Wall clock time and date at job start Tue Mar 31 2020 11:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33675 * 126.27869 * 2 1 4 4 C 1.30619 * 109.00164 * 180.30358 * 3 2 1 5 5 C 1.50702 * 125.42040 * 179.72546 * 4 3 2 6 6 C 1.53011 * 109.46845 * 119.98003 * 5 4 3 7 7 C 1.52995 * 109.47414 * 239.97747 * 5 4 3 8 8 O 1.33671 * 109.16245 * 359.73329 * 4 3 2 9 9 C 1.35347 * 107.68339 * 359.97438 * 8 4 3 10 10 C 1.46657 * 126.64991 * 180.02562 * 9 8 4 11 11 O 1.21701 * 120.00107 * 180.02562 * 10 9 8 12 12 N 1.34774 * 120.00070 * 0.29263 * 10 9 8 13 13 C 1.39094 * 120.00592 * 175.44106 * 12 10 9 14 14 C 1.39517 * 119.84339 * 215.04218 * 13 12 10 15 15 C 1.36350 * 120.16446 * 179.75832 * 14 13 12 16 16 C 1.40879 * 119.83313 * 0.53880 * 15 14 13 17 17 C 1.41132 * 120.15956 * 179.69830 * 16 15 14 18 18 H 1.08001 * 119.99915 * 214.80445 * 17 16 15 19 19 C 1.39906 * 120.00160 * 34.80175 * 17 16 15 20 20 N 1.30875 * 120.00068 * 355.55817 * 19 17 16 21 21 Si 1.86798 * 119.99871 * 175.56138 * 19 17 16 22 22 H 1.48497 * 109.47300 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47371 * 120.00150 * 21 19 17 24 24 H 1.48504 * 109.47108 * 239.99622 * 21 19 17 25 25 C 1.40878 * 119.68249 * 359.71337 * 16 15 14 26 26 C 1.36359 * 119.82592 * 0.02562 * 25 16 15 27 27 H 1.09007 * 109.46889 * 270.15230 * 1 2 3 28 28 H 1.09000 * 109.47066 * 30.14772 * 1 2 3 29 29 H 1.09004 * 109.47583 * 150.14933 * 1 2 3 30 30 H 1.08993 * 109.47310 * 359.97438 * 5 4 3 31 31 H 1.09003 * 109.46660 * 60.00195 * 6 5 4 32 32 H 1.09001 * 109.46596 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.46878 * 300.00211 * 6 5 4 34 34 H 1.09001 * 109.47077 * 60.00148 * 7 5 4 35 35 H 1.08997 * 109.47216 * 180.02562 * 7 5 4 36 36 H 1.09004 * 109.47366 * 299.99958 * 7 5 4 37 37 H 0.97000 * 119.99719 * 355.44708 * 12 10 9 38 38 H 1.08005 * 119.91511 * 0.02562 * 14 13 12 39 39 H 1.08004 * 120.08363 * 180.23183 * 15 14 13 40 40 H 0.97003 * 119.99566 * 180.02562 * 20 19 17 41 41 H 1.07996 * 120.09321 * 179.97438 * 25 16 15 42 42 H 1.08002 * 119.91333 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0776 0.0000 4 6 3.5452 0.6897 -0.0065 5 6 4.7439 1.6030 -0.0147 6 6 5.5936 1.3404 1.2305 7 6 5.5799 1.3362 -1.2680 8 8 3.5892 -0.6463 -0.0050 9 6 2.3140 -1.0996 0.0033 10 6 1.8832 -2.5015 0.0083 11 8 0.6970 -2.7736 0.0154 12 7 2.8010 -3.4885 0.0106 13 6 2.3955 -4.8152 0.1111 14 6 3.1802 -5.7297 0.8142 15 6 2.7864 -7.0307 0.9210 16 6 1.5897 -7.4532 0.3095 17 6 1.1788 -8.7996 0.4103 18 1 0.6659 -9.2709 -0.4151 19 6 1.4360 -9.5239 1.5793 20 7 2.1332 -8.9815 2.5451 21 14 0.7844 -11.2650 1.7617 22 1 0.0321 -11.6427 0.5384 23 1 1.9210 -12.2014 1.9534 24 1 -0.1183 -11.3349 2.9388 25 6 0.8052 -6.5253 -0.4034 26 6 1.2090 -5.2263 -0.4972 27 1 -0.3633 0.0027 1.0277 28 1 -0.3633 0.8887 -0.5161 29 1 -0.3634 -0.8913 -0.5115 30 1 4.4102 2.6406 -0.0147 31 1 5.9273 0.3028 1.2303 32 1 6.4603 2.0013 1.2248 33 1 4.9979 1.5305 2.1234 34 1 4.9747 1.5232 -2.1550 35 1 6.4471 1.9965 -1.2736 36 1 5.9138 0.2986 -1.2680 37 1 3.7444 -3.2736 -0.0578 38 1 4.0996 -5.4052 1.2788 39 1 3.3930 -7.7367 1.4689 40 1 2.3118 -9.4839 3.3555 41 1 -0.1132 -6.8421 -0.8751 42 1 0.6088 -4.5138 -1.0437 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291975789.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:26 Heat of formation + Delta-G solvation = -5.101466 kcal Electronic energy + Delta-G solvation = -25066.479311 eV Core-core repulsion = 21398.535421 eV Total energy + Delta-G solvation = -3667.943890 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.51806 -39.65804 -37.34099 -35.98897 -35.48429 -34.46182 -32.98731 -31.19924 -29.67635 -29.15205 -27.65673 -27.62553 -25.27443 -24.13931 -22.14039 -21.60429 -21.06012 -20.40701 -19.86280 -18.01583 -17.34345 -16.98222 -16.47404 -16.07203 -15.37327 -15.17173 -14.56793 -14.53322 -14.24646 -13.94202 -13.56645 -13.27316 -13.15940 -13.02656 -12.73701 -12.61097 -12.40988 -12.17652 -11.88672 -11.77874 -11.72320 -11.47544 -11.43997 -11.22436 -11.06894 -11.01311 -10.88032 -10.78904 -10.14077 -9.61727 -9.54157 -9.30113 -9.00396 -8.82166 -7.61304 -6.93981 -6.67364 -4.39730 0.80801 2.30034 2.32735 2.63064 3.04054 3.05826 3.08876 3.13364 3.37943 3.51074 3.74720 3.94469 4.42205 4.58262 4.60397 4.64968 4.81728 4.94094 5.19599 5.25550 5.37602 5.41488 5.50208 5.53737 5.60162 5.67704 5.78060 5.79904 5.85620 5.92219 6.13774 6.28494 6.37617 6.64191 6.82806 7.00024 7.11867 7.22251 7.47760 7.57667 7.66492 7.76515 8.00327 8.14436 8.24843 8.48222 8.60691 8.87100 8.92853 10.23478 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.025190 B = 0.002677 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.275243 B =10456.789096 C =11110.219312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.071 3.929 3 N -0.488 5.488 4 C 0.216 3.784 5 C 0.001 3.999 6 C -0.152 4.152 7 C -0.151 4.151 8 O -0.186 6.186 9 C -0.105 4.105 10 C 0.590 3.410 11 O -0.504 6.504 12 N -0.633 5.633 13 C -0.005 4.005 14 C -0.115 4.115 15 C -0.142 4.142 16 C 0.102 3.898 17 C -0.458 4.458 18 H 0.078 0.922 19 C 0.069 3.931 20 N -0.809 5.809 21 Si 0.916 3.084 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.205 4.205 26 C -0.082 4.082 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.400 0.600 38 H 0.092 0.908 39 H 0.133 0.867 40 H 0.278 0.722 41 H 0.098 0.902 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.063 17.178 -3.266 18.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.052 4.052 3 N -0.217 5.217 4 C 0.011 3.989 5 C -0.018 4.018 6 C -0.209 4.209 7 C -0.209 4.209 8 O -0.072 6.072 9 C -0.161 4.161 10 C 0.375 3.625 11 O -0.382 6.382 12 N -0.274 5.274 13 C -0.097 4.097 14 C -0.135 4.135 15 C -0.161 4.161 16 C 0.100 3.900 17 C -0.488 4.488 18 H 0.096 0.904 19 C -0.147 4.147 20 N -0.436 5.436 21 Si 0.741 3.259 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.199 1.199 25 C -0.225 4.225 26 C -0.102 4.102 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.115 0.885 30 H 0.132 0.868 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.234 0.766 38 H 0.110 0.890 39 H 0.151 0.849 40 H 0.089 0.911 41 H 0.116 0.884 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.175 17.498 -3.011 18.798 hybrid contribution 0.441 -1.240 0.333 1.358 sum 6.617 16.257 -2.678 17.755 Atomic orbital electron populations 1.20374 0.85274 1.04246 1.03704 1.22032 0.98329 0.86340 0.98546 1.70308 1.00345 1.31262 1.19796 1.26448 0.95331 0.79512 0.97652 1.19820 0.87930 0.96172 0.97884 1.21919 0.99709 1.03223 0.96092 1.21911 0.99803 1.03208 0.95979 1.84415 1.29918 1.23507 1.69404 1.23216 0.80995 0.96602 1.15249 1.16340 0.86190 0.80971 0.78949 1.90848 1.15656 1.81044 1.50630 1.42834 1.09147 1.05318 1.70116 1.17239 1.00997 0.81555 1.09896 1.20312 0.99075 0.94518 0.99627 1.21194 0.97312 0.94267 1.03377 1.17757 0.89679 0.93069 0.89533 1.19561 1.32873 0.95891 1.00512 0.90424 1.25909 0.93457 0.99879 0.95414 1.69770 1.30623 1.37473 1.05727 0.86127 0.79235 0.81282 0.79235 1.18532 1.19954 1.19938 1.20805 1.00490 0.92652 1.08595 1.20402 0.95407 0.95829 0.98535 0.90097 0.90737 0.88472 0.86776 0.91526 0.90669 0.91841 0.91853 0.90671 0.91547 0.76622 0.88990 0.84918 0.91098 0.88389 0.87355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 9.87 36.01 0.36 -0.70 16 2 C 0.07 1.10 7.16 -82.45 -0.59 0.51 16 3 N -0.49 -6.99 11.26 -7.06 -0.08 -7.07 16 4 C 0.22 2.69 6.82 -12.79 -0.09 2.60 16 5 C 0.00 0.01 3.39 -91.77 -0.31 -0.30 16 6 C -0.15 -1.03 9.18 37.16 0.34 -0.69 16 7 C -0.15 -0.99 9.17 37.15 0.34 -0.65 16 8 O -0.19 -2.61 10.58 4.40 0.05 -2.56 16 9 C -0.11 -1.71 7.18 -36.85 -0.26 -1.97 16 10 C 0.59 11.01 7.62 -12.86 -0.10 10.91 16 11 O -0.50 -10.63 12.21 5.19 0.06 -10.57 16 12 N -0.63 -11.70 5.29 -10.93 -0.06 -11.76 16 13 C 0.00 -0.11 6.30 -83.61 -0.53 -0.63 16 14 C -0.12 -2.61 9.90 -39.79 -0.39 -3.01 16 15 C -0.14 -3.59 8.61 -39.26 -0.34 -3.93 16 16 C 0.10 2.70 5.55 -106.80 -0.59 2.11 16 17 C -0.46 -12.03 9.02 -37.86 -0.34 -12.37 16 18 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 19 C 0.07 1.72 5.42 -17.34 -0.09 1.62 16 20 N -0.81 -20.77 10.60 55.55 0.59 -20.18 16 21 Si 0.92 18.76 29.56 -169.99 -5.03 13.73 16 22 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 23 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 25 C -0.21 -5.11 9.74 -39.26 -0.38 -5.50 16 26 C -0.08 -1.93 8.61 -39.78 -0.34 -2.27 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.10 1.41 6.48 -51.93 -0.34 1.07 16 30 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.40 6.18 8.61 -40.82 -0.35 5.82 16 38 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 39 H 0.13 3.47 6.13 -52.48 -0.32 3.15 16 40 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 41 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 42 H 0.11 2.49 6.22 -52.49 -0.33 2.16 16 LS Contribution 357.34 15.07 5.39 5.39 Total: -1.00 -29.87 357.34 -7.94 -37.81 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -5.53 Total: 9.49 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -3.33 Total: -14.27 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.45 Total: -39.01 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.11 Total: -13.13 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.87 -7.94 -37.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291975789.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.708 kcal (2) G-P(sol) polarization free energy of solvation -29.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds