Wall clock time and date at job start Tue Mar 31 2020 10:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33489 * 126.72353 * 2 1 4 4 N 1.20656 * 113.39269 * 180.26518 * 3 2 1 5 5 C 1.30871 * 112.10094 * 0.02562 * 4 3 2 6 6 C 1.48325 * 127.44513 * 179.97438 * 5 4 3 7 7 C 1.39382 * 120.12317 * 180.02562 * 6 5 4 8 8 C 1.37989 * 119.87924 * 180.02562 * 7 6 5 9 9 C 1.38351 * 120.11992 * 0.02890 * 8 7 6 10 10 C 1.38308 * 120.25202 * 359.94960 * 9 8 7 11 11 C 1.38032 * 120.12109 * 359.77065 * 10 9 8 12 12 C 1.50701 * 120.06449 * 180.28206 * 11 10 9 13 13 C 1.37215 * 126.71767 * 180.32418 * 2 1 3 14 14 C 1.47284 * 128.57773 * 359.70890 * 13 2 1 15 15 O 1.21617 * 119.99750 * 90.02841 * 14 13 2 16 16 N 1.34772 * 119.99785 * 270.02589 * 14 13 2 17 17 C 1.46493 * 120.00562 * 0.02562 * 16 14 13 18 18 C 1.46502 * 119.99528 * 180.02562 * 16 14 13 19 19 C 1.50701 * 109.47122 * 90.00410 * 18 16 14 20 20 H 1.07993 * 120.00112 * 359.97438 * 19 18 16 21 21 C 1.37885 * 119.99771 * 180.02562 * 19 18 16 22 22 N 1.31518 * 119.99544 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99999 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46674 * 90.00504 * 23 21 19 25 25 H 1.48501 * 109.46773 * 210.00320 * 23 21 19 26 26 H 1.48498 * 109.47218 * 330.00197 * 23 21 19 27 27 H 1.09004 * 109.46675 * 269.68386 * 1 2 3 28 28 H 1.09003 * 109.47034 * 29.67992 * 1 2 3 29 29 H 1.08995 * 109.47790 * 149.67982 * 1 2 3 30 30 H 1.08007 * 120.06188 * 0.02936 * 7 6 5 31 31 H 1.07998 * 119.94208 * 179.97438 * 8 7 6 32 32 H 1.07998 * 119.87358 * 179.97438 * 9 8 7 33 33 H 1.07995 * 119.93976 * 180.02562 * 10 9 8 34 34 H 1.09006 * 109.46533 * 270.24794 * 12 11 10 35 35 H 1.08997 * 109.47130 * 30.24716 * 12 11 10 36 36 H 1.08997 * 109.47323 * 150.24844 * 12 11 10 37 37 H 1.09000 * 109.47615 * 89.99632 * 17 16 14 38 38 H 1.09003 * 109.47394 * 209.99965 * 17 16 14 39 39 H 1.09004 * 109.47058 * 329.99931 * 17 16 14 40 40 H 1.09000 * 109.46981 * 210.00256 * 18 16 14 41 41 H 1.09000 * 109.47665 * 329.99816 * 18 16 14 42 42 H 0.97000 * 119.99338 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3052 1.0700 0.0000 4 7 3.4793 0.7918 -0.0051 5 6 3.6788 -0.5016 -0.0100 6 6 4.9801 -1.2133 -0.0175 7 6 5.0153 -2.6067 -0.0225 8 6 6.2288 -3.2637 -0.0290 9 6 7.4091 -2.5418 -0.0298 10 6 7.3802 -1.1591 -0.0253 11 6 6.1720 -0.4915 -0.0246 12 6 6.1421 1.0152 -0.0261 13 6 2.3274 -1.0999 -0.0062 14 6 1.9535 -2.5245 -0.0084 15 8 1.7954 -3.1100 -1.0626 16 7 1.7867 -3.1792 1.1577 17 6 1.9767 -2.4738 2.4275 18 6 1.4154 -4.5963 1.1555 19 6 2.6625 -5.4424 1.1492 20 1 3.6344 -4.9716 1.1467 21 6 2.5626 -6.8176 1.1456 22 7 3.6510 -7.5559 1.1396 23 14 0.8814 -7.6319 1.1492 24 1 0.4312 -7.8438 -0.2500 25 1 0.9671 -8.9409 1.8453 26 1 -0.0901 -6.7585 1.8551 27 1 -0.3633 -0.0057 1.0277 28 1 -0.3633 0.8929 -0.5089 29 1 -0.3634 -0.8870 -0.5188 30 1 4.0945 -3.1712 -0.0215 31 1 6.2572 -4.3433 -0.0325 32 1 8.3565 -3.0601 -0.0344 33 1 8.3045 -0.6007 -0.0264 34 1 6.1404 1.3795 1.0013 35 1 7.0218 1.3956 -0.5451 36 1 5.2423 1.3603 -0.5354 37 1 1.0298 -2.0383 2.7465 38 1 2.3270 -3.1758 3.1843 39 1 2.7147 -1.6824 2.2967 40 1 0.8293 -4.8198 2.0469 41 1 0.8232 -4.8155 0.2670 42 1 3.5807 -8.5233 1.1375 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280588431.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:45 Heat of formation + Delta-G solvation = 39.277415 kcal Electronic energy + Delta-G solvation = -26750.189264 eV Core-core repulsion = 23084.169787 eV Total energy + Delta-G solvation = -3666.019477 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.95003 -40.89328 -40.25308 -36.75250 -35.51527 -34.90157 -34.47822 -33.50996 -31.58683 -30.65155 -28.98111 -27.97551 -27.57309 -26.18823 -24.59546 -23.41975 -22.86408 -21.15337 -20.35866 -19.15232 -18.96575 -18.58987 -17.87213 -17.43921 -17.02388 -16.41859 -16.27739 -16.08696 -15.59829 -14.99940 -14.89446 -14.72123 -14.34841 -14.32187 -14.23765 -14.05424 -13.82853 -13.78609 -13.72213 -13.32978 -13.13698 -12.99547 -12.88419 -12.48445 -12.47636 -12.14295 -12.08553 -11.85966 -11.75943 -11.65214 -11.18094 -10.81246 -10.40968 -9.82766 -9.56250 -9.52891 -8.31499 -6.36716 -0.32715 0.27132 0.31708 1.18282 1.33173 1.34039 1.38023 1.45630 1.78992 2.23788 2.32233 2.72379 2.79490 3.02613 3.15441 3.59354 3.81668 3.85683 3.89440 4.06167 4.20440 4.23859 4.31008 4.39011 4.49724 4.53782 4.62469 4.70846 4.74865 4.76162 4.78234 4.81935 4.82516 4.89853 4.95967 5.08664 5.28140 5.40051 5.42625 5.48160 5.49907 5.54115 5.92431 6.22913 6.44515 6.65291 7.08912 7.09819 7.28275 8.84653 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.012425 B = 0.005716 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.017816 B = 4896.935381 C = 6726.063095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.039 3.961 3 O 0.109 5.891 4 N -0.344 5.344 5 C 0.085 3.915 6 C -0.056 4.056 7 C -0.106 4.106 8 C -0.139 4.139 9 C -0.093 4.093 10 C -0.119 4.119 11 C -0.062 4.062 12 C -0.118 4.118 13 C -0.263 4.263 14 C 0.593 3.407 15 O -0.578 6.578 16 N -0.587 5.587 17 C 0.083 3.917 18 C 0.222 3.778 19 C -0.538 4.538 20 H 0.036 0.964 21 C 0.016 3.984 22 N -0.941 5.941 23 Si 0.943 3.057 24 H -0.278 1.278 25 H -0.278 1.278 26 H -0.234 1.234 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.157 0.843 33 H 0.168 0.832 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.025 0.975 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.568 19.216 2.139 19.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.024 4.024 3 O 0.046 5.954 4 N -0.049 5.049 5 C -0.074 4.074 6 C -0.057 4.057 7 C -0.125 4.125 8 C -0.157 4.157 9 C -0.111 4.111 10 C -0.137 4.137 11 C -0.063 4.063 12 C -0.174 4.174 13 C -0.271 4.271 14 C 0.380 3.620 15 O -0.459 6.459 16 N -0.316 5.316 17 C -0.060 4.060 18 C 0.100 3.900 19 C -0.576 4.576 20 H 0.054 0.946 21 C -0.183 4.183 22 N -0.581 5.581 23 Si 0.766 3.234 24 H -0.203 1.203 25 H -0.203 1.203 26 H -0.157 1.157 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.101 0.899 30 H 0.119 0.881 31 H 0.128 0.872 32 H 0.174 0.826 33 H 0.185 0.815 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.043 0.957 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.851 19.824 1.649 19.911 hybrid contribution -0.513 -2.268 -0.222 2.336 sum -1.364 17.556 1.427 17.667 Atomic orbital electron populations 1.20740 0.79823 1.06203 1.06634 1.25066 0.97226 0.83423 0.96720 1.84472 1.10992 1.32867 1.67105 1.73919 0.95863 1.14445 1.20708 1.22999 0.93058 0.89022 1.02273 1.17718 0.89554 0.91789 1.06660 1.21381 0.99162 0.93670 0.98325 1.21184 0.92918 1.00210 1.01396 1.21608 0.98098 0.94720 0.96672 1.21374 0.97940 0.93958 1.00406 1.20348 0.91443 0.97730 0.96819 1.21085 1.04364 0.88530 1.03449 1.21836 0.93401 0.95044 1.16794 1.17094 0.76647 0.84560 0.83675 1.90771 1.53289 1.69179 1.32644 1.47827 1.66366 1.11355 1.06093 1.21870 1.02459 0.96985 0.84646 1.19508 0.95278 0.77235 0.97945 1.21530 0.93094 0.91721 1.51284 0.94575 1.25776 1.00913 0.97740 0.93849 1.70043 1.30426 1.05869 1.51726 0.85792 0.80053 0.78664 0.78935 1.20328 1.20302 1.15714 0.85904 0.85903 0.89859 0.88131 0.87198 0.82567 0.81456 0.90175 0.89057 0.90396 0.89127 0.90720 0.92280 0.92278 0.95667 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 10.32 71.24 0.74 -0.48 16 2 C 0.04 1.01 7.53 25.45 0.19 1.20 16 3 O 0.11 2.79 11.05 77.02 0.85 3.64 16 4 N -0.34 -10.31 8.71 -45.01 -0.39 -10.70 16 5 C 0.08 2.99 6.90 44.50 0.31 3.30 16 6 C -0.06 -2.08 5.88 -20.05 -0.12 -2.20 16 7 C -0.11 -4.56 9.57 22.49 0.22 -4.34 16 8 C -0.14 -5.43 10.03 22.24 0.22 -5.20 16 9 C -0.09 -2.69 10.04 22.31 0.22 -2.47 16 10 C -0.12 -3.03 9.69 22.24 0.22 -2.81 16 11 C -0.06 -1.83 5.91 -19.65 -0.12 -1.95 16 12 C -0.12 -2.72 9.21 71.24 0.66 -2.06 16 13 C -0.26 -9.31 4.38 -18.61 -0.08 -9.39 16 14 C 0.59 25.62 4.81 86.62 0.42 26.04 16 15 O -0.58 -30.38 16.61 -4.09 -0.07 -30.44 16 16 N -0.59 -24.29 2.79 -855.22 -2.38 -26.67 16 17 C 0.08 2.60 10.26 127.77 1.31 3.91 16 18 C 0.22 10.57 4.23 85.63 0.36 10.93 16 19 C -0.54 -31.01 9.94 25.60 0.25 -30.75 16 20 H 0.04 2.33 7.28 -2.91 -0.02 2.31 16 21 C 0.02 0.91 5.47 84.66 0.46 1.37 16 22 N -0.94 -58.50 13.96 21.45 0.30 -58.21 16 23 Si 0.94 43.41 27.47 68.60 1.88 45.29 16 24 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 25 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 26 H -0.23 -9.51 6.54 99.48 0.65 -8.86 16 27 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 1.60 8.10 -2.39 -0.02 1.58 16 30 H 0.10 5.14 4.41 -2.91 -0.01 5.13 16 31 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 32 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 33 H 0.17 2.80 8.06 -2.91 -0.02 2.77 16 34 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.09 1.58 8.09 -2.39 -0.02 1.56 16 36 H 0.08 2.03 5.24 -2.39 -0.01 2.01 16 37 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 39 H 0.06 1.84 6.71 -2.38 -0.02 1.83 16 40 H 0.06 2.52 7.13 -2.39 -0.02 2.51 16 41 H 0.03 1.28 6.85 -2.39 -0.02 1.26 16 42 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -78.89 352.45 6.44 -72.45 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.99 Total: 19.56 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: 5.26 Total: -14.92 kcal Atomic # 7 Polarization: -93.10 SS G_CDS: -2.48 Total: -95.57 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: 0.78 Total: -26.80 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.88 Total: 45.29 kcal Total: -78.89 6.44 -72.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280588431.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.725 kcal (2) G-P(sol) polarization free energy of solvation -78.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds