polarization: -25.31 SS G_CDS: 5.16 Total: -20.15 kcal
Atomic # 7 Polarization: -77.38 SS G_CDS: -1.60 Total: -78.98 kcal
Atomic # 8 Polarization: -27.13 SS G_CDS: 0.76 Total: -26.36 kcal
Atomic # 14 Polarization: 36.90 SS G_CDS: 2.03 Total: 38.93 kcal
Total: -60.95 7.39 -53.56 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000194761522.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 98.614 kcal
(2) G-P(sol) polarization free energy of solvation -60.952 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.662 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.392 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.560 kcal
(6) G-S(sol) free energy of system = (1) + (5) 45.054 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds