Wall clock time and date at job start Tue Mar 31 2020 11:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30182 * 126.80292 * 2 1 4 4 O 1.20918 * 111.60733 * 180.25020 * 3 2 1 5 5 C 1.34042 * 111.56713 * 359.75054 * 4 3 2 6 6 C 1.50701 * 126.77875 * 179.97438 * 5 4 3 7 7 C 1.35453 * 106.44632 * 359.97438 * 5 4 3 8 8 C 1.50703 * 128.00829 * 179.97438 * 7 5 4 9 9 H 1.09003 * 109.46629 * 0.87941 * 8 7 5 10 10 C 1.53001 * 109.46719 * 240.88023 * 8 7 5 11 11 C 1.50696 * 109.47263 * 120.87782 * 8 7 5 12 12 O 1.21286 * 119.99990 * 25.61736 * 11 8 7 13 13 N 1.34772 * 120.00216 * 205.62200 * 11 8 7 14 14 C 1.37142 * 119.99708 * 4.53018 * 13 11 8 15 15 H 1.08002 * 120.00382 * 330.90294 * 14 13 11 16 16 C 1.38894 * 119.99824 * 150.62888 * 14 13 11 17 17 N 1.31425 * 119.99937 * 155.97588 * 16 14 13 18 18 Si 1.86796 * 119.99834 * 335.97146 * 16 14 13 19 19 H 1.48507 * 109.47078 * 85.82020 * 18 16 14 20 20 H 1.48495 * 109.47435 * 205.82039 * 18 16 14 21 21 H 1.48498 * 109.47496 * 325.82355 * 18 16 14 22 22 C 1.39786 * 120.00356 * 184.53711 * 13 11 8 23 23 C 1.38958 * 120.07585 * 301.29120 * 22 13 11 24 24 C 1.38091 * 119.92265 * 179.74518 * 23 22 13 25 25 C 1.38308 * 120.07524 * 0.52494 * 24 23 22 26 26 C 1.38313 * 120.15625 * 359.73088 * 25 24 23 27 27 C 1.38082 * 120.07733 * 0.02562 * 26 25 24 28 28 H 1.09001 * 109.46936 * 275.88197 * 1 2 3 29 29 H 1.08997 * 109.47630 * 35.88816 * 1 2 3 30 30 H 1.09002 * 109.47041 * 155.89126 * 1 2 3 31 31 H 1.08995 * 109.47079 * 270.00183 * 6 5 4 32 32 H 1.09003 * 109.46559 * 30.00048 * 6 5 4 33 33 H 1.08995 * 109.47176 * 149.99880 * 6 5 4 34 34 H 1.08999 * 109.47325 * 294.11059 * 10 8 7 35 35 H 1.08989 * 109.47319 * 54.11872 * 10 8 7 36 36 H 1.09006 * 109.46521 * 174.11839 * 10 8 7 37 37 H 0.97000 * 119.99311 * 179.97438 * 17 16 14 38 38 H 1.07997 * 120.03889 * 359.97135 * 23 22 13 39 39 H 1.07993 * 119.95821 * 180.25450 * 24 23 22 40 40 H 1.07996 * 119.92148 * 179.69950 * 25 24 23 41 41 H 1.07998 * 119.96022 * 180.02562 * 26 25 24 42 42 H 1.08002 * 120.03897 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0049 5 6 3.6025 -0.6067 -0.0035 6 6 4.9022 -1.3695 -0.0088 7 6 2.3540 -1.1320 0.0037 8 6 1.9591 -2.5864 0.0076 9 1 2.8557 -3.2062 0.0194 10 6 1.1414 -2.8961 -1.2480 11 6 1.1302 -2.8786 1.2317 12 8 0.4983 -1.9899 1.7626 13 7 1.0912 -4.1276 1.7367 14 6 1.8771 -5.1116 1.1937 15 1 2.1506 -5.0698 0.1497 16 6 2.3263 -6.1588 1.9879 17 7 2.6534 -7.3069 1.4381 18 14 2.4654 -5.9355 3.8372 19 1 1.1547 -6.2279 4.4711 20 1 3.4924 -6.8650 4.3723 21 1 2.8596 -4.5358 4.1386 22 6 0.2494 -4.4201 2.8137 23 6 0.3881 -3.7317 4.0128 24 6 -0.4486 -4.0195 5.0730 25 6 -1.4166 -4.9992 4.9459 26 6 -1.5539 -5.6901 3.7556 27 6 -0.7240 -5.4040 2.6897 28 1 -0.3633 0.1053 1.0223 29 1 -0.3634 0.8325 -0.6024 30 1 -0.3633 -0.9380 -0.4198 31 1 5.2103 -1.5550 -1.0377 32 1 5.6686 -0.7849 0.5002 33 1 4.7677 -2.3200 0.5072 34 1 0.1962 -2.3547 -1.2087 35 1 1.7006 -2.5873 -2.1311 36 1 0.9448 -3.9671 -1.2984 37 1 2.9674 -8.0381 1.9928 38 1 1.1468 -2.9699 4.1143 39 1 -0.3441 -3.4820 6.0038 40 1 -2.0664 -5.2257 5.7783 41 1 -2.3111 -6.4542 3.6597 42 1 -0.8315 -5.9441 1.7606 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194761536.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:57 Heat of formation + Delta-G solvation = 62.841697 kcal Electronic energy + Delta-G solvation = -27177.126880 eV Core-core repulsion = 23512.129227 eV Total energy + Delta-G solvation = -3664.997654 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.51937 -39.98533 -37.98740 -35.41656 -34.77189 -33.37048 -32.19548 -31.55512 -30.32931 -29.04551 -28.30276 -27.29524 -25.20237 -24.35295 -22.68876 -21.96487 -20.93865 -19.74655 -18.97393 -18.05301 -17.29946 -16.63628 -16.08618 -15.93011 -15.40649 -14.82868 -14.28153 -14.24753 -13.79596 -13.60571 -13.41627 -13.14697 -12.96552 -12.85568 -12.77978 -12.66752 -12.58064 -12.38530 -12.15225 -12.00322 -11.58249 -11.40452 -11.15093 -11.09742 -10.89099 -10.72842 -10.62148 -10.27815 -10.05135 -9.46779 -9.35064 -8.98907 -8.64167 -8.46935 -8.29089 -7.66957 -6.66175 -4.21670 1.80207 1.89687 2.00140 2.63621 3.10915 3.24706 3.30123 3.43924 3.53972 4.08580 4.12900 4.37797 4.63030 4.84765 4.91219 5.22539 5.24329 5.44533 5.49162 5.52505 5.56124 5.62685 5.64297 5.68741 5.79148 5.88412 6.02900 6.03222 6.06036 6.15446 6.16650 6.22049 6.30709 6.40570 6.43402 6.46532 6.60234 6.76604 6.90830 7.05793 7.11943 7.23052 7.56918 7.83757 8.12307 8.67790 8.72916 9.13602 9.43968 10.41527 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.015165 B = 0.005658 C = 0.004902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.894666 B = 4947.301781 C = 5710.099485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.056 3.944 3 N -0.384 5.384 4 O 0.086 5.914 5 C -0.040 4.040 6 C -0.073 4.073 7 C -0.171 4.171 8 C -0.020 4.020 9 H 0.113 0.887 10 C -0.136 4.136 11 C 0.490 3.510 12 O -0.568 6.568 13 N -0.419 5.419 14 C -0.361 4.361 15 H 0.116 0.884 16 C 0.082 3.918 17 N -0.846 5.846 18 Si 0.855 3.145 19 H -0.253 1.253 20 H -0.291 1.291 21 H -0.263 1.263 22 C 0.161 3.839 23 C -0.126 4.126 24 C -0.116 4.116 25 C -0.144 4.144 26 C -0.114 4.114 27 C -0.114 4.114 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.278 0.722 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.917 4.832 -1.307 5.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.102 4.102 3 N -0.093 5.093 4 O 0.024 5.976 5 C -0.103 4.103 6 C -0.131 4.131 7 C -0.175 4.175 8 C -0.041 4.041 9 H 0.130 0.870 10 C -0.194 4.194 11 C 0.280 3.720 12 O -0.450 6.450 13 N -0.134 5.134 14 C -0.485 4.485 15 H 0.133 0.867 16 C -0.128 4.128 17 N -0.479 5.479 18 Si 0.680 3.320 19 H -0.178 1.178 20 H -0.218 1.218 21 H -0.188 1.188 22 C 0.068 3.932 23 C -0.146 4.146 24 C -0.135 4.135 25 C -0.163 4.163 26 C -0.133 4.133 27 C -0.134 4.134 28 H 0.105 0.895 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.135 0.865 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.322 6.387 -1.085 6.612 hybrid contribution 0.268 -1.032 1.050 1.497 sum -1.054 5.355 -0.034 5.458 Atomic orbital electron populations 1.20171 0.86069 1.02197 1.03585 1.23326 0.98906 0.87978 1.00022 1.73748 0.89304 1.24100 1.22180 1.84732 1.21793 1.22350 1.68759 1.24165 0.98118 0.83896 1.04118 1.20341 0.89905 0.98974 1.03833 1.20612 0.91457 0.96731 1.08692 1.19345 1.00764 0.89420 0.94609 0.86958 1.21720 0.99584 1.02914 0.95165 1.20269 0.83601 0.81485 0.86626 1.90582 1.47087 1.44589 1.62693 1.41503 1.35017 1.08739 1.28165 1.19143 1.29739 1.02455 0.97195 0.86662 1.25162 0.94557 0.94214 0.98842 1.69790 1.39363 1.01190 1.37524 0.87192 0.79748 0.79111 0.85919 1.17759 1.21808 1.18761 1.17711 0.91293 0.95843 0.88312 1.21144 1.00199 1.00979 0.92262 1.20850 0.96138 0.98331 0.98148 1.20927 0.99658 0.97945 0.97742 1.20898 0.99376 0.99713 0.93303 1.21149 0.93907 0.98869 0.99496 0.89465 0.92310 0.90212 0.89627 0.90237 0.88603 0.92330 0.92203 0.90669 0.91185 0.86458 0.86708 0.86868 0.86481 0.85422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.04 8.71 36.00 0.31 -0.73 16 2 C 0.06 1.03 6.75 -82.10 -0.55 0.48 16 3 N -0.38 -7.12 12.07 33.42 0.40 -6.72 16 4 O 0.09 1.47 11.20 17.17 0.19 1.66 16 5 C -0.04 -0.63 7.49 -35.30 -0.26 -0.89 16 6 C -0.07 -0.86 10.17 36.01 0.37 -0.49 16 7 C -0.17 -3.04 4.74 -104.42 -0.49 -3.53 16 8 C -0.02 -0.36 2.17 -92.92 -0.20 -0.56 16 9 H 0.11 2.02 5.71 -51.93 -0.30 1.72 16 10 C -0.14 -2.16 8.94 37.16 0.33 -1.83 16 11 C 0.49 10.54 6.58 -10.99 -0.07 10.46 16 12 O -0.57 -13.03 12.37 5.55 0.07 -12.96 16 13 N -0.42 -9.51 2.46 -58.98 -0.15 -9.66 16 14 C -0.36 -8.57 8.72 -14.93 -0.13 -8.70 16 15 H 0.12 2.73 6.08 -52.49 -0.32 2.41 16 16 C 0.08 2.04 5.11 -17.48 -0.09 1.95 16 17 N -0.85 -21.82 13.96 55.49 0.77 -21.05 16 18 Si 0.85 20.00 23.79 -169.99 -4.04 15.96 16 19 H -0.25 -5.89 5.89 56.52 0.33 -5.56 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.26 -6.28 6.66 56.52 0.38 -5.90 16 22 C 0.16 3.60 2.47 -83.70 -0.21 3.39 16 23 C -0.13 -2.70 5.85 -39.37 -0.23 -2.93 16 24 C -0.12 -2.14 9.72 -39.61 -0.39 -2.53 16 25 C -0.14 -2.47 10.00 -39.53 -0.40 -2.86 16 26 C -0.11 -2.04 9.87 -39.61 -0.39 -2.43 16 27 C -0.11 -2.37 8.49 -39.37 -0.33 -2.70 16 28 H 0.09 1.56 7.45 -51.93 -0.39 1.17 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 1.29 5.36 -51.93 -0.28 1.02 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.10 1.19 7.38 -51.93 -0.38 0.80 16 34 H 0.06 0.91 5.63 -51.93 -0.29 0.62 16 35 H 0.06 0.82 8.14 -51.94 -0.42 0.40 16 36 H 0.07 1.23 7.43 -51.93 -0.39 0.84 16 37 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 38 H 0.12 2.62 7.85 -52.49 -0.41 2.21 16 39 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 41 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.13 2.63 8.06 -52.49 -0.42 2.21 16 LS Contribution 337.28 15.07 5.08 5.08 Total: -1.00 -28.86 337.28 -5.77 -34.63 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -5.37 Total: 6.96 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -2.74 Total: -13.90 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 1.03 Total: -37.43 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.26 Total: -11.30 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.04 Total: 15.96 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.86 -5.77 -34.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194761536.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.473 kcal (2) G-P(sol) polarization free energy of solvation -28.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds