Wall clock time and date at job start Tue Mar 31 2020 11:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30428 * 125.99918 * 2 1 4 4 N 1.39925 * 108.92134 * 179.97438 * 3 2 1 5 5 C 1.46501 * 125.74321 * 180.02562 * 4 3 2 6 6 C 1.34221 * 108.51373 * 359.73423 * 4 3 2 7 7 C 1.50701 * 126.29810 * 180.29585 * 6 4 3 8 8 C 1.38123 * 107.40669 * 0.42489 * 6 4 3 9 9 C 1.47291 * 126.42728 * 179.84033 * 8 6 4 10 10 O 1.21527 * 119.99650 * 269.71169 * 9 8 6 11 11 O 1.34744 * 120.00308 * 89.71157 * 9 8 6 12 12 C 1.45197 * 117.00326 * 179.97438 * 11 9 8 13 13 C 1.50696 * 109.47607 * 180.02562 * 12 11 9 14 14 C 1.38635 * 119.74985 * 269.73319 * 13 12 11 15 15 C 1.37617 * 120.24687 * 179.71926 * 14 13 12 16 16 C 1.40716 * 119.74723 * 0.57065 * 15 14 13 17 17 C 1.41396 * 120.24644 * 179.68554 * 16 15 14 18 18 H 1.08005 * 119.99733 * 204.40359 * 17 16 15 19 19 C 1.39939 * 120.00101 * 24.40261 * 17 16 15 20 20 N 1.30820 * 120.00244 * 17.84696 * 19 17 16 21 21 Si 1.86804 * 120.00028 * 197.85075 * 19 17 16 22 22 H 1.48499 * 109.47197 * 89.99595 * 21 19 17 23 23 H 1.48506 * 109.47141 * 209.99804 * 21 19 17 24 24 H 1.48498 * 109.46874 * 329.99781 * 21 19 17 25 25 C 1.40719 * 119.51127 * 359.69821 * 16 15 14 26 26 C 1.37620 * 119.74095 * 0.02562 * 25 16 15 27 27 H 1.09008 * 109.47000 * 270.00168 * 1 2 3 28 28 H 1.09003 * 109.46921 * 29.99207 * 1 2 3 29 29 H 1.08993 * 109.47638 * 149.99691 * 1 2 3 30 30 H 1.08998 * 109.46819 * 89.98241 * 5 4 3 31 31 H 1.08997 * 109.47206 * 209.98188 * 5 4 3 32 32 H 1.09002 * 109.47178 * 329.98454 * 5 4 3 33 33 H 1.08994 * 109.47228 * 270.14947 * 7 6 4 34 34 H 1.09000 * 109.46987 * 30.15542 * 7 6 4 35 35 H 1.09001 * 109.47171 * 150.15339 * 7 6 4 36 36 H 1.09007 * 109.47184 * 59.99774 * 12 11 9 37 37 H 1.08998 * 109.47118 * 300.00431 * 12 11 9 38 38 H 1.07993 * 119.87867 * 359.97096 * 14 13 12 39 39 H 1.08003 * 120.13271 * 180.27444 * 15 14 13 40 40 H 0.96997 * 120.00535 * 180.02562 * 20 19 17 41 41 H 1.07994 * 120.12787 * 179.97438 * 25 16 15 42 42 H 1.08006 * 119.87289 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0552 0.0000 4 7 3.6112 0.6443 0.0006 5 6 4.7784 1.5296 0.0013 6 6 3.6448 -0.6975 0.0069 7 6 4.8813 -1.5589 0.0159 8 6 2.3376 -1.1436 0.0005 9 6 1.8927 -2.5477 0.0007 10 8 1.7099 -3.1273 -1.0518 11 8 1.6883 -3.1896 1.1676 12 6 1.2497 -4.5717 1.0918 13 6 1.0742 -5.1202 2.4844 14 6 2.1397 -5.7397 3.1192 15 6 1.9924 -6.2391 4.3930 16 6 0.7511 -6.1299 5.0466 17 6 0.5861 -6.6453 6.3529 18 1 -0.3966 -6.9249 6.7030 19 6 1.6961 -6.7931 7.1921 20 7 2.8056 -6.1522 6.9283 21 14 1.5936 -7.9056 8.6892 22 1 2.0070 -9.2814 8.3128 23 1 2.4952 -7.3909 9.7511 24 1 0.1972 -7.9290 9.1938 25 6 -0.3251 -5.5042 4.3904 26 6 -0.1533 -5.0069 3.1187 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8901 -0.5137 29 1 -0.3634 -0.8899 -0.5138 30 1 5.0672 1.7492 1.0292 31 1 5.6061 1.0400 -0.5119 32 1 4.5304 2.4582 -0.5127 33 1 5.1853 -1.7690 -1.0095 34 1 5.6852 -1.0351 0.5332 35 1 4.6678 -2.4956 0.5308 36 1 1.9967 -5.1613 0.5602 37 1 0.3002 -4.6229 0.5592 38 1 3.0901 -5.8270 2.6137 39 1 2.8250 -6.7174 4.8875 40 1 3.5752 -6.2549 7.5097 41 1 -1.2823 -5.4153 4.8825 42 1 -0.9779 -4.5266 2.6130 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271857096.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:13 Heat of formation + Delta-G solvation = -2.472796 kcal Electronic energy + Delta-G solvation = -24936.608146 eV Core-core repulsion = 21268.778243 eV Total energy + Delta-G solvation = -3667.829903 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.57993 -39.60822 -37.62332 -35.85791 -34.45954 -33.84302 -32.32498 -30.75473 -29.73876 -29.35333 -28.05387 -26.98744 -25.90520 -23.94075 -22.38929 -21.06899 -20.04760 -19.86685 -19.67313 -17.54975 -17.37277 -16.74006 -15.92718 -15.88622 -15.62189 -15.23452 -14.34214 -14.11949 -13.86894 -13.69386 -13.64436 -13.44899 -13.37584 -12.89134 -12.79800 -12.59540 -12.33330 -12.25128 -12.12214 -12.03675 -11.99976 -11.72143 -11.18803 -10.99099 -10.93029 -10.80830 -10.44070 -10.22143 -10.07493 -9.67786 -9.45101 -9.30587 -9.21860 -8.64657 -7.54595 -7.43196 -6.85464 -4.45151 1.52765 2.12182 2.31833 2.41565 2.58972 3.01484 3.01922 3.05300 3.06259 3.56715 3.86457 4.25123 4.31501 4.55554 4.66622 4.83075 4.89955 5.08292 5.14610 5.22291 5.34044 5.56455 5.58810 5.60829 5.63959 5.71137 5.73664 5.78301 5.86053 6.11545 6.27550 6.32984 6.39098 6.69690 6.87167 6.90535 6.98828 7.20100 7.28252 7.48805 7.53324 7.75945 7.97247 8.02869 8.16912 8.20869 8.55392 8.80044 8.88399 10.08314 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.018273 B = 0.002809 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.955887 B = 9966.707914 C =10481.147967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.122 3.878 3 N -0.298 5.298 4 N -0.363 5.363 5 C 0.099 3.901 6 C 0.136 3.864 7 C -0.101 4.101 8 C -0.264 4.264 9 C 0.544 3.456 10 O -0.513 6.513 11 O -0.341 6.341 12 C 0.133 3.867 13 C -0.234 4.234 14 C -0.076 4.076 15 C -0.170 4.170 16 C 0.118 3.882 17 C -0.457 4.457 18 H 0.080 0.920 19 C 0.075 3.925 20 N -0.786 5.786 21 Si 0.910 3.090 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.261 1.261 25 C -0.230 4.230 26 C -0.063 4.063 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.088 0.912 39 H 0.120 0.880 40 H 0.282 0.718 41 H 0.095 0.905 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.050 10.639 -10.458 15.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.045 4.045 3 N -0.120 5.120 4 N -0.142 5.142 5 C -0.042 4.042 6 C 0.005 3.995 7 C -0.159 4.159 8 C -0.277 4.277 9 C 0.386 3.614 10 O -0.402 6.402 11 O -0.257 6.257 12 C 0.061 3.939 13 C -0.235 4.235 14 C -0.095 4.095 15 C -0.190 4.190 16 C 0.115 3.885 17 C -0.485 4.485 18 H 0.098 0.902 19 C -0.144 4.144 20 N -0.410 5.410 21 Si 0.734 3.266 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.185 1.185 25 C -0.249 4.249 26 C -0.082 4.082 27 H 0.105 0.895 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.137 0.863 40 H 0.093 0.907 41 H 0.113 0.887 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.388 11.859 -10.643 16.821 hybrid contribution 0.148 -1.257 0.711 1.452 sum 5.535 10.602 -9.932 15.546 Atomic orbital electron populations 1.20299 0.85871 1.03685 1.03898 1.22286 0.96957 0.88525 0.96690 1.77090 0.85804 1.22150 1.26923 1.48070 1.05981 1.03919 1.56269 1.21937 0.83981 0.94446 1.03873 1.21287 0.95934 0.84707 0.97552 1.20611 0.92213 0.99082 1.03971 1.19095 0.92426 0.91830 1.24343 1.20140 0.73379 0.85536 0.82356 1.90798 1.48155 1.67946 1.33294 1.86899 1.76903 1.29131 1.32775 1.21761 0.98527 0.76883 0.96687 1.18683 0.95847 1.12730 0.96242 1.20530 0.95649 0.98112 0.95160 1.21287 0.99204 1.05121 0.93350 1.17686 0.91142 0.87332 0.92317 1.19681 0.94792 1.36691 0.97381 0.90176 1.25963 0.94648 0.94162 0.99596 1.69828 1.03125 1.31708 1.36365 0.86278 0.79495 0.80674 0.80116 1.19164 1.20240 1.18517 1.20966 0.99492 1.08160 0.96300 1.20398 0.95185 0.97887 0.94706 0.89477 0.90255 0.90252 0.90209 0.89222 0.88887 0.89371 0.90137 0.88891 0.92032 0.92019 0.89364 0.86268 0.90684 0.88729 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.28 36.01 0.37 -0.58 16 2 C 0.12 1.83 7.27 -82.01 -0.60 1.23 16 3 N -0.30 -4.32 12.50 33.90 0.42 -3.89 16 4 N -0.36 -4.43 3.98 -63.33 -0.25 -4.68 16 5 C 0.10 0.67 11.05 59.85 0.66 1.33 16 6 C 0.14 1.80 7.01 -81.59 -0.57 1.23 16 7 C -0.10 -0.97 9.70 36.01 0.35 -0.63 16 8 C -0.26 -4.23 6.00 -105.08 -0.63 -4.87 16 9 C 0.54 9.75 7.12 34.41 0.25 10.00 16 10 O -0.51 -9.98 16.90 -19.29 -0.33 -10.30 16 11 O -0.34 -6.68 10.21 -40.61 -0.41 -7.09 16 12 C 0.13 2.58 5.59 36.00 0.20 2.78 16 13 C -0.23 -5.18 5.54 -104.33 -0.58 -5.76 16 14 C -0.08 -1.76 9.67 -39.66 -0.38 -2.15 16 15 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 16 C 0.12 3.09 5.58 -106.82 -0.60 2.50 16 17 C -0.46 -11.84 9.05 -37.74 -0.34 -12.18 16 18 H 0.08 1.99 7.91 -52.48 -0.41 1.58 16 19 C 0.08 1.84 5.14 -17.35 -0.09 1.75 16 20 N -0.79 -19.83 10.95 55.55 0.61 -19.22 16 21 Si 0.91 18.14 29.60 -169.99 -5.03 13.11 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 23 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 24 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 25 C -0.23 -5.58 9.80 -38.87 -0.38 -5.96 16 26 C -0.06 -1.42 9.67 -39.66 -0.38 -1.81 16 27 H 0.09 0.99 8.14 -51.92 -0.42 0.56 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 0.95 8.01 -51.93 -0.42 0.54 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.38 7.64 -51.93 -0.40 -0.02 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.56 7.71 -51.93 -0.40 0.16 16 35 H 0.09 1.03 7.96 -51.93 -0.41 0.61 16 36 H 0.06 1.12 8.08 -51.92 -0.42 0.71 16 37 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 38 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 39 H 0.12 3.12 6.16 -52.48 -0.32 2.80 16 40 H 0.28 6.44 8.30 -40.82 -0.34 6.11 16 41 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 42 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 367.33 15.07 5.54 5.54 Total: -1.00 -31.65 367.33 -8.24 -39.88 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -5.72 Total: 4.45 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -3.06 Total: -17.79 kcal Atomic # 7 Polarization: -28.57 SS G_CDS: 0.78 Total: -27.79 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.74 Total: -17.39 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.65 -8.24 -39.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271857096.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.411 kcal (2) G-P(sol) polarization free energy of solvation -31.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds