Wall clock time and date at job start Tue Mar 31 2020 11:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30428 * 125.99918 * 2 1 4 4 N 1.39925 * 108.92134 * 179.97438 * 3 2 1 5 5 C 1.46501 * 125.74321 * 180.02562 * 4 3 2 6 6 C 1.34221 * 108.51373 * 359.73423 * 4 3 2 7 7 C 1.50701 * 126.29810 * 180.29585 * 6 4 3 8 8 C 1.38123 * 107.40669 * 0.42489 * 6 4 3 9 9 C 1.47291 * 126.42728 * 179.84033 * 8 6 4 10 10 O 1.21527 * 119.99650 * 269.71169 * 9 8 6 11 11 O 1.34744 * 120.00308 * 89.71157 * 9 8 6 12 12 C 1.45197 * 117.00326 * 179.97438 * 11 9 8 13 13 C 1.50696 * 109.47607 * 180.02562 * 12 11 9 14 14 C 1.38635 * 119.74985 * 269.73319 * 13 12 11 15 15 C 1.37617 * 120.24687 * 179.71926 * 14 13 12 16 16 C 1.40716 * 119.74723 * 0.57065 * 15 14 13 17 17 C 1.41396 * 120.24644 * 179.68554 * 16 15 14 18 18 H 1.08005 * 119.99733 * 204.40359 * 17 16 15 19 19 C 1.39939 * 120.00101 * 24.40261 * 17 16 15 20 20 N 1.30820 * 120.00244 * 17.84696 * 19 17 16 21 21 Si 1.86804 * 120.00028 * 197.85075 * 19 17 16 22 22 H 1.48499 * 109.47197 * 89.99595 * 21 19 17 23 23 H 1.48506 * 109.47141 * 209.99804 * 21 19 17 24 24 H 1.48498 * 109.46874 * 329.99781 * 21 19 17 25 25 C 1.40719 * 119.51127 * 359.69821 * 16 15 14 26 26 C 1.37620 * 119.74095 * 0.02562 * 25 16 15 27 27 H 1.09008 * 109.47000 * 270.00168 * 1 2 3 28 28 H 1.09003 * 109.46921 * 29.99207 * 1 2 3 29 29 H 1.08993 * 109.47638 * 149.99691 * 1 2 3 30 30 H 1.08998 * 109.46819 * 89.98241 * 5 4 3 31 31 H 1.08997 * 109.47206 * 209.98188 * 5 4 3 32 32 H 1.09002 * 109.47178 * 329.98454 * 5 4 3 33 33 H 1.08994 * 109.47228 * 270.14947 * 7 6 4 34 34 H 1.09000 * 109.46987 * 30.15542 * 7 6 4 35 35 H 1.09001 * 109.47171 * 150.15339 * 7 6 4 36 36 H 1.09007 * 109.47184 * 59.99774 * 12 11 9 37 37 H 1.08998 * 109.47118 * 300.00431 * 12 11 9 38 38 H 1.07993 * 119.87867 * 359.97096 * 14 13 12 39 39 H 1.08003 * 120.13271 * 180.27444 * 15 14 13 40 40 H 0.96997 * 120.00535 * 180.02562 * 20 19 17 41 41 H 1.07994 * 120.12787 * 179.97438 * 25 16 15 42 42 H 1.08006 * 119.87289 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0552 0.0000 4 7 3.6112 0.6443 0.0006 5 6 4.7784 1.5296 0.0013 6 6 3.6448 -0.6975 0.0069 7 6 4.8813 -1.5589 0.0159 8 6 2.3376 -1.1436 0.0005 9 6 1.8927 -2.5477 0.0007 10 8 1.7099 -3.1273 -1.0518 11 8 1.6883 -3.1896 1.1676 12 6 1.2497 -4.5717 1.0918 13 6 1.0742 -5.1202 2.4844 14 6 2.1397 -5.7397 3.1192 15 6 1.9924 -6.2391 4.3930 16 6 0.7511 -6.1299 5.0466 17 6 0.5861 -6.6453 6.3529 18 1 -0.3966 -6.9249 6.7030 19 6 1.6961 -6.7931 7.1921 20 7 2.8056 -6.1522 6.9283 21 14 1.5936 -7.9056 8.6892 22 1 2.0070 -9.2814 8.3128 23 1 2.4952 -7.3909 9.7511 24 1 0.1972 -7.9290 9.1938 25 6 -0.3251 -5.5042 4.3904 26 6 -0.1533 -5.0069 3.1187 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8901 -0.5137 29 1 -0.3634 -0.8899 -0.5138 30 1 5.0672 1.7492 1.0292 31 1 5.6061 1.0400 -0.5119 32 1 4.5304 2.4582 -0.5127 33 1 5.1853 -1.7690 -1.0095 34 1 5.6852 -1.0351 0.5332 35 1 4.6678 -2.4956 0.5308 36 1 1.9967 -5.1613 0.5602 37 1 0.3002 -4.6229 0.5592 38 1 3.0901 -5.8270 2.6137 39 1 2.8250 -6.7174 4.8875 40 1 3.5752 -6.2549 7.5097 41 1 -1.2823 -5.4153 4.8825 42 1 -0.9779 -4.5266 2.6130 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271857096.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:10 Heat of formation + Delta-G solvation = -18.725650 kcal Electronic energy + Delta-G solvation = -24937.312922 eV Core-core repulsion = 21268.778243 eV Total energy + Delta-G solvation = -3668.534679 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -42.60948 -41.04725 -39.43174 -37.38700 -35.66818 -35.36271 -33.30099 -32.50708 -31.21724 -30.57340 -29.33911 -28.42224 -26.80061 -25.59300 -23.65840 -22.93556 -21.83526 -21.07061 -20.64281 -19.26184 -18.80474 -18.06794 -17.28572 -17.20514 -16.79033 -16.65231 -15.93194 -15.59237 -15.43594 -14.96129 -14.54583 -14.48477 -14.31438 -14.11420 -13.97181 -13.83377 -13.76872 -13.53646 -13.50281 -13.38103 -12.97128 -12.90543 -12.84860 -12.69061 -12.58790 -12.15284 -12.01006 -11.69642 -11.59225 -11.41567 -11.26696 -11.04178 -10.25119 -9.71219 -9.42451 -9.31830 -8.67941 -6.38879 0.51266 0.75283 1.03796 1.12392 1.20868 1.36300 1.39269 1.49346 1.52596 2.11929 2.20446 2.74241 3.37438 3.44393 3.71096 3.82122 4.03461 4.11357 4.12603 4.20471 4.29292 4.37855 4.49509 4.52743 4.54977 4.56597 4.62268 4.65276 4.68756 4.81697 4.90861 4.94434 5.01640 5.12815 5.31412 5.34712 5.40706 5.47433 5.66395 5.84862 5.89588 6.06563 6.15888 6.33119 6.46568 6.65344 6.74399 6.89487 6.98280 8.28729 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.018273 B = 0.002809 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.955887 B = 9966.707914 C =10481.147967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.109 3.891 3 N -0.317 5.317 4 N -0.357 5.357 5 C 0.084 3.916 6 C 0.144 3.856 7 C -0.101 4.101 8 C -0.311 4.311 9 C 0.555 3.445 10 O -0.532 6.532 11 O -0.355 6.355 12 C 0.138 3.862 13 C -0.229 4.229 14 C -0.080 4.080 15 C -0.193 4.193 16 C 0.087 3.913 17 C -0.493 4.493 18 H 0.079 0.921 19 C 0.035 3.965 20 N -0.818 5.818 21 Si 0.985 3.015 22 H -0.261 1.261 23 H -0.267 1.267 24 H -0.258 1.258 25 C -0.245 4.245 26 C -0.066 4.066 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.121 0.879 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.290 0.710 41 H 0.102 0.898 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.161 11.532 -10.952 17.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.057 4.057 3 N -0.140 5.140 4 N -0.136 5.136 5 C -0.054 4.054 6 C 0.011 3.989 7 C -0.159 4.159 8 C -0.324 4.324 9 C 0.399 3.601 10 O -0.422 6.422 11 O -0.271 6.271 12 C 0.065 3.935 13 C -0.230 4.230 14 C -0.098 4.098 15 C -0.212 4.212 16 C 0.085 3.915 17 C -0.522 4.522 18 H 0.097 0.903 19 C -0.181 4.181 20 N -0.443 5.443 21 Si 0.805 3.195 22 H -0.186 1.186 23 H -0.192 1.192 24 H -0.182 1.182 25 C -0.265 4.265 26 C -0.084 4.084 27 H 0.109 0.891 28 H 0.116 0.884 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.139 0.861 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.101 0.899 41 H 0.120 0.880 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.504 12.790 -11.154 18.174 hybrid contribution -0.124 -1.394 0.726 1.576 sum 6.380 11.396 -10.429 16.714 Atomic orbital electron populations 1.20367 0.84662 1.04372 1.04312 1.22659 0.98098 0.88303 0.96637 1.77026 0.87060 1.22291 1.27582 1.48519 1.06362 1.04218 1.54505 1.22436 0.82996 0.94516 1.05468 1.21771 0.96135 0.85506 0.95535 1.20768 0.91591 0.98057 1.05437 1.19236 0.94216 0.90857 1.28062 1.20363 0.72375 0.86016 0.81395 1.90775 1.49103 1.68635 1.33682 1.86864 1.77256 1.28979 1.33993 1.21657 0.99703 0.77210 0.94893 1.18992 0.95307 1.11487 0.97254 1.20783 0.96969 0.97511 0.94540 1.21265 0.98886 1.06589 0.94484 1.18050 0.92057 0.88299 0.93132 1.19926 0.95557 1.38608 0.98087 0.90290 1.26812 0.93840 0.94960 1.02448 1.69872 1.03916 1.32669 1.37849 0.85164 0.79633 0.78454 0.76242 1.18573 1.19175 1.18167 1.21173 0.99513 1.08497 0.97295 1.20723 0.96272 0.97200 0.94183 0.89120 0.88415 0.90696 0.88813 0.86081 0.87871 0.87433 0.86881 0.90502 0.90929 0.90717 0.87360 0.87692 0.89884 0.87988 0.86455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.85 10.28 71.24 0.73 -1.12 16 2 C 0.11 3.20 7.27 43.53 0.32 3.52 16 3 N -0.32 -8.82 12.50 -46.65 -0.58 -9.41 16 4 N -0.36 -7.95 3.98 -354.27 -1.41 -9.36 16 5 C 0.08 0.88 11.05 127.77 1.41 2.29 16 6 C 0.14 3.55 7.01 42.17 0.30 3.85 16 7 C -0.10 -1.69 9.70 71.24 0.69 -1.00 16 8 C -0.31 -9.76 6.00 -20.16 -0.12 -9.88 16 9 C 0.55 19.61 7.12 70.20 0.50 20.11 16 10 O -0.53 -20.38 16.90 19.75 0.33 -20.04 16 11 O -0.35 -13.63 10.21 -56.55 -0.58 -14.21 16 12 C 0.14 5.16 5.59 71.23 0.40 5.55 16 13 C -0.23 -10.02 5.54 -19.68 -0.11 -10.13 16 14 C -0.08 -3.71 9.67 22.22 0.21 -3.50 16 15 C -0.19 -10.13 8.70 22.73 0.20 -9.94 16 16 C 0.09 4.71 5.58 -21.29 -0.12 4.59 16 17 C -0.49 -26.32 9.05 23.46 0.21 -26.11 16 18 H 0.08 4.05 7.91 -2.91 -0.02 4.03 16 19 C 0.04 1.75 5.14 85.26 0.44 2.19 16 20 N -0.82 -42.13 10.95 21.82 0.24 -41.89 16 21 Si 0.98 37.36 29.60 68.60 2.03 39.39 16 22 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 23 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 24 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 25 C -0.25 -12.10 9.80 22.73 0.22 -11.87 16 26 C -0.07 -2.91 9.67 22.22 0.21 -2.70 16 27 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 28 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.07 1.79 8.01 -2.39 -0.02 1.77 16 30 H 0.09 0.76 8.14 -2.39 -0.02 0.75 16 31 H 0.12 0.51 7.64 -2.39 -0.02 0.49 16 32 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.11 1.14 7.71 -2.39 -0.02 1.12 16 35 H 0.08 1.59 7.96 -2.39 -0.02 1.57 16 36 H 0.07 2.55 8.08 -2.38 -0.02 2.53 16 37 H 0.07 2.60 8.08 -2.39 -0.02 2.58 16 38 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 39 H 0.11 5.72 6.16 -2.91 -0.02 5.70 16 40 H 0.29 13.42 8.30 -92.71 -0.77 12.65 16 41 H 0.10 4.72 8.06 -2.91 -0.02 4.70 16 42 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -69.95 367.33 6.56 -63.39 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 1.03 Total: 26.28 kcal Atomic # 6 Polarization: -39.65 SS G_CDS: 5.50 Total: -34.15 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: -1.75 Total: -60.66 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -0.24 Total: -34.25 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.39 kcal Total: -69.95 6.56 -63.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271857096.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.667 kcal (2) G-P(sol) polarization free energy of solvation -69.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds