Wall clock time and date at job start Tue Mar 31 2020 10:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47162 * 199.68923 * 3 2 1 5 5 C 1.37100 * 120.00062 * 86.75483 * 4 3 2 6 6 H 1.07994 * 119.99754 * 167.36197 * 5 4 3 7 7 C 1.38945 * 119.99790 * 347.36264 * 5 4 3 8 8 N 1.31415 * 120.00332 * 334.06542 * 7 5 4 9 9 Si 1.86801 * 120.00144 * 154.07048 * 7 5 4 10 10 H 1.48509 * 109.47088 * 89.99736 * 9 7 5 11 11 H 1.48498 * 109.47454 * 209.99826 * 9 7 5 12 12 H 1.48502 * 109.47096 * 330.00056 * 9 7 5 13 13 C 1.34775 * 119.99939 * 266.75984 * 4 3 2 14 14 O 1.21292 * 120.00034 * 184.18399 * 13 4 3 15 15 C 1.50706 * 120.00149 * 4.18176 * 13 4 3 16 16 H 1.08998 * 109.46963 * 30.17017 * 15 13 4 17 17 C 1.52994 * 109.47009 * 270.17162 * 15 13 4 18 18 N 1.46503 * 109.47029 * 150.16935 * 15 13 4 19 19 C 1.34772 * 119.99648 * 204.99837 * 18 15 13 20 20 O 1.21553 * 120.00349 * 0.02562 * 19 18 15 21 21 C 1.47852 * 119.99806 * 180.27557 * 19 18 15 22 22 C 1.39590 * 120.14154 * 359.45064 * 21 19 18 23 23 C 1.37939 * 119.85512 * 179.78866 * 22 21 19 24 24 C 1.38388 * 120.14156 * 0.48858 * 23 22 21 25 25 C 1.38338 * 120.28805 * 359.74114 * 24 23 22 26 26 C 1.50700 * 119.92464 * 180.02562 * 25 24 23 27 27 C 1.37975 * 120.14832 * 0.02562 * 25 24 23 28 28 H 4.40643 * 5.51335 * 179.97438 * 4 1 2 29 29 H 1.08996 * 109.47379 * 79.69113 * 3 2 1 30 30 H 1.08997 * 109.47358 * 319.68903 * 3 2 1 31 31 H 0.96996 * 120.00720 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.46979 * 182.65217 * 17 15 13 33 33 H 1.09001 * 109.46929 * 302.64975 * 17 15 13 34 34 H 1.08998 * 109.47270 * 62.65277 * 17 15 13 35 35 H 0.96999 * 119.99704 * 25.00395 * 18 15 13 36 36 H 1.08001 * 120.07896 * 0.02562 * 22 21 19 37 37 H 1.08000 * 119.93421 * 180.23107 * 23 22 21 38 38 H 1.07994 * 119.85524 * 179.76810 * 24 23 22 39 39 H 1.09004 * 109.47548 * 270.02172 * 26 25 24 40 40 H 1.08995 * 109.47424 * 30.02500 * 26 25 24 41 41 H 1.08999 * 109.47233 * 150.02296 * 26 25 24 42 42 H 1.08003 * 120.07219 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3014 0.4654 5 6 3.2988 1.5317 1.8068 6 1 3.8438 2.4015 2.1422 7 6 2.7647 0.6459 2.7346 8 7 1.7199 -0.0859 2.4187 9 14 3.5319 0.4953 4.4311 10 1 2.8861 1.4631 5.3541 11 1 3.3340 -0.8845 4.9432 12 1 4.9853 0.7877 4.3449 13 6 3.4201 2.2716 -0.4252 14 8 3.8954 3.3213 -0.0465 15 6 3.1499 2.0522 -1.8915 16 1 2.2997 1.3801 -2.0077 17 6 4.3838 1.4324 -2.5503 18 7 2.8484 3.3359 -2.5299 19 6 2.1063 3.3714 -3.6543 20 8 1.6868 2.3384 -4.1386 21 6 1.8071 4.6664 -4.3020 22 6 2.2821 5.8550 -3.7450 23 6 2.0031 7.0595 -4.3566 24 6 1.2456 7.0920 -5.5143 25 6 0.7679 5.9181 -6.0687 26 6 -0.0557 5.9630 -7.3299 27 6 1.0438 4.7062 -5.4696 28 1 -1.0502 -0.0004 -0.0003 29 1 3.0094 -0.1831 -1.0110 30 1 3.0097 -0.7828 0.6648 31 1 1.3468 -0.7040 3.0664 32 1 4.2056 1.3172 -3.6194 33 1 5.2446 2.0824 -2.3933 34 1 4.5803 0.4560 -2.1074 35 1 3.1830 4.1602 -2.1432 36 1 2.8700 5.8313 -2.8394 37 1 2.3731 7.9795 -3.9288 38 1 1.0269 8.0380 -5.9872 39 1 -1.1106 6.0572 -7.0720 40 1 0.2487 6.8188 -7.9325 41 1 0.0989 5.0455 -7.8977 42 1 0.6699 3.7905 -5.9033 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281290505.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:00 Heat of formation + Delta-G solvation = 23.064583 kcal Electronic energy + Delta-G solvation = -25582.761904 eV Core-core repulsion = 21916.039386 eV Total energy + Delta-G solvation = -3666.722519 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.26593 -39.11140 -38.08677 -35.48563 -34.43566 -33.12520 -32.07259 -31.39902 -31.24511 -29.93726 -27.02720 -26.47646 -25.32627 -24.34268 -22.63245 -21.90783 -19.99031 -19.31647 -17.98893 -17.69115 -16.60492 -16.44422 -15.90970 -15.67857 -15.01878 -14.80386 -14.73053 -14.45651 -14.13000 -13.93236 -13.80913 -13.59082 -13.15670 -13.10361 -12.64700 -12.42995 -12.34130 -12.09646 -11.84191 -11.72437 -11.71096 -11.66879 -11.21768 -11.11848 -10.99357 -10.59100 -10.36124 -9.75606 -9.29296 -9.27049 -9.10817 -8.95353 -8.87373 -8.79958 -8.42551 -8.00354 -6.36970 -3.90624 0.81249 1.23789 2.94057 3.06562 3.20991 3.25349 3.28598 3.70833 3.84994 3.87409 4.11136 4.20529 4.62352 4.68340 4.76147 4.78476 4.97874 5.03004 5.12996 5.22189 5.39905 5.43584 5.48401 5.55624 5.58399 5.60508 5.69459 5.81784 5.91637 5.99596 6.13692 6.20124 6.24878 6.28750 6.38476 6.47275 6.62866 6.69441 6.79236 7.06738 7.49376 7.77931 7.91483 8.30751 8.43366 8.94707 9.01213 9.25324 9.75365 10.56543 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.021698 B = 0.003201 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.114826 B = 8743.909977 C = 9141.680357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.110 4.110 3 C 0.230 3.770 4 N -0.427 5.427 5 C -0.324 4.324 6 H 0.108 0.892 7 C 0.036 3.964 8 N -0.846 5.846 9 Si 0.918 3.082 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.268 1.268 13 C 0.441 3.559 14 O -0.585 6.585 15 C 0.128 3.872 16 H 0.102 0.898 17 C -0.154 4.154 18 N -0.699 5.699 19 C 0.556 3.444 20 O -0.542 6.542 21 C -0.123 4.123 22 C -0.090 4.090 23 C -0.124 4.124 24 C -0.100 4.100 25 C -0.099 4.099 26 C -0.113 4.113 27 C -0.062 4.062 28 H 0.197 0.803 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.270 0.730 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.407 0.593 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.734 7.532 -14.486 16.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.112 4.112 3 C 0.106 3.894 4 N -0.144 5.144 5 C -0.450 4.450 6 H 0.126 0.874 7 C -0.170 4.170 8 N -0.482 5.482 9 Si 0.744 3.256 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.193 1.193 13 C 0.229 3.771 14 O -0.470 6.470 15 C 0.020 3.980 16 H 0.119 0.881 17 C -0.213 4.213 18 N -0.351 5.351 19 C 0.343 3.657 20 O -0.420 6.420 21 C -0.126 4.126 22 C -0.109 4.109 23 C -0.142 4.142 24 C -0.118 4.118 25 C -0.099 4.099 26 C -0.170 4.170 27 C -0.081 4.081 28 H 0.214 0.786 29 H 0.086 0.914 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.245 0.755 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.142 0.858 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.877 7.120 -14.474 16.154 hybrid contribution 0.032 0.166 1.343 1.353 sum -0.846 7.286 -13.131 15.041 Atomic orbital electron populations 1.24158 0.95267 1.01250 1.06619 1.22760 0.94036 0.99196 0.95225 1.18338 0.85013 0.88021 0.97983 1.43701 1.54760 1.09681 1.06298 1.19634 1.34373 1.11642 0.79395 0.87440 1.25297 0.94580 0.97122 1.00024 1.70159 1.16966 1.24920 1.36186 0.86082 0.80112 0.77571 0.81858 1.20373 1.20757 1.19286 1.19804 0.85914 0.84748 0.86637 1.90497 1.49593 1.26847 1.80077 1.20830 0.99616 0.85785 0.91817 0.88054 1.22084 0.97207 1.01117 1.00915 1.45694 1.52968 1.10328 1.26150 1.18240 0.78100 0.88738 0.80593 1.90748 1.52791 1.34473 1.64018 1.19984 1.02059 0.93067 0.97533 1.21435 0.98249 0.91917 0.99279 1.21097 0.99187 0.97858 0.96012 1.21220 0.97009 0.97766 0.95817 1.19890 0.99425 0.92869 0.97742 1.20786 0.99164 1.02898 0.94110 1.21157 0.95232 0.98117 0.93563 0.78603 0.91386 0.88067 0.91923 0.91774 0.91851 0.91114 0.75519 0.85218 0.85358 0.85778 0.91044 0.91497 0.91302 0.84659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.57 19.08 29.55 0.56 -5.01 16 2 C -0.11 -2.56 10.45 -37.13 -0.39 -2.94 16 3 C 0.23 5.07 4.82 -6.83 -0.03 5.03 16 4 N -0.43 -10.56 2.59 -117.93 -0.31 -10.86 16 5 C -0.32 -8.68 9.37 -14.93 -0.14 -8.82 16 6 H 0.11 3.03 7.34 -52.49 -0.39 2.65 16 7 C 0.04 0.91 4.83 -17.47 -0.08 0.82 16 8 N -0.85 -21.75 9.00 55.50 0.50 -21.25 16 9 Si 0.92 19.94 29.62 -169.99 -5.04 14.90 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 12 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 13 C 0.44 10.37 6.80 -10.98 -0.07 10.30 16 14 O -0.59 -15.13 15.71 5.55 0.09 -15.05 16 15 C 0.13 2.50 2.12 -69.08 -0.15 2.35 16 16 H 0.10 2.11 5.80 -51.93 -0.30 1.81 16 17 C -0.15 -2.54 9.30 37.15 0.35 -2.20 16 18 N -0.70 -12.52 5.01 -55.88 -0.28 -12.80 16 19 C 0.56 9.74 7.74 -12.33 -0.10 9.64 16 20 O -0.54 -10.83 16.01 5.32 0.09 -10.75 16 21 C -0.12 -1.79 5.87 -104.97 -0.62 -2.40 16 22 C -0.09 -1.12 9.54 -39.19 -0.37 -1.49 16 23 C -0.12 -1.27 10.03 -39.64 -0.40 -1.67 16 24 C -0.10 -0.96 9.69 -39.49 -0.38 -1.34 16 25 C -0.10 -1.04 5.87 -104.68 -0.61 -1.65 16 26 C -0.11 -0.86 10.01 36.01 0.36 -0.49 16 27 C -0.06 -0.80 9.24 -39.19 -0.36 -1.16 16 28 H 0.20 3.60 7.80 -54.08 -0.42 3.18 16 29 H 0.07 1.28 5.31 -51.93 -0.28 1.00 16 30 H 0.10 2.29 6.87 -51.93 -0.36 1.93 16 31 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.08 7.02 -51.93 -0.36 0.71 16 35 H 0.41 6.95 5.88 -40.82 -0.24 6.71 16 36 H 0.13 1.53 6.41 -52.49 -0.34 1.19 16 37 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 41 H 0.07 0.49 8.08 -51.93 -0.42 0.08 16 42 H 0.14 1.76 7.65 -52.48 -0.40 1.36 16 LS Contribution 359.13 15.07 5.41 5.41 Total: -1.00 -31.86 359.13 -7.15 -39.01 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -5.17 Total: 12.43 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -2.44 Total: -1.04 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: -0.09 Total: -44.91 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: 0.17 Total: -25.80 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.04 Total: 14.90 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.86 -7.15 -39.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281290505.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.075 kcal (2) G-P(sol) polarization free energy of solvation -31.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds