Wall clock time and date at job start Tue Mar 31 2020 10:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35772 * 116.99775 * 2 1 4 4 C 1.39925 * 119.59748 * 0.02562 * 3 2 1 5 5 C 1.35934 * 120.76702 * 180.27337 * 4 3 2 6 6 C 1.40632 * 119.84232 * 359.45215 * 5 4 3 7 7 C 1.40407 * 121.07556 * 180.28971 * 6 5 4 8 8 C 1.39106 * 118.00739 * 180.27213 * 7 6 5 9 9 C 1.47674 * 120.26747 * 179.97438 * 8 7 6 10 10 O 1.21571 * 120.00394 * 186.30807 * 9 8 7 11 11 N 1.34784 * 119.99476 * 6.30864 * 9 8 7 12 12 C 1.46502 * 119.99951 * 180.02562 * 11 9 8 13 13 C 1.52994 * 109.47249 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47119 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00208 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99879 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99780 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99951 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46830 * 90.00560 * 18 16 14 20 20 H 1.48502 * 109.46996 * 210.00098 * 18 16 14 21 21 H 1.48500 * 109.47250 * 330.00148 * 18 16 14 22 22 C 1.40584 * 119.47292 * 359.97438 * 8 7 6 23 23 C 1.50705 * 119.24541 * 180.02562 * 22 8 7 24 24 N 1.30807 * 121.51270 * 0.02562 * 22 8 7 25 25 C 1.33901 * 121.72148 * 359.97438 * 24 22 8 26 26 C 1.37709 * 119.59352 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47007 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47345 * 299.99682 * 1 2 3 29 29 H 1.09004 * 109.47102 * 59.99959 * 1 2 3 30 30 H 1.08000 * 119.61434 * 359.97438 * 4 3 2 31 31 H 1.08007 * 120.07564 * 179.70327 * 5 4 3 32 32 H 1.07997 * 120.99320 * 0.25667 * 7 6 5 33 33 H 0.96996 * 120.00278 * 0.02562 * 11 9 8 34 34 H 1.09005 * 109.46798 * 299.99631 * 12 11 9 35 35 H 1.09000 * 109.46866 * 59.99754 * 12 11 9 36 36 H 1.08998 * 109.46975 * 299.99882 * 13 12 11 37 37 H 1.08999 * 109.47020 * 59.99703 * 13 12 11 38 38 H 0.97002 * 119.99574 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.46874 * 276.66773 * 23 22 8 40 40 H 1.09001 * 109.46820 * 36.66015 * 23 22 8 41 41 H 1.08992 * 109.47256 * 156.66491 * 23 22 8 42 42 H 1.07994 * 120.15637 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2098 0.0000 4 6 1.2750 2.3779 0.0005 5 6 1.8672 3.6014 -0.0050 6 6 3.2700 3.6999 0.0003 7 6 3.9088 4.9503 0.0008 8 6 5.2996 4.9733 0.0003 9 6 6.0228 6.2608 0.0003 10 8 7.2328 6.2785 -0.1158 11 7 5.3411 7.4165 0.1290 12 6 6.0584 8.6939 0.1284 13 6 5.0581 9.8405 0.2882 14 6 5.7960 11.1545 0.2882 15 1 6.8709 11.1702 0.1850 16 6 5.0989 12.3366 0.4211 17 7 5.7429 13.4833 0.4216 18 14 3.2396 12.3094 0.6003 19 1 2.8823 12.2257 2.0392 20 1 2.6682 13.5511 0.0197 21 1 2.6905 11.1299 -0.1156 22 6 6.0115 3.7610 -0.0001 23 6 7.5182 3.7919 -0.0001 24 7 5.3960 2.6067 -0.0006 25 6 4.0597 2.5214 -0.0002 26 6 3.4210 1.2721 -0.0005 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.1973 2.3065 0.0005 31 1 1.2617 4.4958 -0.0094 32 1 3.3373 5.8667 0.0013 33 1 4.3758 7.4024 0.2220 34 1 6.7674 8.7128 0.9561 35 1 6.5956 8.8085 -0.8131 36 1 4.3488 9.8217 -0.5391 37 1 4.5212 9.7257 1.2298 38 1 5.2523 14.3149 0.5147 39 1 7.8790 3.9190 -1.0207 40 1 7.8645 4.6233 0.6139 41 1 7.9008 2.8558 0.4066 42 1 4.0052 0.3639 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273067486.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:28 Heat of formation + Delta-G solvation = -45.414375 kcal Electronic energy + Delta-G solvation = -24649.993954 eV Core-core repulsion = 20980.301965 eV Total energy + Delta-G solvation = -3669.691989 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.22772 -40.92325 -39.92668 -37.34900 -36.62003 -35.05631 -34.43150 -32.64825 -32.16911 -31.09520 -28.85408 -28.18562 -26.85074 -25.14710 -23.66771 -23.29696 -22.58696 -22.00113 -19.94020 -18.96742 -18.90080 -18.10482 -17.25419 -17.13005 -16.82033 -16.63743 -16.30955 -16.16662 -15.87304 -15.66846 -15.31387 -14.87865 -14.75938 -14.56178 -14.31792 -13.98070 -13.87654 -13.49644 -13.30785 -13.27517 -13.03092 -12.89267 -12.75229 -12.16944 -12.15481 -12.12853 -11.93471 -11.73809 -11.49112 -11.27522 -10.99852 -10.76648 -10.47963 -10.08911 -9.58897 -9.09463 -8.27554 -6.34958 -0.85594 -0.47362 0.76276 1.41036 1.44167 1.45279 1.55102 2.07509 2.14554 2.19647 2.39204 2.95756 3.07683 3.22455 3.42915 3.49444 3.58972 3.74840 3.81816 4.05391 4.19678 4.35472 4.39025 4.43118 4.45933 4.48667 4.56921 4.67843 4.74529 4.76909 4.77441 4.82147 4.97690 5.06814 5.08717 5.17840 5.26456 5.34197 5.42991 5.44552 5.58161 5.65775 6.24128 6.28818 6.52181 6.73393 6.81938 7.18417 7.29546 8.89172 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.016412 B = 0.002797 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.617699 B =10006.941165 C =11675.602829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.330 6.330 3 C 0.167 3.833 4 C -0.195 4.195 5 C -0.030 4.030 6 C -0.163 4.163 7 C 0.018 3.982 8 C -0.218 4.218 9 C 0.559 3.441 10 O -0.565 6.565 11 N -0.709 5.709 12 C 0.146 3.854 13 C -0.014 4.014 14 C -0.538 4.538 15 H 0.028 0.972 16 C 0.001 3.999 17 N -0.952 5.952 18 Si 0.959 3.041 19 H -0.266 1.266 20 H -0.290 1.290 21 H -0.232 1.232 22 C 0.211 3.789 23 C -0.106 4.106 24 N -0.513 5.513 25 C 0.169 3.831 26 C -0.184 4.184 27 H 0.119 0.881 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.173 0.827 31 H 0.178 0.822 32 H 0.180 0.820 33 H 0.411 0.589 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.040 0.960 37 H 0.037 0.963 38 H 0.267 0.733 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.769 -27.385 -0.564 32.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.242 6.242 3 C 0.118 3.882 4 C -0.213 4.213 5 C -0.048 4.048 6 C -0.166 4.166 7 C -0.007 4.007 8 C -0.224 4.224 9 C 0.346 3.654 10 O -0.446 6.446 11 N -0.361 5.361 12 C 0.022 3.978 13 C -0.051 4.051 14 C -0.577 4.577 15 H 0.047 0.953 16 C -0.196 4.196 17 N -0.592 5.592 18 Si 0.781 3.219 19 H -0.191 1.191 20 H -0.216 1.216 21 H -0.154 1.154 22 C 0.058 3.942 23 C -0.163 4.163 24 N -0.223 5.223 25 C 0.048 3.952 26 C -0.204 4.204 27 H 0.137 0.863 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.190 0.810 31 H 0.195 0.805 32 H 0.197 0.803 33 H 0.249 0.751 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.472 -28.219 -0.637 32.681 hybrid contribution -0.848 1.382 0.090 1.625 sum -17.321 -26.837 -0.547 31.946 Atomic orbital electron populations 1.23506 0.75511 1.06092 1.03042 1.86080 1.24255 1.26389 1.87511 1.19094 0.91440 0.85458 0.92181 1.21476 1.02276 0.91055 1.06473 1.21317 0.91412 0.99683 0.92409 1.18935 0.96174 0.93005 1.08444 1.22348 0.92431 0.98790 0.87163 1.20613 0.95146 0.93883 1.12727 1.18213 0.86852 0.83956 0.76336 1.90718 1.15044 1.87489 1.51326 1.45931 1.11597 1.05360 1.73177 1.21091 0.95122 0.81200 1.00379 1.19667 0.95528 0.91779 0.98172 1.21254 0.94312 0.91377 1.50713 0.95325 1.26121 1.04982 0.94596 0.93874 1.70085 1.38683 0.98661 1.51755 0.85536 0.78078 0.78817 0.79420 1.19062 1.21569 1.15421 1.21693 0.97920 0.86593 0.87992 1.21024 0.87455 1.03724 1.04090 1.67886 1.09814 1.27379 1.17253 1.18828 0.88916 0.93200 0.94220 1.20001 0.92214 0.96646 1.11492 0.86317 0.90810 0.90824 0.80952 0.80493 0.80281 0.75135 0.93386 0.93335 0.94197 0.94456 0.92417 0.89963 0.89043 0.90363 0.84786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.80 113.37 1.11 1.17 16 2 O -0.33 -4.80 10.47 -91.00 -0.95 -5.76 16 3 C 0.17 2.76 6.67 22.55 0.15 2.91 16 4 C -0.19 -2.13 8.94 22.14 0.20 -1.93 16 5 C -0.03 -0.35 9.75 22.32 0.22 -0.14 16 6 C -0.16 -3.20 5.74 -21.27 -0.12 -3.32 16 7 C 0.02 0.36 9.37 23.01 0.22 0.58 16 8 C -0.22 -5.84 5.88 -20.00 -0.12 -5.96 16 9 C 0.56 17.77 7.69 86.73 0.67 18.44 16 10 O -0.56 -21.78 13.31 -3.94 -0.05 -21.83 16 11 N -0.71 -21.16 5.51 -466.13 -2.57 -23.73 16 12 C 0.15 5.65 5.61 86.38 0.48 6.14 16 13 C -0.01 -0.58 4.16 29.85 0.12 -0.45 16 14 C -0.54 -29.92 9.66 25.60 0.25 -29.67 16 15 H 0.03 1.80 7.99 -2.91 -0.02 1.77 16 16 C 0.00 0.07 5.47 84.66 0.46 0.53 16 17 N -0.95 -58.59 13.96 21.45 0.30 -58.29 16 18 Si 0.96 40.77 27.47 68.60 1.88 42.65 16 19 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 20 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 21 H -0.23 -8.48 6.54 99.48 0.65 -7.82 16 22 C 0.21 6.09 6.82 43.29 0.30 6.38 16 23 C -0.11 -2.94 8.82 71.24 0.63 -2.31 16 24 N -0.51 -14.79 10.20 -175.89 -1.79 -16.59 16 25 C 0.17 4.22 6.60 40.23 0.27 4.49 16 26 C -0.18 -4.06 9.93 22.65 0.22 -3.84 16 27 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 28 H 0.07 0.15 7.63 -2.39 -0.02 0.14 16 29 H 0.07 0.15 7.64 -2.38 -0.02 0.14 16 30 H 0.17 0.61 6.23 -2.91 -0.02 0.59 16 31 H 0.18 0.74 8.06 -2.91 -0.02 0.72 16 32 H 0.18 2.08 6.53 -2.91 -0.02 2.06 16 33 H 0.41 9.08 6.58 -92.71 -0.61 8.47 16 34 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.04 1.56 7.20 -2.39 -0.02 1.54 16 37 H 0.04 1.45 7.57 -2.39 -0.02 1.43 16 38 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 39 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.09 2.83 5.81 -2.39 -0.01 2.81 16 41 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.13 3.05 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -76.84 350.89 2.26 -74.58 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.39 Total: 15.94 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 5.05 Total: -6.98 kcal Atomic # 7 Polarization: -94.55 SS G_CDS: -4.06 Total: -98.61 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -1.01 Total: -27.58 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 1.88 Total: 42.65 kcal Total: -76.84 2.26 -74.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273067486.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.164 kcal (2) G-P(sol) polarization free energy of solvation -76.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds