Wall clock time and date at job start Tue Mar 31 2020 10:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 115.54986 * 2 1 4 4 C 1.52998 * 117.50213 * 214.29312 * 2 1 3 5 5 C 1.52997 * 117.50056 * 145.66823 * 2 1 3 6 6 C 1.47202 * 117.50340 * 215.00255 * 5 2 1 7 7 N 3.58155 * 145.26567 * 105.11057 * 2 1 3 8 8 N 1.46501 * 117.49937 * 0.02562 * 5 2 1 9 9 C 1.34773 * 120.00282 * 179.97438 * 8 5 2 10 10 O 1.21287 * 120.00072 * 359.71845 * 9 8 5 11 11 C 1.50705 * 120.00196 * 179.97438 * 9 8 5 12 12 C 1.50693 * 109.47150 * 180.02562 * 11 9 8 13 13 C 1.38321 * 119.96904 * 89.99913 * 12 11 9 14 14 C 1.38284 * 120.14264 * 179.97438 * 13 12 11 15 15 C 1.38126 * 120.06581 * 0.02562 * 14 13 12 16 16 C 1.38854 * 119.93104 * 359.97438 * 15 14 13 17 17 O 1.35753 * 120.07338 * 179.97438 * 16 15 14 18 18 C 1.34835 * 116.99469 * 354.46626 * 17 16 15 19 19 H 1.08002 * 120.00142 * 5.05454 * 18 17 16 20 20 C 1.38656 * 119.99833 * 185.05641 * 18 17 16 21 21 N 1.31553 * 119.99907 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99794 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47308 * 59.99521 * 22 20 18 24 24 H 1.48503 * 109.47050 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47142 * 299.99517 * 22 20 18 26 26 C 1.38077 * 119.96475 * 269.72524 * 12 11 9 27 27 H 1.09003 * 109.47423 * 274.32977 * 1 2 3 28 28 H 1.09002 * 109.46996 * 34.32709 * 1 2 3 29 29 H 1.09000 * 109.46941 * 154.32991 * 1 2 3 30 30 H 1.08999 * 109.47145 * 205.67074 * 3 2 1 31 31 H 1.08993 * 109.47282 * 325.67163 * 3 2 1 32 32 H 1.09007 * 109.47185 * 85.67389 * 3 2 1 33 33 H 1.08994 * 117.50385 * 145.01545 * 4 2 1 34 34 H 1.09004 * 117.49618 * 359.97438 * 4 2 1 35 35 H 0.97002 * 119.99677 * 359.97438 * 8 5 2 36 36 H 1.09001 * 109.46972 * 299.99900 * 11 9 8 37 37 H 1.09002 * 109.47040 * 59.99639 * 11 9 8 38 38 H 1.08000 * 119.93278 * 0.02562 * 13 12 11 39 39 H 1.08001 * 119.96821 * 180.02562 * 14 13 12 40 40 H 1.07991 * 120.03454 * 180.02562 * 15 14 13 41 41 H 0.96998 * 119.99874 * 180.02562 * 21 20 18 42 42 H 1.08000 * 120.03218 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 2.2365 -1.1212 -0.7646 5 6 2.2364 -1.1207 0.7654 6 6 3.4990 -0.7884 1.4454 7 7 4.4733 -0.5320 1.9701 8 7 1.3961 -2.1120 1.4417 9 6 1.9656 -3.1210 2.1302 10 8 3.1739 -3.2113 2.1856 11 6 1.1012 -4.1404 2.8264 12 6 1.9769 -5.1532 3.5180 13 6 2.3784 -4.9417 4.8247 14 6 3.1815 -5.8690 5.4630 15 6 3.5857 -7.0095 4.7968 16 6 3.1844 -7.2247 3.4851 17 8 3.5803 -8.3443 2.8275 18 6 4.4546 -9.1504 3.4630 19 1 4.7447 -8.9365 4.4811 20 6 4.9811 -10.2542 2.8095 21 7 4.6274 -10.5151 1.5696 22 14 6.1917 -11.3714 3.6902 23 1 5.5474 -11.9440 4.8995 24 1 6.6031 -12.4705 2.7803 25 1 7.3876 -10.5874 4.0907 26 6 2.3730 -6.2940 2.8486 27 1 -0.3634 0.0776 1.0247 28 1 -0.3633 0.8487 -0.5795 29 1 -0.3633 -0.9262 -0.4452 30 1 3.1822 1.3087 -0.4452 31 1 1.5809 2.0742 -0.5795 32 1 2.2766 1.7417 1.0248 33 1 3.1715 -0.8755 -1.2680 34 1 1.6112 -1.8591 -1.2673 35 1 0.4298 -2.0421 1.3940 36 1 0.4723 -3.6409 3.5633 37 1 0.4715 -4.6444 2.0931 38 1 2.0634 -4.0510 5.3478 39 1 3.4931 -5.7013 6.4834 40 1 4.2126 -7.7335 5.2960 41 1 4.9954 -11.2874 1.1125 42 1 2.0551 -6.4609 1.8300 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291442130.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:15 Heat of formation + Delta-G solvation = -9.606263 kcal Electronic energy + Delta-G solvation = -24896.893005 eV Core-core repulsion = 21228.753772 eV Total energy + Delta-G solvation = -3668.139233 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.55953 -40.73889 -39.54976 -38.12276 -37.01381 -34.62728 -34.34514 -33.37752 -30.93474 -30.26107 -28.62345 -28.26856 -27.25704 -24.90918 -23.33948 -22.98185 -21.86925 -20.62151 -19.54315 -19.00425 -18.60803 -18.06990 -16.86714 -16.63914 -16.43975 -16.12015 -15.81879 -15.55038 -15.29922 -15.06235 -15.03508 -14.79928 -14.54032 -14.32918 -14.03090 -13.91754 -13.82872 -13.61792 -13.47238 -13.08095 -12.98255 -12.82761 -12.71703 -12.51229 -12.39828 -12.23534 -12.14290 -12.13005 -11.90294 -11.24903 -11.22365 -10.84578 -10.76573 -9.98797 -9.65267 -8.99390 -8.48594 -6.16970 0.48902 0.73886 1.31776 1.34435 1.43043 1.48094 1.48551 1.62601 2.11975 2.16661 2.64160 2.80921 2.84065 3.14993 3.43716 3.51093 3.68980 3.78394 3.99195 4.05015 4.09060 4.26652 4.30481 4.45285 4.56282 4.65338 4.72614 4.76801 4.78973 4.83526 5.01808 5.05333 5.08228 5.09142 5.11010 5.26668 5.29372 5.32013 5.48352 5.63138 5.71066 5.73316 6.01228 6.21162 6.38986 6.56773 6.95957 7.22151 7.77048 8.74736 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.020836 B = 0.002712 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.527424 B =10322.354438 C =10615.997207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.058 4.058 3 C -0.129 4.129 4 C -0.146 4.146 5 C 0.150 3.850 6 C 0.261 3.739 7 N -0.471 5.471 8 N -0.672 5.672 9 C 0.511 3.489 10 O -0.569 6.569 11 C -0.085 4.085 12 C -0.027 4.027 13 C -0.183 4.183 14 C -0.077 4.077 15 C -0.249 4.249 16 C 0.111 3.889 17 O -0.232 6.232 18 C -0.416 4.416 19 H 0.098 0.902 20 C -0.023 4.023 21 N -0.920 5.920 22 Si 1.018 2.982 23 H -0.254 1.254 24 H -0.268 1.268 25 H -0.263 1.263 26 C -0.188 4.188 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.102 0.898 32 H 0.056 0.944 33 H 0.104 0.896 34 H 0.139 0.861 35 H 0.434 0.566 36 H 0.149 0.851 37 H 0.136 0.864 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.116 0.884 41 H 0.273 0.727 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.975 23.044 -3.125 28.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.060 4.060 3 C -0.186 4.186 4 C -0.186 4.186 5 C 0.059 3.941 6 C -0.057 4.057 7 N -0.148 5.148 8 N -0.329 5.329 9 C 0.299 3.701 10 O -0.446 6.446 11 C -0.124 4.124 12 C -0.027 4.027 13 C -0.201 4.201 14 C -0.095 4.095 15 C -0.268 4.268 16 C 0.061 3.939 17 O -0.139 6.139 18 C -0.492 4.492 19 H 0.115 0.885 20 C -0.220 4.220 21 N -0.559 5.559 22 Si 0.837 3.163 23 H -0.178 1.178 24 H -0.192 1.192 25 H -0.187 1.187 26 C -0.207 4.207 27 H 0.098 0.902 28 H 0.111 0.889 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.120 0.880 32 H 0.075 0.925 33 H 0.123 0.877 34 H 0.157 0.843 35 H 0.276 0.724 36 H 0.167 0.833 37 H 0.153 0.847 38 H 0.162 0.838 39 H 0.159 0.841 40 H 0.133 0.867 41 H 0.082 0.918 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.695 23.104 -2.637 26.987 hybrid contribution 0.646 -1.181 0.184 1.358 sum -13.048 21.923 -2.453 25.630 Atomic orbital electron populations 1.21600 0.87501 1.05081 1.04203 1.22331 0.97679 0.90120 0.95868 1.21570 1.00594 0.93799 1.02681 1.24154 1.03970 1.01474 0.89008 1.17398 0.86602 0.98658 0.91461 1.27936 0.93611 0.91368 0.92748 1.81162 1.12804 1.12001 1.08860 1.45075 1.10452 1.24558 1.52825 1.21261 0.88790 0.81925 0.78136 1.90826 1.17481 1.74677 1.61609 1.20704 0.96599 0.93337 1.01786 1.19211 0.96812 0.92857 0.93868 1.20972 1.03040 1.00804 0.95305 1.21113 0.95960 0.92510 0.99945 1.21290 1.08222 1.01901 0.95395 1.19902 0.94315 0.87487 0.92199 1.83930 1.56676 1.29553 1.43766 1.21762 1.22067 1.06454 0.98936 0.88500 1.26580 0.99911 0.98771 0.96731 1.70171 1.44343 1.28803 1.12549 0.84669 0.77021 0.76776 0.77858 1.17836 1.19243 1.18714 1.20253 1.04596 0.95637 1.00252 0.90172 0.88941 0.89781 0.93135 0.87953 0.92498 0.87747 0.84300 0.72379 0.83327 0.84661 0.83834 0.84135 0.86653 0.91793 0.86941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.16 8.63 71.98 0.62 0.46 16 2 C -0.06 -0.49 2.70 -52.18 -0.14 -0.63 16 3 C -0.13 -1.18 8.86 71.98 0.64 -0.54 16 4 C -0.15 -1.76 9.43 30.59 0.29 -1.47 16 5 C 0.15 2.66 2.84 1.80 0.01 2.67 16 6 C 0.26 7.54 11.85 89.44 1.06 8.60 16 7 N -0.47 -16.96 18.54 20.01 0.37 -16.59 16 8 N -0.67 -10.24 5.50 -431.20 -2.37 -12.61 16 9 C 0.51 13.01 7.66 87.66 0.67 13.68 16 10 O -0.57 -22.38 14.21 -3.05 -0.04 -22.42 16 11 C -0.09 -1.77 5.83 29.10 0.17 -1.60 16 12 C -0.03 -0.93 4.37 -19.89 -0.09 -1.01 16 13 C -0.18 -6.20 9.70 22.30 0.22 -5.98 16 14 C -0.08 -2.96 10.04 22.25 0.22 -2.73 16 15 C -0.25 -11.87 9.17 22.39 0.21 -11.66 16 16 C 0.11 5.93 6.65 22.58 0.15 6.08 16 17 O -0.23 -14.74 9.76 -22.82 -0.22 -14.97 16 18 C -0.42 -25.58 9.49 67.92 0.64 -24.94 16 19 H 0.10 5.53 5.20 -2.91 -0.02 5.52 16 20 C -0.02 -1.34 5.49 84.83 0.47 -0.87 16 21 N -0.92 -58.36 13.67 21.61 0.30 -58.07 16 22 Si 1.02 44.88 29.55 68.60 2.03 46.91 16 23 H -0.25 -10.42 7.11 99.48 0.71 -9.72 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 25 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 26 C -0.19 -8.43 9.64 22.39 0.22 -8.21 16 27 H 0.08 0.00 8.05 -2.39 -0.02 -0.02 16 28 H 0.09 -0.09 7.92 -2.39 -0.02 -0.11 16 29 H 0.08 -0.09 7.80 -2.39 -0.02 -0.11 16 30 H 0.05 0.60 7.90 -2.39 -0.02 0.58 16 31 H 0.10 0.39 7.92 -2.39 -0.02 0.37 16 32 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.10 1.40 8.05 -2.39 -0.02 1.38 16 34 H 0.14 1.12 8.05 -2.39 -0.02 1.10 16 35 H 0.43 2.29 7.40 -92.71 -0.69 1.61 16 36 H 0.15 1.75 8.08 -2.39 -0.02 1.73 16 37 H 0.14 2.05 8.08 -2.39 -0.02 2.03 16 38 H 0.14 3.74 8.06 -2.91 -0.02 3.71 16 39 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 40 H 0.12 5.58 5.64 -2.91 -0.02 5.57 16 41 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 42 H 0.11 4.92 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -94.06 365.60 5.77 -88.29 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.37 Total: 17.64 kcal Atomic # 6 Polarization: -33.53 SS G_CDS: 5.35 Total: -28.18 kcal Atomic # 7 Polarization: -85.56 SS G_CDS: -1.70 Total: -87.26 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -0.27 Total: -37.39 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -94.06 5.77 -88.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291442130.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.679 kcal (2) G-P(sol) polarization free energy of solvation -94.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds