Wall clock time and date at job start Tue Mar 31 2020 10:58:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17401 * 1
3 3 C 1.47195 * 179.97438 * 2 1
4 4 N 1.46506 * 109.47162 * 199.68923 * 3 2 1
5 5 C 1.37100 * 120.00062 * 86.75483 * 4 3 2
6 6 H 1.07994 * 119.99754 * 167.36197 * 5 4 3
7 7 C 1.38945 * 119.99790 * 347.36264 * 5 4 3
8 8 N 1.31415 * 120.00332 * 334.06542 * 7 5 4
9 9 Si 1.86801 * 120.00144 * 154.07048 * 7 5 4
10 10 H 1.48509 * 109.47088 * 89.99736 * 9 7 5
11 11 H 1.48498 * 109.47454 * 209.99826 * 9 7 5
12 12 H 1.48502 * 109.47096 * 330.00056 * 9 7 5
13 13 C 1.34775 * 119.99939 * 266.75984 * 4 3 2
14 14 O 1.21292 * 120.00034 * 184.18399 * 13 4 3
15 15 C 1.50706 * 120.00149 * 4.18176 * 13 4 3
16 16 H 1.08998 * 109.46963 * 30.17017 * 15 13 4
17 17 C 1.52994 * 109.47009 * 270.17162 * 15 13 4
18 18 N 1.46503 * 109.47029 * 150.16935 * 15 13 4
19 19 C 1.34772 * 119.99648 * 204.99837 * 18 15 13
20 20 O 1.21553 * 120.00349 * 0.02562 * 19 18 15
21 21 C 1.47852 * 119.99806 * 180.27557 * 19 18 15
22 22 C 1.39590 * 120.14154 * 359.45064 * 21 19 18
23 23 C 1.37939 * 119.85512 * 179.78866 * 22 21 19
24 24 C 1.38388 * 120.14156 * 0.48858 * 23 22 21
25 25 C 1.38338 * 120.28805 * 359.74114 * 24 23 22
26 26 C 1.50700 * 119.92464 * 180.02562 * 25 24 23
27 27 C 1.37975 * 120.14832 * 0.02562 * 25 24 23
28 28 H 4.40643 * 5.51335 * 179.97438 * 4 1 2
29 29 H 1.08996 * 109.47379 * 79.69113 * 3 2 1
30 30 H 1.08997 * 109.47358 * 319.68903 * 3 2 1
31 31 H 0.96996 * 120.00720 * 180.02562 * 8 7 5
32 32 H 1.09003 * 109.46979 * 182.65217 * 17 15 13
33 33 H 1.09001 * 109.46929 * 302.64975 * 17 15 13
34 34 H 1.08998 * 109.47270 * 62.65277 * 17 15 13
35 35 H 0.96999 * 119.99704 * 25.00395 * 18 15 13
36 36 H 1.08001 * 120.07896 * 0.02562 * 22 21 19
37 37 H 1.08000 * 119.93421 * 180.23107 * 23 22 21
38 38 H 1.07994 * 119.85524 * 179.76810 * 24 23 22
39 39 H 1.09004 * 109.47548 * 270.02172 * 26 25 24
40 40 H 1.08995 * 109.47424 * 30.02500 * 26 25 24
41 41 H 1.08999 * 109.47233 * 150.02296 * 26 25 24
42 42 H 1.08003 * 120.07219 * 179.97438 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1337 1.3014 0.4654
5 6 3.2988 1.5317 1.8068
6 1 3.8438 2.4015 2.1422
7 6 2.7647 0.6459 2.7346
8 7 1.7199 -0.0859 2.4187
9 14 3.5319 0.4953 4.4311
10 1 2.8861 1.4631 5.3541
11 1 3.3340 -0.8845 4.9432
12 1 4.9853 0.7877 4.3449
13 6 3.4201 2.2716 -0.4252
14 8 3.8954 3.3213 -0.0465
15 6 3.1499 2.0522 -1.8915
16 1 2.2997 1.3801 -2.0077
17 6 4.3838 1.4324 -2.5503
18 7 2.8484 3.3359 -2.5299
19 6 2.1063 3.3714 -3.6543
20 8 1.6868 2.3384 -4.1386
21 6 1.8071 4.6664 -4.3020
22 6 2.2821 5.8550 -3.7450
23 6 2.0031 7.0595 -4.3566
24 6 1.2456 7.0920 -5.5143
25 6 0.7679 5.9181 -6.0687
26 6 -0.0557 5.9630 -7.3299
27 6 1.0438 4.7062 -5.4696
28 1 -1.0502 -0.0004 -0.0003
29 1 3.0094 -0.1831 -1.0110
30 1 3.0097 -0.7828 0.6648
31 1 1.3468 -0.7040 3.0664
32 1 4.2056 1.3172 -3.6194
33 1 5.2446 2.0824 -2.3933
34 1 4.5803 0.4560 -2.1074
35 1 3.1830 4.1602 -2.1432
36 1 2.8700 5.8313 -2.8394
37 1 2.3731 7.9795 -3.9288
38 1 1.0269 8.0380 -5.9872
39 1 -1.1106 6.0572 -7.0720
40 1 0.2487 6.8188 -7.9325
41 1 0.0989 5.0455 -7.8977
42 1 0.6699 3.7905 -5.9033
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000281290505.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:58:00
Heat of formation + Delta-G solvation = 23.064583 kcal
Electronic energy + Delta-G solvation = -25582.761904 eV
Core-core repulsion = 21916.039386 eV
Total energy + Delta-G solvation = -3666.722519 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.142 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-40.26593 -39.11140 -38.08677 -35.48563 -34.43566 -33.12520 -32.07259 -31.39902
-31.24511 -29.93726 -27.02720 -26.47646 -25.32627 -24.34268 -22.63245 -21.90783
-19.99031 -19.31647 -17.98893 -17.69115 -16.60492 -16.44422 -15.90970 -15.67857
-15.01878 -14.80386 -14.73053 -14.45651 -14.13000 -13.93236 -13.80913 -13.59082
-13.15670 -13.10361 -12.64700 -12.42995 -12.34130 -12.09646 -11.84191 -11.72437
-11.71096 -11.66879 -11.21768 -11.11848 -10.99357 -10.59100 -10.36124 -9.75606
-9.29296 -9.27049 -9.10817 -8.95353 -8.87373 -8.79958 -8.42551 -8.00354
-6.36970 -3.90624 0.81249 1.23789 2.94057 3.06562 3.20991 3.25349
3.28598 3.70833 3.84994 3.87409 4.11136 4.20529 4.62352 4.68340
4.76147 4.78476 4.97874 5.03004 5.12996 5.22189 5.39905 5.43584
5.48401 5.55624 5.58399 5.60508 5.69459 5.81784 5.91637 5.99596
6.13692 6.20124 6.24878 6.28750 6.38476 6.47275 6.62866 6.69441
6.79236 7.06738 7.49376 7.77931 7.91483 8.30751 8.43366 8.94707
9.01213 9.25324 9.75365 10.56543
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.021698 B = 0.003201 C = 0.003062
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1290.114826 B = 8743.909977 C = 9141.680357
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.254 4.254
2 C -0.110 4.110
3 C 0.230 3.770
4 N -0.427 5.427
5 C -0.324 4.324
6 H 0.108 0.892
7 C 0.036 3.964
8 N -0.846 5.846
9 Si 0.918 3.082
10 H -0.278 1.278
11 H -0.282 1.282
12 H -0.268 1.268
13 C 0.441 3.559
14 O -0.585 6.585
15 C 0.128 3.872
16 H 0.102 0.898
17 C -0.154 4.154
18 N -0.699 5.699
19 C 0.556 3.444
20 O -0.542 6.542
21 C -0.123 4.123
22 C -0.090 4.090
23 C -0.124 4.124
24 C -0.100 4.100
25 C -0.099 4.099
26 C -0.113 4.113
27 C -0.062 4.062
28 H 0.197 0.803
29 H 0.068 0.932
30 H 0.101 0.899
31 H 0.270 0.730
32 H 0.063 0.937
33 H 0.062 0.938
34 H 0.070 0.930
35 H 0.407 0.593
36 H 0.130 0.870
37 H 0.128 0.872
38 H 0.124 0.876
39 H 0.071 0.929
40 H 0.066 0.934
41 H 0.068 0.932
42 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.734 7.532 -14.486 16.343
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.273 4.273
2 C -0.112 4.112
3 C 0.106 3.894
4 N -0.144 5.144
5 C -0.450 4.450
6 H 0.126 0.874
7 C -0.170 4.170
8 N -0.482 5.482
9 Si 0.744 3.256
10 H -0.204 1.204
11 H -0.208 1.208
12 H -0.193 1.193
13 C 0.229 3.771
14 O -0.470 6.470
15 C 0.020 3.980
16 H 0.119 0.881
17 C -0.213 4.213
18 N -0.351 5.351
19 C 0.343 3.657
20 O -0.420 6.420
21 C -0.126 4.126
22 C -0.109 4.109
23 C -0.142 4.142
24 C -0.118 4.118
25 C -0.099 4.099
26 C -0.170 4.170
27 C -0.081 4.081
28 H 0.214 0.786
29 H 0.086 0.914
30 H 0.119 0.881
31 H 0.081 0.919
32 H 0.082 0.918
33 H 0.081 0.919
34 H 0.089 0.911
35 H 0.245 0.755
36 H 0.148 0.852
37 H 0.146 0.854
38 H 0.142 0.858
39 H 0.090 0.910
40 H 0.085 0.915
41 H 0.087 0.913
42 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges -0.877 7.120 -14.474 16.154
hybrid contribution 0.032 0.166 1.343 1.353
sum -0.846 7.286 -13.131 15.041
Atomic orbital electron populations
1.24158 0.95267 1.01250 1.06619 1.22760 0.94036 0.99196 0.95225
1.18338 0.85013 0.88021 0.97983 1.43701 1.54760 1.09681 1.06298
1.19634 1.34373 1.11642 0.79395 0.87440 1.25297 0.94580 0.97122
1.00024 1.70159 1.16966 1.24920 1.36186 0.86082 0.80112 0.77571
0.81858 1.20373 1.20757 1.19286 1.19804 0.85914 0.84748 0.86637
1.90497 1.49593 1.26847 1.80077 1.20830 0.99616 0.85785 0.91817
0.88054 1.22084 0.97207 1.01117 1.00915 1.45694 1.52968 1.10328
1.26150 1.18240 0.78100 0.88738 0.80593 1.90748 1.52791 1.34473
1.64018 1.19984 1.02059 0.93067 0.97533 1.21435 0.98249 0.91917
0.99279 1.21097 0.99187 0.97858 0.96012 1.21220 0.97009 0.97766
0.95817 1.19890 0.99425 0.92869 0.97742 1.20786 0.99164 1.02898
0.94110 1.21157 0.95232 0.98117 0.93563 0.78603 0.91386 0.88067
0.91923 0.91774 0.91851 0.91114 0.75519 0.85218 0.85358 0.85778
0.91044 0.91497 0.91302 0.84659
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.25 -5.57 19.08 29.55 0.56 -5.01 16
2 C -0.11 -2.56 10.45 -37.13 -0.39 -2.94 16
3 C 0.23 5.07 4.82 -6.83 -0.03 5.03 16
4 N -0.43 -10.56 2.59 -117.93 -0.31 -10.86 16
5 C -0.32 -8.68 9.37 -14.93 -0.14 -8.82 16
6 H 0.11 3.03 7.34 -52.49 -0.39 2.65 16
7 C 0.04 0.91 4.83 -17.47 -0.08 0.82 16
8 N -0.85 -21.75 9.00 55.50 0.50 -21.25 16
9 Si 0.92 19.94 29.62 -169.99 -5.04 14.90 16
10 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16
11 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16
12 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16
13 C 0.44 10.37 6.80 -10.98 -0.07 10.30 16
14 O -0.59 -15.13 15.71 5.55 0.09 -15.05 16
15 C 0.13 2.50 2.12 -69.08 -0.15 2.35 16
16 H 0.10 2.11 5.80 -51.93 -0.30 1.81 16
17 C -0.15 -2.54 9.30 37.15 0.35 -2.20 16
18 N -0.70 -12.52 5.01 -55.88 -0.28 -12.80 16
19 C 0.56 9.74 7.74 -12.33 -0.10 9.64 16
20 O -0.54 -10.83 16.01 5.32 0.09 -10.75 16
21 C -0.12 -1.79 5.87 -104.97 -0.62 -2.40 16
22 C -0.09 -1.12 9.54 -39.19 -0.37 -1.49 16
23 C -0.12 -1.27 10.03 -39.64 -0.40 -1.67 16
24 C -0.10 -0.96 9.69 -39.49 -0.38 -1.34 16
25 C -0.10 -1.04 5.87 -104.68 -0.61 -1.65 16
26 C -0.11 -0.86 10.01 36.01 0.36 -0.49 16
27 C -0.06 -0.80 9.24 -39.19 -0.36 -1.16 16
28 H 0.20 3.60 7.80 -54.08 -0.42 3.18 16
29 H 0.07 1.28 5.31 -51.93 -0.28 1.00 16
30 H 0.10 2.29 6.87 -51.93 -0.36 1.93 16
31 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16
32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16
34 H 0.07 1.08 7.02 -51.93 -0.36 0.71 16
35 H 0.41 6.95 5.88 -40.82 -0.24 6.71 16
36 H 0.13 1.53 6.41 -52.49 -0.34 1.19 16
37 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16
38 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16
39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16
40 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16
41 H 0.07 0.49 8.08 -51.93 -0.42 0.08 16
42 H 0.14 1.76 7.65 -52.48 -0.40 1.36 16
LS Contribution 359.13 15.07 5.41 5.41
Total: -1.00 -31.86 359.13 -7.15 -39.01
By element:
Atomic # 1 Polarization: 17.60 SS G_CDS: -5.17 Total: 12.43 kcal
Atomic # 6 Polarization: 1.40 SS G_CDS: -2.44 Total: -1.04 kcal
Atomic # 7 Polarization: -44.83 SS G_CDS: -0.09 Total: -44.91 kcal
Atomic # 8 Polarization: -25.97 SS G_CDS: 0.17 Total: -25.80 kcal
Atomic # 14 Polarization: 19.94 SS G_CDS: -5.04 Total: 14.90 kcal
Total LS contribution 5.41 Total: 5.41 kcal
Total: -31.86 -7.15 -39.01 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000281290505.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.075 kcal
(2) G-P(sol) polarization free energy of solvation -31.861 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.213 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.010 kcal
(6) G-S(sol) free energy of system = (1) + (5) 23.065 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds