Wall clock time and date at job start Tue Mar 31 2020 11:42:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 N 1.30182 * 126.80292 * 2 1
4 4 O 1.20918 * 111.60733 * 180.25020 * 3 2 1
5 5 C 1.34042 * 111.56713 * 359.75054 * 4 3 2
6 6 C 1.50701 * 126.77875 * 179.97438 * 5 4 3
7 7 C 1.35453 * 106.44632 * 359.97438 * 5 4 3
8 8 C 1.50703 * 128.00829 * 179.97438 * 7 5 4
9 9 H 1.09003 * 109.46629 * 0.87941 * 8 7 5
10 10 C 1.53001 * 109.46719 * 240.88023 * 8 7 5
11 11 C 1.50696 * 109.47263 * 120.87782 * 8 7 5
12 12 O 1.21286 * 119.99990 * 25.61736 * 11 8 7
13 13 N 1.34772 * 120.00216 * 205.62200 * 11 8 7
14 14 C 1.37142 * 119.99708 * 4.53018 * 13 11 8
15 15 H 1.08002 * 120.00382 * 330.90294 * 14 13 11
16 16 C 1.38894 * 119.99824 * 150.62888 * 14 13 11
17 17 N 1.31425 * 119.99937 * 155.97588 * 16 14 13
18 18 Si 1.86796 * 119.99834 * 335.97146 * 16 14 13
19 19 H 1.48507 * 109.47078 * 85.82020 * 18 16 14
20 20 H 1.48495 * 109.47435 * 205.82039 * 18 16 14
21 21 H 1.48498 * 109.47496 * 325.82355 * 18 16 14
22 22 C 1.39786 * 120.00356 * 184.53711 * 13 11 8
23 23 C 1.38958 * 120.07585 * 301.29120 * 22 13 11
24 24 C 1.38091 * 119.92265 * 179.74518 * 23 22 13
25 25 C 1.38308 * 120.07524 * 0.52494 * 24 23 22
26 26 C 1.38313 * 120.15625 * 359.73088 * 25 24 23
27 27 C 1.38082 * 120.07733 * 0.02562 * 26 25 24
28 28 H 1.09001 * 109.46936 * 275.88197 * 1 2 3
29 29 H 1.08997 * 109.47630 * 35.88816 * 1 2 3
30 30 H 1.09002 * 109.47041 * 155.89126 * 1 2 3
31 31 H 1.08995 * 109.47079 * 270.00183 * 6 5 4
32 32 H 1.09003 * 109.46559 * 30.00048 * 6 5 4
33 33 H 1.08995 * 109.47176 * 149.99880 * 6 5 4
34 34 H 1.08999 * 109.47325 * 294.11059 * 10 8 7
35 35 H 1.08989 * 109.47319 * 54.11872 * 10 8 7
36 36 H 1.09006 * 109.46521 * 174.11839 * 10 8 7
37 37 H 0.97000 * 119.99311 * 179.97438 * 17 16 14
38 38 H 1.07997 * 120.03889 * 359.97135 * 23 22 13
39 39 H 1.07993 * 119.95821 * 180.25450 * 24 23 22
40 40 H 1.07996 * 119.92148 * 179.69950 * 25 24 23
41 41 H 1.07998 * 119.96022 * 180.02562 * 26 25 24
42 42 H 1.08002 * 120.03897 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.2868 1.0424 0.0000
4 8 3.4537 0.7254 -0.0049
5 6 3.6025 -0.6067 -0.0035
6 6 4.9022 -1.3695 -0.0088
7 6 2.3540 -1.1320 0.0037
8 6 1.9591 -2.5864 0.0076
9 1 2.8557 -3.2062 0.0194
10 6 1.1414 -2.8961 -1.2480
11 6 1.1302 -2.8786 1.2317
12 8 0.4983 -1.9899 1.7626
13 7 1.0912 -4.1276 1.7367
14 6 1.8771 -5.1116 1.1937
15 1 2.1506 -5.0698 0.1497
16 6 2.3263 -6.1588 1.9879
17 7 2.6534 -7.3069 1.4381
18 14 2.4654 -5.9355 3.8372
19 1 1.1547 -6.2279 4.4711
20 1 3.4924 -6.8650 4.3723
21 1 2.8596 -4.5358 4.1386
22 6 0.2494 -4.4201 2.8137
23 6 0.3881 -3.7317 4.0128
24 6 -0.4486 -4.0195 5.0730
25 6 -1.4166 -4.9992 4.9459
26 6 -1.5539 -5.6901 3.7556
27 6 -0.7240 -5.4040 2.6897
28 1 -0.3633 0.1053 1.0223
29 1 -0.3634 0.8325 -0.6024
30 1 -0.3633 -0.9380 -0.4198
31 1 5.2103 -1.5550 -1.0377
32 1 5.6686 -0.7849 0.5002
33 1 4.7677 -2.3200 0.5072
34 1 0.1962 -2.3547 -1.2087
35 1 1.7006 -2.5873 -2.1311
36 1 0.9448 -3.9671 -1.2984
37 1 2.9674 -8.0381 1.9928
38 1 1.1468 -2.9699 4.1143
39 1 -0.3441 -3.4820 6.0038
40 1 -2.0664 -5.2257 5.7783
41 1 -2.3111 -6.4542 3.6597
42 1 -0.8315 -5.9441 1.7606
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000194761536.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:42:57
Heat of formation + Delta-G solvation = 62.841697 kcal
Electronic energy + Delta-G solvation = -27177.126880 eV
Core-core repulsion = 23512.129227 eV
Total energy + Delta-G solvation = -3664.997654 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.142 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-44.51937 -39.98533 -37.98740 -35.41656 -34.77189 -33.37048 -32.19548 -31.55512
-30.32931 -29.04551 -28.30276 -27.29524 -25.20237 -24.35295 -22.68876 -21.96487
-20.93865 -19.74655 -18.97393 -18.05301 -17.29946 -16.63628 -16.08618 -15.93011
-15.40649 -14.82868 -14.28153 -14.24753 -13.79596 -13.60571 -13.41627 -13.14697
-12.96552 -12.85568 -12.77978 -12.66752 -12.58064 -12.38530 -12.15225 -12.00322
-11.58249 -11.40452 -11.15093 -11.09742 -10.89099 -10.72842 -10.62148 -10.27815
-10.05135 -9.46779 -9.35064 -8.98907 -8.64167 -8.46935 -8.29089 -7.66957
-6.66175 -4.21670 1.80207 1.89687 2.00140 2.63621 3.10915 3.24706
3.30123 3.43924 3.53972 4.08580 4.12900 4.37797 4.63030 4.84765
4.91219 5.22539 5.24329 5.44533 5.49162 5.52505 5.56124 5.62685
5.64297 5.68741 5.79148 5.88412 6.02900 6.03222 6.06036 6.15446
6.16650 6.22049 6.30709 6.40570 6.43402 6.46532 6.60234 6.76604
6.90830 7.05793 7.11943 7.23052 7.56918 7.83757 8.12307 8.67790
8.72916 9.13602 9.43968 10.41527
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.015165 B = 0.005658 C = 0.004902
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1845.894666 B = 4947.301781 C = 5710.099485
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 C 0.056 3.944
3 N -0.384 5.384
4 O 0.086 5.914
5 C -0.040 4.040
6 C -0.073 4.073
7 C -0.171 4.171
8 C -0.020 4.020
9 H 0.113 0.887
10 C -0.136 4.136
11 C 0.490 3.510
12 O -0.568 6.568
13 N -0.419 5.419
14 C -0.361 4.361
15 H 0.116 0.884
16 C 0.082 3.918
17 N -0.846 5.846
18 Si 0.855 3.145
19 H -0.253 1.253
20 H -0.291 1.291
21 H -0.263 1.263
22 C 0.161 3.839
23 C -0.126 4.126
24 C -0.116 4.116
25 C -0.144 4.144
26 C -0.114 4.114
27 C -0.114 4.114
28 H 0.087 0.913
29 H 0.058 0.942
30 H 0.079 0.921
31 H 0.085 0.915
32 H 0.079 0.921
33 H 0.095 0.905
34 H 0.058 0.942
35 H 0.059 0.941
36 H 0.074 0.926
37 H 0.278 0.722
38 H 0.117 0.883
39 H 0.115 0.885
40 H 0.113 0.887
41 H 0.117 0.883
42 H 0.128 0.872
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.917 4.832 -1.307 5.089
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C -0.102 4.102
3 N -0.093 5.093
4 O 0.024 5.976
5 C -0.103 4.103
6 C -0.131 4.131
7 C -0.175 4.175
8 C -0.041 4.041
9 H 0.130 0.870
10 C -0.194 4.194
11 C 0.280 3.720
12 O -0.450 6.450
13 N -0.134 5.134
14 C -0.485 4.485
15 H 0.133 0.867
16 C -0.128 4.128
17 N -0.479 5.479
18 Si 0.680 3.320
19 H -0.178 1.178
20 H -0.218 1.218
21 H -0.188 1.188
22 C 0.068 3.932
23 C -0.146 4.146
24 C -0.135 4.135
25 C -0.163 4.163
26 C -0.133 4.133
27 C -0.134 4.134
28 H 0.105 0.895
29 H 0.077 0.923
30 H 0.098 0.902
31 H 0.104 0.896
32 H 0.098 0.902
33 H 0.114 0.886
34 H 0.077 0.923
35 H 0.078 0.922
36 H 0.093 0.907
37 H 0.088 0.912
38 H 0.135 0.865
39 H 0.133 0.867
40 H 0.131 0.869
41 H 0.135 0.865
42 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges -1.322 6.387 -1.085 6.612
hybrid contribution 0.268 -1.032 1.050 1.497
sum -1.054 5.355 -0.034 5.458
Atomic orbital electron populations
1.20171 0.86069 1.02197 1.03585 1.23326 0.98906 0.87978 1.00022
1.73748 0.89304 1.24100 1.22180 1.84732 1.21793 1.22350 1.68759
1.24165 0.98118 0.83896 1.04118 1.20341 0.89905 0.98974 1.03833
1.20612 0.91457 0.96731 1.08692 1.19345 1.00764 0.89420 0.94609
0.86958 1.21720 0.99584 1.02914 0.95165 1.20269 0.83601 0.81485
0.86626 1.90582 1.47087 1.44589 1.62693 1.41503 1.35017 1.08739
1.28165 1.19143 1.29739 1.02455 0.97195 0.86662 1.25162 0.94557
0.94214 0.98842 1.69790 1.39363 1.01190 1.37524 0.87192 0.79748
0.79111 0.85919 1.17759 1.21808 1.18761 1.17711 0.91293 0.95843
0.88312 1.21144 1.00199 1.00979 0.92262 1.20850 0.96138 0.98331
0.98148 1.20927 0.99658 0.97945 0.97742 1.20898 0.99376 0.99713
0.93303 1.21149 0.93907 0.98869 0.99496 0.89465 0.92310 0.90212
0.89627 0.90237 0.88603 0.92330 0.92203 0.90669 0.91185 0.86458
0.86708 0.86868 0.86481 0.85422
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -1.04 8.71 36.00 0.31 -0.73 16
2 C 0.06 1.03 6.75 -82.10 -0.55 0.48 16
3 N -0.38 -7.12 12.07 33.42 0.40 -6.72 16
4 O 0.09 1.47 11.20 17.17 0.19 1.66 16
5 C -0.04 -0.63 7.49 -35.30 -0.26 -0.89 16
6 C -0.07 -0.86 10.17 36.01 0.37 -0.49 16
7 C -0.17 -3.04 4.74 -104.42 -0.49 -3.53 16
8 C -0.02 -0.36 2.17 -92.92 -0.20 -0.56 16
9 H 0.11 2.02 5.71 -51.93 -0.30 1.72 16
10 C -0.14 -2.16 8.94 37.16 0.33 -1.83 16
11 C 0.49 10.54 6.58 -10.99 -0.07 10.46 16
12 O -0.57 -13.03 12.37 5.55 0.07 -12.96 16
13 N -0.42 -9.51 2.46 -58.98 -0.15 -9.66 16
14 C -0.36 -8.57 8.72 -14.93 -0.13 -8.70 16
15 H 0.12 2.73 6.08 -52.49 -0.32 2.41 16
16 C 0.08 2.04 5.11 -17.48 -0.09 1.95 16
17 N -0.85 -21.82 13.96 55.49 0.77 -21.05 16
18 Si 0.85 20.00 23.79 -169.99 -4.04 15.96 16
19 H -0.25 -5.89 5.89 56.52 0.33 -5.56 16
20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
21 H -0.26 -6.28 6.66 56.52 0.38 -5.90 16
22 C 0.16 3.60 2.47 -83.70 -0.21 3.39 16
23 C -0.13 -2.70 5.85 -39.37 -0.23 -2.93 16
24 C -0.12 -2.14 9.72 -39.61 -0.39 -2.53 16
25 C -0.14 -2.47 10.00 -39.53 -0.40 -2.86 16
26 C -0.11 -2.04 9.87 -39.61 -0.39 -2.43 16
27 C -0.11 -2.37 8.49 -39.37 -0.33 -2.70 16
28 H 0.09 1.56 7.45 -51.93 -0.39 1.17 16
29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16
30 H 0.08 1.29 5.36 -51.93 -0.28 1.02 16
31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16
32 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16
33 H 0.10 1.19 7.38 -51.93 -0.38 0.80 16
34 H 0.06 0.91 5.63 -51.93 -0.29 0.62 16
35 H 0.06 0.82 8.14 -51.94 -0.42 0.40 16
36 H 0.07 1.23 7.43 -51.93 -0.39 0.84 16
37 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16
38 H 0.12 2.62 7.85 -52.49 -0.41 2.21 16
39 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16
40 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16
41 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16
42 H 0.13 2.63 8.06 -52.49 -0.42 2.21 16
LS Contribution 337.28 15.07 5.08 5.08
Total: -1.00 -28.86 337.28 -5.77 -34.63
By element:
Atomic # 1 Polarization: 12.32 SS G_CDS: -5.37 Total: 6.96 kcal
Atomic # 6 Polarization: -11.16 SS G_CDS: -2.74 Total: -13.90 kcal
Atomic # 7 Polarization: -38.46 SS G_CDS: 1.03 Total: -37.43 kcal
Atomic # 8 Polarization: -11.56 SS G_CDS: 0.26 Total: -11.30 kcal
Atomic # 14 Polarization: 20.00 SS G_CDS: -4.04 Total: 15.96 kcal
Total LS contribution 5.08 Total: 5.08 kcal
Total: -28.86 -5.77 -34.63 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000194761536.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 97.473 kcal
(2) G-P(sol) polarization free energy of solvation -28.860 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.613 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.771 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.631 kcal
(6) G-S(sol) free energy of system = (1) + (5) 62.842 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds