Wall clock time and date at job start Tue Mar 31 2020 10:50:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 O 1.33489 * 126.72353 * 2 1
4 4 N 1.20656 * 113.39269 * 180.26518 * 3 2 1
5 5 C 1.30871 * 112.10094 * 0.02562 * 4 3 2
6 6 C 1.48325 * 127.44513 * 179.97438 * 5 4 3
7 7 C 1.39382 * 120.12317 * 180.02562 * 6 5 4
8 8 C 1.37989 * 119.87924 * 180.02562 * 7 6 5
9 9 C 1.38351 * 120.11992 * 0.02890 * 8 7 6
10 10 C 1.38308 * 120.25202 * 359.94960 * 9 8 7
11 11 C 1.38032 * 120.12109 * 359.77065 * 10 9 8
12 12 C 1.50701 * 120.06449 * 180.28206 * 11 10 9
13 13 C 1.37215 * 126.71767 * 180.32418 * 2 1 3
14 14 C 1.47284 * 128.57773 * 359.70890 * 13 2 1
15 15 O 1.21617 * 119.99750 * 90.02841 * 14 13 2
16 16 N 1.34772 * 119.99785 * 270.02589 * 14 13 2
17 17 C 1.46493 * 120.00562 * 0.02562 * 16 14 13
18 18 C 1.46502 * 119.99528 * 180.02562 * 16 14 13
19 19 C 1.50701 * 109.47122 * 90.00410 * 18 16 14
20 20 H 1.07993 * 120.00112 * 359.97438 * 19 18 16
21 21 C 1.37885 * 119.99771 * 180.02562 * 19 18 16
22 22 N 1.31518 * 119.99544 * 179.97438 * 21 19 18
23 23 Si 1.86802 * 119.99999 * 359.97438 * 21 19 18
24 24 H 1.48501 * 109.46674 * 90.00504 * 23 21 19
25 25 H 1.48501 * 109.46773 * 210.00320 * 23 21 19
26 26 H 1.48498 * 109.47218 * 330.00197 * 23 21 19
27 27 H 1.09004 * 109.46675 * 269.68386 * 1 2 3
28 28 H 1.09003 * 109.47034 * 29.67992 * 1 2 3
29 29 H 1.08995 * 109.47790 * 149.67982 * 1 2 3
30 30 H 1.08007 * 120.06188 * 0.02936 * 7 6 5
31 31 H 1.07998 * 119.94208 * 179.97438 * 8 7 6
32 32 H 1.07998 * 119.87358 * 179.97438 * 9 8 7
33 33 H 1.07995 * 119.93976 * 180.02562 * 10 9 8
34 34 H 1.09006 * 109.46533 * 270.24794 * 12 11 10
35 35 H 1.08997 * 109.47130 * 30.24716 * 12 11 10
36 36 H 1.08997 * 109.47323 * 150.24844 * 12 11 10
37 37 H 1.09000 * 109.47615 * 89.99632 * 17 16 14
38 38 H 1.09003 * 109.47394 * 209.99965 * 17 16 14
39 39 H 1.09004 * 109.47058 * 329.99931 * 17 16 14
40 40 H 1.09000 * 109.46981 * 210.00256 * 18 16 14
41 41 H 1.09000 * 109.47665 * 329.99816 * 18 16 14
42 42 H 0.97000 * 119.99338 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.3052 1.0700 0.0000
4 7 3.4793 0.7918 -0.0051
5 6 3.6788 -0.5016 -0.0100
6 6 4.9801 -1.2133 -0.0175
7 6 5.0153 -2.6067 -0.0225
8 6 6.2288 -3.2637 -0.0290
9 6 7.4091 -2.5418 -0.0298
10 6 7.3802 -1.1591 -0.0253
11 6 6.1720 -0.4915 -0.0246
12 6 6.1421 1.0152 -0.0261
13 6 2.3274 -1.0999 -0.0062
14 6 1.9535 -2.5245 -0.0084
15 8 1.7954 -3.1100 -1.0626
16 7 1.7867 -3.1792 1.1577
17 6 1.9767 -2.4738 2.4275
18 6 1.4154 -4.5963 1.1555
19 6 2.6625 -5.4424 1.1492
20 1 3.6344 -4.9716 1.1467
21 6 2.5626 -6.8176 1.1456
22 7 3.6510 -7.5559 1.1396
23 14 0.8814 -7.6319 1.1492
24 1 0.4312 -7.8438 -0.2500
25 1 0.9671 -8.9409 1.8453
26 1 -0.0901 -6.7585 1.8551
27 1 -0.3633 -0.0057 1.0277
28 1 -0.3633 0.8929 -0.5089
29 1 -0.3634 -0.8870 -0.5188
30 1 4.0945 -3.1712 -0.0215
31 1 6.2572 -4.3433 -0.0325
32 1 8.3565 -3.0601 -0.0344
33 1 8.3045 -0.6007 -0.0264
34 1 6.1404 1.3795 1.0013
35 1 7.0218 1.3956 -0.5451
36 1 5.2423 1.3603 -0.5354
37 1 1.0298 -2.0383 2.7465
38 1 2.3270 -3.1758 3.1843
39 1 2.7147 -1.6824 2.2967
40 1 0.8293 -4.8198 2.0469
41 1 0.8232 -4.8155 0.2670
42 1 3.5807 -8.5233 1.1375
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000280588431.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:50:45
Heat of formation + Delta-G solvation = 39.277415 kcal
Electronic energy + Delta-G solvation = -26750.189264 eV
Core-core repulsion = 23084.169787 eV
Total energy + Delta-G solvation = -3666.019477 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.142 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-45.95003 -40.89328 -40.25308 -36.75250 -35.51527 -34.90157 -34.47822 -33.50996
-31.58683 -30.65155 -28.98111 -27.97551 -27.57309 -26.18823 -24.59546 -23.41975
-22.86408 -21.15337 -20.35866 -19.15232 -18.96575 -18.58987 -17.87213 -17.43921
-17.02388 -16.41859 -16.27739 -16.08696 -15.59829 -14.99940 -14.89446 -14.72123
-14.34841 -14.32187 -14.23765 -14.05424 -13.82853 -13.78609 -13.72213 -13.32978
-13.13698 -12.99547 -12.88419 -12.48445 -12.47636 -12.14295 -12.08553 -11.85966
-11.75943 -11.65214 -11.18094 -10.81246 -10.40968 -9.82766 -9.56250 -9.52891
-8.31499 -6.36716 -0.32715 0.27132 0.31708 1.18282 1.33173 1.34039
1.38023 1.45630 1.78992 2.23788 2.32233 2.72379 2.79490 3.02613
3.15441 3.59354 3.81668 3.85683 3.89440 4.06167 4.20440 4.23859
4.31008 4.39011 4.49724 4.53782 4.62469 4.70846 4.74865 4.76162
4.78234 4.81935 4.82516 4.89853 4.95967 5.08664 5.28140 5.40051
5.42625 5.48160 5.49907 5.54115 5.92431 6.22913 6.44515 6.65291
7.08912 7.09819 7.28275 8.84653
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.012425 B = 0.005716 C = 0.004162
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2253.017816 B = 4896.935381 C = 6726.063095
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 C 0.039 3.961
3 O 0.109 5.891
4 N -0.344 5.344
5 C 0.085 3.915
6 C -0.056 4.056
7 C -0.106 4.106
8 C -0.139 4.139
9 C -0.093 4.093
10 C -0.119 4.119
11 C -0.062 4.062
12 C -0.118 4.118
13 C -0.263 4.263
14 C 0.593 3.407
15 O -0.578 6.578
16 N -0.587 5.587
17 C 0.083 3.917
18 C 0.222 3.778
19 C -0.538 4.538
20 H 0.036 0.964
21 C 0.016 3.984
22 N -0.941 5.941
23 Si 0.943 3.057
24 H -0.278 1.278
25 H -0.278 1.278
26 H -0.234 1.234
27 H 0.123 0.877
28 H 0.123 0.877
29 H 0.083 0.917
30 H 0.101 0.899
31 H 0.110 0.890
32 H 0.157 0.843
33 H 0.168 0.832
34 H 0.080 0.920
35 H 0.091 0.909
36 H 0.078 0.922
37 H 0.090 0.910
38 H 0.074 0.926
39 H 0.058 0.942
40 H 0.059 0.941
41 H 0.025 0.975
42 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.568 19.216 2.139 19.398
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.024 4.024
3 O 0.046 5.954
4 N -0.049 5.049
5 C -0.074 4.074
6 C -0.057 4.057
7 C -0.125 4.125
8 C -0.157 4.157
9 C -0.111 4.111
10 C -0.137 4.137
11 C -0.063 4.063
12 C -0.174 4.174
13 C -0.271 4.271
14 C 0.380 3.620
15 O -0.459 6.459
16 N -0.316 5.316
17 C -0.060 4.060
18 C 0.100 3.900
19 C -0.576 4.576
20 H 0.054 0.946
21 C -0.183 4.183
22 N -0.581 5.581
23 Si 0.766 3.234
24 H -0.203 1.203
25 H -0.203 1.203
26 H -0.157 1.157
27 H 0.141 0.859
28 H 0.141 0.859
29 H 0.101 0.899
30 H 0.119 0.881
31 H 0.128 0.872
32 H 0.174 0.826
33 H 0.185 0.815
34 H 0.098 0.902
35 H 0.109 0.891
36 H 0.096 0.904
37 H 0.109 0.891
38 H 0.093 0.907
39 H 0.077 0.923
40 H 0.077 0.923
41 H 0.043 0.957
42 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -0.851 19.824 1.649 19.911
hybrid contribution -0.513 -2.268 -0.222 2.336
sum -1.364 17.556 1.427 17.667
Atomic orbital electron populations
1.20740 0.79823 1.06203 1.06634 1.25066 0.97226 0.83423 0.96720
1.84472 1.10992 1.32867 1.67105 1.73919 0.95863 1.14445 1.20708
1.22999 0.93058 0.89022 1.02273 1.17718 0.89554 0.91789 1.06660
1.21381 0.99162 0.93670 0.98325 1.21184 0.92918 1.00210 1.01396
1.21608 0.98098 0.94720 0.96672 1.21374 0.97940 0.93958 1.00406
1.20348 0.91443 0.97730 0.96819 1.21085 1.04364 0.88530 1.03449
1.21836 0.93401 0.95044 1.16794 1.17094 0.76647 0.84560 0.83675
1.90771 1.53289 1.69179 1.32644 1.47827 1.66366 1.11355 1.06093
1.21870 1.02459 0.96985 0.84646 1.19508 0.95278 0.77235 0.97945
1.21530 0.93094 0.91721 1.51284 0.94575 1.25776 1.00913 0.97740
0.93849 1.70043 1.30426 1.05869 1.51726 0.85792 0.80053 0.78664
0.78935 1.20328 1.20302 1.15714 0.85904 0.85903 0.89859 0.88131
0.87198 0.82567 0.81456 0.90175 0.89057 0.90396 0.89127 0.90720
0.92280 0.92278 0.95667 0.92382
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.21 10.32 71.24 0.74 -0.48 16
2 C 0.04 1.01 7.53 25.45 0.19 1.20 16
3 O 0.11 2.79 11.05 77.02 0.85 3.64 16
4 N -0.34 -10.31 8.71 -45.01 -0.39 -10.70 16
5 C 0.08 2.99 6.90 44.50 0.31 3.30 16
6 C -0.06 -2.08 5.88 -20.05 -0.12 -2.20 16
7 C -0.11 -4.56 9.57 22.49 0.22 -4.34 16
8 C -0.14 -5.43 10.03 22.24 0.22 -5.20 16
9 C -0.09 -2.69 10.04 22.31 0.22 -2.47 16
10 C -0.12 -3.03 9.69 22.24 0.22 -2.81 16
11 C -0.06 -1.83 5.91 -19.65 -0.12 -1.95 16
12 C -0.12 -2.72 9.21 71.24 0.66 -2.06 16
13 C -0.26 -9.31 4.38 -18.61 -0.08 -9.39 16
14 C 0.59 25.62 4.81 86.62 0.42 26.04 16
15 O -0.58 -30.38 16.61 -4.09 -0.07 -30.44 16
16 N -0.59 -24.29 2.79 -855.22 -2.38 -26.67 16
17 C 0.08 2.60 10.26 127.77 1.31 3.91 16
18 C 0.22 10.57 4.23 85.63 0.36 10.93 16
19 C -0.54 -31.01 9.94 25.60 0.25 -30.75 16
20 H 0.04 2.33 7.28 -2.91 -0.02 2.31 16
21 C 0.02 0.91 5.47 84.66 0.46 1.37 16
22 N -0.94 -58.50 13.96 21.45 0.30 -58.21 16
23 Si 0.94 43.41 27.47 68.60 1.88 45.29 16
24 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16
25 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16
26 H -0.23 -9.51 6.54 99.48 0.65 -8.86 16
27 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16
28 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16
29 H 0.08 1.60 8.10 -2.39 -0.02 1.58 16
30 H 0.10 5.14 4.41 -2.91 -0.01 5.13 16
31 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16
32 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16
33 H 0.17 2.80 8.06 -2.91 -0.02 2.77 16
34 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16
35 H 0.09 1.58 8.09 -2.39 -0.02 1.56 16
36 H 0.08 2.03 5.24 -2.39 -0.01 2.01 16
37 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16
38 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16
39 H 0.06 1.84 6.71 -2.38 -0.02 1.83 16
40 H 0.06 2.52 7.13 -2.39 -0.02 2.51 16
41 H 0.03 1.28 6.85 -2.39 -0.02 1.26 16
42 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16
Total: -1.00 -78.89 352.45 6.44 -72.45
By element:
Atomic # 1 Polarization: 18.57 SS G_CDS: 0.99 Total: 19.56 kcal
Atomic # 6 Polarization: -20.18 SS G_CDS: 5.26 Total: -14.92 kcal
Atomic # 7 Polarization: -93.10 SS G_CDS: -2.48 Total: -95.57 kcal
Atomic # 8 Polarization: -27.59 SS G_CDS: 0.78 Total: -26.80 kcal
Atomic # 14 Polarization: 43.41 SS G_CDS: 1.88 Total: 45.29 kcal
Total: -78.89 6.44 -72.45 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000280588431.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 111.725 kcal
(2) G-P(sol) polarization free energy of solvation -78.891 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.834 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.443 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.448 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.277 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds