Wall clock time and date at job start Tue Mar 31 2020 11:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33675 * 126.27869 * 2 1 4 4 C 1.30619 * 109.00164 * 180.30358 * 3 2 1 5 5 C 1.50702 * 125.42040 * 179.72546 * 4 3 2 6 6 C 1.53011 * 109.46845 * 119.98003 * 5 4 3 7 7 C 1.52995 * 109.47414 * 239.97747 * 5 4 3 8 8 O 1.33671 * 109.16245 * 359.73329 * 4 3 2 9 9 C 1.35347 * 107.68339 * 359.97438 * 8 4 3 10 10 C 1.46657 * 126.64991 * 180.02562 * 9 8 4 11 11 O 1.21701 * 120.00107 * 180.02562 * 10 9 8 12 12 N 1.34774 * 120.00070 * 0.29263 * 10 9 8 13 13 C 1.39094 * 120.00592 * 175.44106 * 12 10 9 14 14 C 1.39517 * 119.84339 * 215.04218 * 13 12 10 15 15 C 1.36350 * 120.16446 * 179.75832 * 14 13 12 16 16 C 1.40879 * 119.83313 * 0.53880 * 15 14 13 17 17 C 1.41132 * 120.15956 * 179.69830 * 16 15 14 18 18 H 1.08001 * 119.99915 * 214.80445 * 17 16 15 19 19 C 1.39906 * 120.00160 * 34.80175 * 17 16 15 20 20 N 1.30875 * 120.00068 * 355.55817 * 19 17 16 21 21 Si 1.86798 * 119.99871 * 175.56138 * 19 17 16 22 22 H 1.48497 * 109.47300 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47371 * 120.00150 * 21 19 17 24 24 H 1.48504 * 109.47108 * 239.99622 * 21 19 17 25 25 C 1.40878 * 119.68249 * 359.71337 * 16 15 14 26 26 C 1.36359 * 119.82592 * 0.02562 * 25 16 15 27 27 H 1.09007 * 109.46889 * 270.15230 * 1 2 3 28 28 H 1.09000 * 109.47066 * 30.14772 * 1 2 3 29 29 H 1.09004 * 109.47583 * 150.14933 * 1 2 3 30 30 H 1.08993 * 109.47310 * 359.97438 * 5 4 3 31 31 H 1.09003 * 109.46660 * 60.00195 * 6 5 4 32 32 H 1.09001 * 109.46596 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.46878 * 300.00211 * 6 5 4 34 34 H 1.09001 * 109.47077 * 60.00148 * 7 5 4 35 35 H 1.08997 * 109.47216 * 180.02562 * 7 5 4 36 36 H 1.09004 * 109.47366 * 299.99958 * 7 5 4 37 37 H 0.97000 * 119.99719 * 355.44708 * 12 10 9 38 38 H 1.08005 * 119.91511 * 0.02562 * 14 13 12 39 39 H 1.08004 * 120.08363 * 180.23183 * 15 14 13 40 40 H 0.97003 * 119.99566 * 180.02562 * 20 19 17 41 41 H 1.07996 * 120.09321 * 179.97438 * 25 16 15 42 42 H 1.08002 * 119.91333 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0776 0.0000 4 6 3.5452 0.6897 -0.0065 5 6 4.7439 1.6030 -0.0147 6 6 5.5936 1.3404 1.2305 7 6 5.5799 1.3362 -1.2680 8 8 3.5892 -0.6463 -0.0050 9 6 2.3140 -1.0996 0.0033 10 6 1.8832 -2.5015 0.0083 11 8 0.6970 -2.7736 0.0154 12 7 2.8010 -3.4885 0.0106 13 6 2.3955 -4.8152 0.1111 14 6 3.1802 -5.7297 0.8142 15 6 2.7864 -7.0307 0.9210 16 6 1.5897 -7.4532 0.3095 17 6 1.1788 -8.7996 0.4103 18 1 0.6659 -9.2709 -0.4151 19 6 1.4360 -9.5239 1.5793 20 7 2.1332 -8.9815 2.5451 21 14 0.7844 -11.2650 1.7617 22 1 0.0321 -11.6427 0.5384 23 1 1.9210 -12.2014 1.9534 24 1 -0.1183 -11.3349 2.9388 25 6 0.8052 -6.5253 -0.4034 26 6 1.2090 -5.2263 -0.4972 27 1 -0.3633 0.0027 1.0277 28 1 -0.3633 0.8887 -0.5161 29 1 -0.3634 -0.8913 -0.5115 30 1 4.4102 2.6406 -0.0147 31 1 5.9273 0.3028 1.2303 32 1 6.4603 2.0013 1.2248 33 1 4.9979 1.5305 2.1234 34 1 4.9747 1.5232 -2.1550 35 1 6.4471 1.9965 -1.2736 36 1 5.9138 0.2986 -1.2680 37 1 3.7444 -3.2736 -0.0578 38 1 4.0996 -5.4052 1.2788 39 1 3.3930 -7.7367 1.4689 40 1 2.3118 -9.4839 3.3555 41 1 -0.1132 -6.8421 -0.8751 42 1 0.6088 -4.5138 -1.0437 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291975789.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:23 Heat of formation + Delta-G solvation = -23.625833 kcal Electronic energy + Delta-G solvation = -25067.282588 eV Core-core repulsion = 21398.535421 eV Total energy + Delta-G solvation = -3668.747167 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.63596 -41.25689 -39.12550 -36.74710 -36.67198 -36.07132 -34.76918 -32.32716 -31.54724 -30.91771 -28.96818 -28.13581 -26.89410 -25.31216 -23.66934 -23.05481 -22.51792 -21.80409 -21.08878 -19.50689 -19.18789 -18.13395 -18.11296 -17.07141 -16.99218 -16.23524 -16.14211 -15.89260 -15.66654 -15.11226 -14.89099 -14.55121 -14.35145 -14.23357 -14.12222 -14.04103 -13.63039 -13.39048 -13.27320 -13.08674 -12.93053 -12.79138 -12.60078 -12.52098 -12.36185 -12.12657 -12.03916 -11.98392 -11.79514 -11.43091 -11.31637 -11.04411 -10.76725 -10.01592 -9.51476 -8.80069 -8.53285 -6.36028 -0.40289 0.77560 1.10224 1.19924 1.25873 1.40181 1.47551 1.55325 1.93579 2.12736 2.23807 2.69465 2.77527 3.52851 3.55861 3.66319 3.91284 4.00011 4.05766 4.32294 4.35352 4.40955 4.48582 4.62666 4.72730 4.74023 4.81694 4.84924 4.87791 4.89665 5.02915 5.05811 5.10393 5.22801 5.27520 5.28148 5.29509 5.36586 5.65943 5.82369 5.92741 6.08562 6.33556 6.34207 6.53229 6.64201 6.90534 6.93916 7.08517 8.39574 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.025190 B = 0.002677 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.275243 B =10456.789096 C =11110.219312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.077 3.923 3 N -0.507 5.507 4 C 0.236 3.764 5 C 0.000 4.000 6 C -0.149 4.149 7 C -0.149 4.149 8 O -0.186 6.186 9 C -0.134 4.134 10 C 0.595 3.405 11 O -0.533 6.533 12 N -0.629 5.629 13 C 0.010 3.990 14 C -0.113 4.113 15 C -0.159 4.159 16 C 0.071 3.929 17 C -0.493 4.493 18 H 0.075 0.925 19 C 0.027 3.973 20 N -0.839 5.839 21 Si 0.989 3.011 22 H -0.260 1.260 23 H -0.263 1.263 24 H -0.270 1.270 25 C -0.219 4.219 26 C -0.091 4.091 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.132 0.868 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.104 0.896 36 H 0.058 0.942 37 H 0.416 0.584 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.285 0.715 41 H 0.101 0.899 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.395 19.007 -3.108 21.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.047 4.047 3 N -0.236 5.236 4 C 0.030 3.970 5 C -0.019 4.019 6 C -0.207 4.207 7 C -0.206 4.206 8 O -0.073 6.073 9 C -0.189 4.189 10 C 0.383 3.617 11 O -0.413 6.413 12 N -0.272 5.272 13 C -0.083 4.083 14 C -0.133 4.133 15 C -0.179 4.179 16 C 0.069 3.931 17 C -0.523 4.523 18 H 0.093 0.907 19 C -0.185 4.185 20 N -0.466 5.466 21 Si 0.810 3.190 22 H -0.183 1.183 23 H -0.188 1.188 24 H -0.195 1.195 25 C -0.238 4.238 26 C -0.111 4.111 27 H 0.106 0.894 28 H 0.114 0.886 29 H 0.101 0.899 30 H 0.149 0.851 31 H 0.077 0.923 32 H 0.123 0.877 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.122 0.878 36 H 0.077 0.923 37 H 0.253 0.747 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.096 0.904 41 H 0.119 0.881 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.535 19.365 -2.864 20.975 hybrid contribution 0.116 -1.508 0.252 1.534 sum 7.651 17.856 -2.611 19.601 Atomic orbital electron populations 1.20416 0.84339 1.04570 1.04221 1.22399 0.99208 0.86430 0.96620 1.70392 1.01019 1.30820 1.21388 1.27612 0.96257 0.79214 0.93882 1.20225 0.86617 0.95825 0.99271 1.21938 1.00326 1.03526 0.94908 1.21930 1.00410 1.03539 0.94747 1.84410 1.28832 1.24358 1.69737 1.22603 0.82123 0.95392 1.18785 1.16534 0.85705 0.81868 0.77637 1.90829 1.16842 1.81934 1.51653 1.42699 1.10178 1.03903 1.70439 1.17276 0.99971 0.83079 1.07982 1.20531 1.00090 0.93621 0.99099 1.21167 0.97273 0.95314 1.04118 1.18070 0.90546 0.93821 0.90667 1.19778 1.34494 0.96578 1.01493 0.90677 1.26764 0.93297 1.03882 0.94539 1.69829 1.31364 1.39145 1.06273 0.85041 0.78786 0.76035 0.79105 1.18313 1.18751 1.19462 1.20941 1.00787 0.93214 1.08905 1.20524 0.96210 0.95381 0.98936 0.89389 0.88611 0.89867 0.85066 0.92286 0.87747 0.92613 0.92447 0.87780 0.92252 0.74720 0.85994 0.86148 0.90388 0.88079 0.86974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.03 9.87 71.24 0.70 -1.33 16 2 C 0.08 2.29 7.16 41.85 0.30 2.59 16 3 N -0.51 -13.62 11.26 -291.02 -3.28 -16.90 16 4 C 0.24 5.37 6.82 88.29 0.60 5.97 16 5 C 0.00 0.00 3.39 -11.54 -0.04 -0.04 16 6 C -0.15 -1.56 9.18 71.99 0.66 -0.90 16 7 C -0.15 -1.49 9.17 71.98 0.66 -0.83 16 8 O -0.19 -4.95 10.58 -7.18 -0.08 -5.02 16 9 C -0.13 -4.23 7.18 24.04 0.17 -4.06 16 10 C 0.59 22.05 7.62 86.44 0.66 22.70 16 11 O -0.53 -22.67 12.21 -4.35 -0.05 -22.72 16 12 N -0.63 -22.82 5.29 -306.70 -1.62 -24.45 16 13 C 0.01 0.44 6.30 38.61 0.24 0.69 16 14 C -0.11 -5.14 9.90 22.14 0.22 -4.92 16 15 C -0.16 -8.25 8.61 22.48 0.19 -8.06 16 16 C 0.07 3.90 5.55 -21.28 -0.12 3.79 16 17 C -0.49 -26.78 9.02 23.38 0.21 -26.57 16 18 H 0.08 3.94 7.85 -2.91 -0.02 3.92 16 19 C 0.03 1.39 5.42 85.24 0.46 1.86 16 20 N -0.84 -43.88 10.60 21.82 0.23 -43.64 16 21 Si 0.99 38.76 29.56 68.60 2.03 40.78 16 22 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 23 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 24 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 25 C -0.22 -11.24 9.74 22.48 0.22 -11.02 16 26 C -0.09 -4.35 8.61 22.14 0.19 -4.16 16 27 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 28 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.08 2.41 6.48 -2.39 -0.02 2.40 16 30 H 0.13 1.31 8.14 -2.39 -0.02 1.30 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 34 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.42 12.30 8.61 -92.71 -0.80 11.50 16 38 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 39 H 0.12 6.51 6.13 -2.91 -0.02 6.49 16 40 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 41 H 0.10 4.96 8.06 -2.91 -0.02 4.94 16 42 H 0.11 5.25 6.22 -2.91 -0.02 5.23 16 Total: -1.00 -65.95 357.34 2.83 -63.13 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: 0.26 Total: 33.11 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 5.34 Total: -24.30 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -4.67 Total: -84.99 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.13 Total: -27.74 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.78 kcal Total: -65.95 2.83 -63.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291975789.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.502 kcal (2) G-P(sol) polarization free energy of solvation -65.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds