Wall clock time and date at job start Tue Mar 31 2020 10:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35772 * 116.99775 * 2 1 4 4 C 1.39925 * 119.59748 * 0.02562 * 3 2 1 5 5 C 1.35934 * 120.76702 * 180.27337 * 4 3 2 6 6 C 1.40632 * 119.84232 * 359.45215 * 5 4 3 7 7 C 1.40407 * 121.07556 * 180.28971 * 6 5 4 8 8 C 1.39106 * 118.00739 * 180.27213 * 7 6 5 9 9 C 1.47674 * 120.26747 * 179.97438 * 8 7 6 10 10 O 1.21571 * 120.00394 * 186.30807 * 9 8 7 11 11 N 1.34784 * 119.99476 * 6.30864 * 9 8 7 12 12 C 1.46502 * 119.99951 * 180.02562 * 11 9 8 13 13 C 1.52994 * 109.47249 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47119 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00208 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99879 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99780 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99951 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46830 * 90.00560 * 18 16 14 20 20 H 1.48502 * 109.46996 * 210.00098 * 18 16 14 21 21 H 1.48500 * 109.47250 * 330.00148 * 18 16 14 22 22 C 1.40584 * 119.47292 * 359.97438 * 8 7 6 23 23 C 1.50705 * 119.24541 * 180.02562 * 22 8 7 24 24 N 1.30807 * 121.51270 * 0.02562 * 22 8 7 25 25 C 1.33901 * 121.72148 * 359.97438 * 24 22 8 26 26 C 1.37709 * 119.59352 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47007 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47345 * 299.99682 * 1 2 3 29 29 H 1.09004 * 109.47102 * 59.99959 * 1 2 3 30 30 H 1.08000 * 119.61434 * 359.97438 * 4 3 2 31 31 H 1.08007 * 120.07564 * 179.70327 * 5 4 3 32 32 H 1.07997 * 120.99320 * 0.25667 * 7 6 5 33 33 H 0.96996 * 120.00278 * 0.02562 * 11 9 8 34 34 H 1.09005 * 109.46798 * 299.99631 * 12 11 9 35 35 H 1.09000 * 109.46866 * 59.99754 * 12 11 9 36 36 H 1.08998 * 109.46975 * 299.99882 * 13 12 11 37 37 H 1.08999 * 109.47020 * 59.99703 * 13 12 11 38 38 H 0.97002 * 119.99574 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.46874 * 276.66773 * 23 22 8 40 40 H 1.09001 * 109.46820 * 36.66015 * 23 22 8 41 41 H 1.08992 * 109.47256 * 156.66491 * 23 22 8 42 42 H 1.07994 * 120.15637 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2098 0.0000 4 6 1.2750 2.3779 0.0005 5 6 1.8672 3.6014 -0.0050 6 6 3.2700 3.6999 0.0003 7 6 3.9088 4.9503 0.0008 8 6 5.2996 4.9733 0.0003 9 6 6.0228 6.2608 0.0003 10 8 7.2328 6.2785 -0.1158 11 7 5.3411 7.4165 0.1290 12 6 6.0584 8.6939 0.1284 13 6 5.0581 9.8405 0.2882 14 6 5.7960 11.1545 0.2882 15 1 6.8709 11.1702 0.1850 16 6 5.0989 12.3366 0.4211 17 7 5.7429 13.4833 0.4216 18 14 3.2396 12.3094 0.6003 19 1 2.8823 12.2257 2.0392 20 1 2.6682 13.5511 0.0197 21 1 2.6905 11.1299 -0.1156 22 6 6.0115 3.7610 -0.0001 23 6 7.5182 3.7919 -0.0001 24 7 5.3960 2.6067 -0.0006 25 6 4.0597 2.5214 -0.0002 26 6 3.4210 1.2721 -0.0005 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.1973 2.3065 0.0005 31 1 1.2617 4.4958 -0.0094 32 1 3.3373 5.8667 0.0013 33 1 4.3758 7.4024 0.2220 34 1 6.7674 8.7128 0.9561 35 1 6.5956 8.8085 -0.8131 36 1 4.3488 9.8217 -0.5391 37 1 4.5212 9.7257 1.2298 38 1 5.2523 14.3149 0.5147 39 1 7.8790 3.9190 -1.0207 40 1 7.8645 4.6233 0.6139 41 1 7.9008 2.8558 0.4066 42 1 4.0052 0.3639 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273067486.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:29 Heat of formation + Delta-G solvation = -22.627309 kcal Electronic energy + Delta-G solvation = -24649.005833 eV Core-core repulsion = 20980.301965 eV Total energy + Delta-G solvation = -3668.703868 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.35842 -40.01775 -38.92584 -36.49848 -35.16383 -33.82914 -32.80797 -31.73700 -30.87777 -29.91010 -27.89989 -27.65661 -25.29548 -24.08233 -22.84315 -22.38380 -20.97584 -20.75116 -19.11816 -17.93647 -17.30944 -16.92221 -16.38410 -16.24312 -16.19433 -15.42835 -15.22274 -14.94905 -14.50329 -14.48756 -14.21036 -13.79503 -13.55129 -13.37896 -13.12830 -12.92304 -12.83640 -12.64493 -12.47741 -12.14869 -11.94670 -11.60931 -11.53542 -11.28083 -11.17464 -10.49226 -10.39364 -10.28976 -10.02635 -9.92973 -9.44500 -9.27796 -8.84927 -8.69068 -8.61175 -8.28663 -6.15149 -4.15581 -0.04063 0.39671 1.57352 2.34672 2.72380 3.20453 3.21045 3.28026 3.29624 3.38534 3.85087 4.06679 4.17102 4.33190 4.35497 4.40083 4.49200 4.58672 4.67040 4.68100 4.75347 4.99906 5.12082 5.17523 5.25889 5.41107 5.52169 5.64823 5.75226 5.78947 5.82250 5.91909 6.02262 6.10664 6.13774 6.16468 6.47167 6.49359 6.66984 6.88338 7.05644 7.16226 7.61045 7.69124 7.78795 8.36388 8.42723 8.89224 9.44614 10.97826 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.016412 B = 0.002797 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.617699 B =10006.941165 C =11675.602829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.313 6.313 3 C 0.153 3.847 4 C -0.200 4.200 5 C -0.041 4.041 6 C -0.150 4.150 7 C -0.004 4.004 8 C -0.194 4.194 9 C 0.555 3.445 10 O -0.531 6.531 11 N -0.720 5.720 12 C 0.130 3.870 13 C -0.023 4.023 14 C -0.523 4.523 15 H 0.077 0.923 16 C 0.069 3.931 17 N -0.897 5.897 18 Si 0.882 3.118 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.267 1.267 22 C 0.226 3.774 23 C -0.113 4.113 24 N -0.490 5.490 25 C 0.187 3.813 26 C -0.151 4.151 27 H 0.102 0.898 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.145 0.855 33 H 0.393 0.607 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.022 0.978 37 H 0.017 0.983 38 H 0.265 0.735 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.069 0.931 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.457 -25.940 -0.675 28.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.226 6.226 3 C 0.105 3.895 4 C -0.218 4.218 5 C -0.060 4.060 6 C -0.152 4.152 7 C -0.030 4.030 8 C -0.199 4.199 9 C 0.341 3.659 10 O -0.409 6.409 11 N -0.370 5.370 12 C 0.008 3.992 13 C -0.060 4.060 14 C -0.562 4.562 15 H 0.095 0.905 16 C -0.133 4.133 17 N -0.535 5.535 18 Si 0.709 3.291 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.191 1.191 22 C 0.073 3.927 23 C -0.169 4.169 24 N -0.200 5.200 25 C 0.066 3.934 26 C -0.170 4.170 27 H 0.121 0.879 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.154 0.846 31 H 0.156 0.844 32 H 0.163 0.837 33 H 0.227 0.773 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.040 0.960 37 H 0.036 0.964 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.126 0.874 41 H 0.088 0.912 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.131 -26.722 -0.746 28.957 hybrid contribution -2.430 1.110 0.133 2.675 sum -13.561 -25.611 -0.614 28.987 Atomic orbital electron populations 1.23135 0.77965 1.04319 1.01597 1.86080 1.21710 1.26607 1.88156 1.18930 0.91879 0.84244 0.94429 1.21078 1.00562 0.92161 1.08031 1.20895 0.92732 0.97929 0.94404 1.18711 0.94698 0.93847 1.07950 1.22003 0.93539 0.97374 0.90106 1.20914 0.94018 0.95717 1.09265 1.17895 0.87184 0.83308 0.77484 1.90728 1.13337 1.86961 1.49917 1.46278 1.10865 1.06878 1.72945 1.21578 0.95738 0.79913 1.01953 1.19804 0.95422 0.94086 0.96726 1.20897 0.95834 0.88342 1.51095 0.90534 1.25005 0.98456 0.95395 0.94435 1.69900 1.36020 0.97627 1.49959 0.86757 0.85998 0.77701 0.78632 1.20215 1.21246 1.19140 1.21658 0.97749 0.86105 0.87174 1.21148 0.87120 1.04040 1.04623 1.67930 1.08533 1.27354 1.16212 1.18511 0.89129 0.91832 0.93921 1.19988 0.90980 0.97266 1.08799 0.87950 0.92348 0.92361 0.84632 0.84373 0.83705 0.77257 0.91579 0.91558 0.96006 0.96430 0.92510 0.89584 0.87417 0.91240 0.83804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.80 101.05 0.99 1.10 16 2 O -0.31 -2.68 10.47 -19.03 -0.20 -2.88 16 3 C 0.15 1.46 6.67 -39.14 -0.26 1.20 16 4 C -0.20 -1.57 8.94 -39.78 -0.36 -1.92 16 5 C -0.04 -0.34 9.75 -39.51 -0.39 -0.73 16 6 C -0.15 -1.68 5.74 -106.79 -0.61 -2.29 16 7 C 0.00 -0.04 9.37 -38.44 -0.36 -0.40 16 8 C -0.19 -2.66 5.88 -104.84 -0.62 -3.28 16 9 C 0.56 8.88 7.69 -12.40 -0.10 8.79 16 10 O -0.53 -9.84 13.31 5.30 0.07 -9.77 16 11 N -0.72 -11.32 5.51 -61.30 -0.34 -11.66 16 12 C 0.13 2.53 5.61 -4.04 -0.02 2.51 16 13 C -0.02 -0.50 4.16 -27.89 -0.12 -0.61 16 14 C -0.52 -14.29 9.66 -34.44 -0.33 -14.63 16 15 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 16 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 17 N -0.90 -26.87 13.96 55.43 0.77 -26.10 16 18 Si 0.88 20.52 27.47 -169.99 -4.67 15.85 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.27 -5.80 6.54 56.52 0.37 -5.43 16 22 C 0.23 3.18 6.82 -82.14 -0.56 2.62 16 23 C -0.11 -1.46 8.82 36.01 0.32 -1.14 16 24 N -0.49 -6.91 10.20 -6.95 -0.07 -6.98 16 25 C 0.19 2.40 6.60 -84.80 -0.56 1.84 16 26 C -0.15 -1.70 9.93 -39.00 -0.39 -2.09 16 27 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.20 7.63 -51.93 -0.40 -0.20 16 29 H 0.06 0.20 7.64 -51.93 -0.40 -0.20 16 30 H 0.14 0.67 6.23 -52.49 -0.33 0.35 16 31 H 0.14 0.79 8.06 -52.48 -0.42 0.36 16 32 H 0.15 1.22 6.53 -52.49 -0.34 0.88 16 33 H 0.39 5.07 6.58 -40.82 -0.27 4.80 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.02 0.47 7.20 -51.93 -0.37 0.09 16 37 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.11 1.54 5.81 -51.93 -0.30 1.24 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 350.89 15.07 5.29 5.29 Total: -1.00 -33.05 350.89 -7.95 -40.99 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -5.34 Total: 2.47 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -3.46 Total: -7.20 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.37 Total: -44.74 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -0.13 Total: -12.65 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.67 Total: 15.85 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.05 -7.95 -40.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273067486.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.364 kcal (2) G-P(sol) polarization free energy of solvation -33.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds