Wall clock time and date at job start Tue Mar 31 2020 11:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35310 * 126.12748 * 2 1 4 4 C 1.50702 * 126.04367 * 0.02562 * 3 2 1 5 5 C 1.50696 * 109.47456 * 84.99596 * 4 3 2 6 6 O 1.20837 * 119.99677 * 0.02562 * 5 4 3 7 7 O 1.34228 * 120.00309 * 180.02562 * 5 4 3 8 8 C 1.45203 * 116.99873 * 180.02562 * 7 5 4 9 9 C 1.50706 * 109.46748 * 180.02562 * 8 7 5 10 10 C 1.38632 * 119.74447 * 269.72512 * 9 8 7 11 11 C 1.37617 * 120.24259 * 179.72332 * 10 9 8 12 12 C 1.40723 * 119.74450 * 0.57032 * 11 10 9 13 13 C 1.41398 * 120.23981 * 179.68073 * 12 11 10 14 14 H 1.08005 * 119.99550 * 204.40770 * 13 12 11 15 15 C 1.39939 * 120.00283 * 24.41289 * 13 12 11 16 16 N 1.30820 * 120.00244 * 17.84078 * 15 13 12 17 17 Si 1.86804 * 120.00028 * 197.84457 * 15 13 12 18 18 H 1.48498 * 109.47075 * 59.99556 * 17 15 13 19 19 H 1.48499 * 109.46991 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47231 * 299.99662 * 17 15 13 21 21 C 1.40709 * 119.51285 * 359.70769 * 12 11 10 22 22 C 1.37616 * 119.74556 * 359.97438 * 21 12 11 23 23 C 1.39871 * 107.92305 * 180.28497 * 3 2 1 24 24 N 1.30845 * 108.19661 * 359.55509 * 23 3 2 25 25 N 1.34953 * 126.12443 * 180.02562 * 2 1 3 26 26 C 1.46496 * 126.04047 * 359.95798 * 25 2 1 27 27 H 1.09003 * 109.47182 * 89.99838 * 1 2 3 28 28 H 1.08997 * 109.47152 * 209.99771 * 1 2 3 29 29 H 1.09003 * 109.47023 * 330.00319 * 1 2 3 30 30 H 1.09006 * 109.46707 * 325.00092 * 4 3 2 31 31 H 1.08997 * 109.47313 * 205.00228 * 4 3 2 32 32 H 1.08995 * 109.46956 * 60.00251 * 8 7 5 33 33 H 1.09002 * 109.47127 * 299.99807 * 8 7 5 34 34 H 1.07995 * 119.87943 * 359.97438 * 10 9 8 35 35 H 1.07998 * 120.12987 * 180.28328 * 11 10 9 36 36 H 0.96997 * 120.00535 * 180.02562 * 16 15 13 37 37 H 1.07994 * 120.12670 * 179.97438 * 21 12 11 38 38 H 1.07994 * 119.87962 * 180.02562 * 22 21 12 39 39 H 1.07995 * 125.90450 * 179.74183 * 23 3 2 40 40 H 1.08997 * 109.47286 * 89.99874 * 26 25 2 41 41 H 1.09001 * 109.47338 * 210.00351 * 26 25 2 42 42 H 1.09004 * 109.47038 * 330.00157 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 1.8434 2.5276 0.0005 5 6 1.5721 2.9675 1.4161 6 8 1.7370 2.1954 2.3308 7 8 1.1472 4.2170 1.6609 8 6 0.9067 4.5716 3.0482 9 6 0.4381 6.0018 3.1272 10 6 1.3651 7.0222 3.2728 11 6 0.9490 8.3322 3.3402 12 6 -0.4241 8.6330 3.2729 13 6 -0.8637 9.9748 3.3480 14 1 -1.8646 10.1969 3.6877 15 6 -0.0020 11.0150 2.9820 16 7 1.0561 10.7628 2.2552 17 14 -0.3626 12.7636 3.5315 18 1 -0.3852 12.8215 5.0152 19 1 0.6936 13.6718 3.0171 20 1 -1.6827 13.1874 2.9994 21 6 -1.3563 7.5886 3.1310 22 6 -0.9171 6.2864 3.0590 23 6 3.6334 0.6560 -0.0066 24 7 3.6333 -0.6525 -0.0008 25 7 2.3026 -1.0901 -0.0005 26 6 1.8539 -2.4846 -0.0002 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 0.9305 2.6158 -0.5886 31 1 2.6185 3.1587 -0.4339 32 1 1.8295 4.4593 3.6172 33 1 0.1416 3.9155 3.4635 34 1 2.4179 6.7886 3.3294 35 1 1.6730 9.1261 3.4490 36 1 1.6535 11.4837 2.0019 37 1 -2.4124 7.8081 3.0787 38 1 -1.6306 5.4832 2.9496 39 1 4.5083 1.2891 -0.0122 40 1 1.7420 -2.8305 -1.0278 41 1 2.5901 -3.1031 0.5132 42 1 0.8957 -2.5579 0.5142 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292269017.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:19 Heat of formation + Delta-G solvation = -0.203536 kcal Electronic energy + Delta-G solvation = -24443.597009 eV Core-core repulsion = 20775.865509 eV Total energy + Delta-G solvation = -3667.731500 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -41.52119 -39.84843 -37.65656 -35.97869 -33.89109 -33.84268 -33.08520 -30.87369 -29.89346 -29.34818 -27.25926 -26.91316 -25.82422 -23.75342 -21.42922 -21.06723 -20.72612 -20.01275 -19.34598 -17.38894 -17.29173 -16.74803 -16.10298 -15.97272 -15.66520 -15.29043 -14.49732 -14.27642 -14.14087 -13.79481 -13.71084 -13.42753 -13.19836 -12.79422 -12.68184 -12.61347 -12.52865 -12.26778 -12.12703 -12.00239 -11.74840 -11.71108 -11.15898 -10.99383 -10.81300 -10.70309 -10.44401 -10.16188 -10.06474 -9.68234 -9.45323 -9.38768 -9.20751 -8.47044 -7.54760 -7.43442 -6.85243 -4.45149 1.68864 2.31154 2.43097 2.58769 2.67306 3.01383 3.02148 3.03508 3.08094 3.60665 3.86507 4.28767 4.44877 4.55306 4.77941 4.83137 4.90588 5.00865 5.12122 5.16457 5.23421 5.40612 5.54120 5.61655 5.64438 5.70265 5.75737 5.76758 6.01239 6.12793 6.26897 6.33201 6.50576 6.84250 6.88031 6.98277 6.99280 7.20020 7.28169 7.52994 7.56326 7.75797 7.96808 8.02907 8.20612 8.22036 8.55138 8.79808 8.88254 10.08519 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.036384 B = 0.002166 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.386335 B =12925.138107 C =13223.343094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.103 3.897 3 C -0.229 4.229 4 C -0.034 4.034 5 C 0.452 3.548 6 O -0.515 6.515 7 O -0.352 6.352 8 C 0.137 3.863 9 C -0.234 4.234 10 C -0.076 4.076 11 C -0.171 4.171 12 C 0.118 3.882 13 C -0.457 4.457 14 H 0.080 0.920 15 C 0.075 3.925 16 N -0.785 5.785 17 Si 0.910 3.090 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.265 1.265 21 C -0.231 4.231 22 C -0.064 4.064 23 C 0.067 3.933 24 N -0.301 5.301 25 N -0.375 5.375 26 C 0.102 3.898 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.283 0.717 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.183 0.817 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.573 -17.453 -6.294 18.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.024 4.024 3 C -0.240 4.240 4 C -0.073 4.073 5 C 0.295 3.705 6 O -0.404 6.404 7 O -0.269 6.269 8 C 0.065 3.935 9 C -0.236 4.236 10 C -0.094 4.094 11 C -0.190 4.190 12 C 0.115 3.885 13 C -0.486 4.486 14 H 0.098 0.902 15 C -0.144 4.144 16 N -0.410 5.410 17 Si 0.734 3.266 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.189 1.189 21 C -0.250 4.250 22 C -0.083 4.083 23 C -0.119 4.119 24 N -0.121 5.121 25 N -0.158 5.158 26 C -0.040 4.040 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.125 0.875 31 H 0.130 0.870 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.138 0.862 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.200 0.800 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.491 -18.762 -6.106 19.787 hybrid contribution -0.503 1.456 0.311 1.571 sum 0.988 -17.306 -5.795 18.277 Atomic orbital electron populations 1.20492 0.87349 1.04179 1.03257 1.20785 0.94434 0.87045 1.00179 1.19176 0.92744 0.93760 1.18304 1.19533 1.04209 0.92129 0.91448 1.23758 0.73737 0.80631 0.92410 1.90623 1.48459 1.54352 1.46945 1.86721 1.76225 1.30272 1.33648 1.21680 0.99522 0.94481 0.77843 1.18697 0.93709 0.91421 1.19739 1.20543 0.96548 0.93218 0.99138 1.21298 0.96611 0.94437 1.06635 1.17679 0.91626 0.92681 0.86492 1.19636 0.99955 0.90528 1.38456 0.90235 1.25966 0.94068 1.01881 0.92486 1.69816 1.11412 1.35345 1.24391 0.86331 0.79168 0.80751 0.80303 1.18728 1.20246 1.18906 1.20954 0.98056 0.92525 1.13472 1.20381 0.93806 0.95686 0.98396 1.23720 0.97467 0.92049 0.98704 1.77345 0.96447 1.12867 1.25449 1.48319 1.03996 1.05839 1.57598 1.21815 1.01065 0.77920 1.03168 0.89895 0.91001 0.89611 0.87530 0.87015 0.92196 0.92323 0.89318 0.86247 0.90579 0.88756 0.89353 0.79987 0.90814 0.89312 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.77 9.80 36.01 0.35 -0.42 16 2 C 0.10 1.18 6.93 -82.26 -0.57 0.61 16 3 C -0.23 -2.84 4.59 -105.05 -0.48 -3.32 16 4 C -0.03 -0.40 5.85 -29.04 -0.17 -0.57 16 5 C 0.45 7.21 7.95 36.00 0.29 7.49 16 6 O -0.51 -9.53 15.78 -18.76 -0.30 -9.83 16 7 O -0.35 -6.44 10.20 -39.25 -0.40 -6.84 16 8 C 0.14 2.62 5.58 36.01 0.20 2.82 16 9 C -0.23 -5.17 5.54 -104.33 -0.58 -5.75 16 10 C -0.08 -1.77 9.67 -39.66 -0.38 -2.15 16 11 C -0.17 -4.37 8.70 -38.87 -0.34 -4.71 16 12 C 0.12 3.09 5.58 -106.82 -0.60 2.49 16 13 C -0.46 -11.81 9.05 -37.74 -0.34 -12.15 16 14 H 0.08 1.96 7.91 -52.48 -0.41 1.55 16 15 C 0.08 1.83 5.14 -17.35 -0.09 1.74 16 16 N -0.79 -19.79 10.95 55.55 0.61 -19.18 16 17 Si 0.91 18.10 29.60 -169.99 -5.03 13.07 16 18 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 19 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 20 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 21 C -0.23 -5.56 9.80 -38.88 -0.38 -5.95 16 22 C -0.06 -1.43 9.67 -39.66 -0.38 -1.81 16 23 C 0.07 0.84 11.96 -17.36 -0.21 0.63 16 24 N -0.30 -4.06 12.58 30.63 0.39 -3.67 16 25 N -0.38 -4.28 4.01 -63.89 -0.26 -4.54 16 26 C 0.10 0.68 11.27 59.84 0.67 1.36 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.47 7.08 -51.93 -0.37 0.10 16 29 H 0.09 0.78 7.89 -51.93 -0.41 0.37 16 30 H 0.11 1.03 8.01 -51.93 -0.42 0.61 16 31 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 33 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 34 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 35 H 0.12 3.14 6.15 -52.49 -0.32 2.81 16 36 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 37 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 38 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 39 H 0.18 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.09 0.40 7.05 -51.93 -0.37 0.04 16 LS Contribution 364.86 15.07 5.50 5.50 Total: -1.00 -31.91 364.86 -8.15 -40.06 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -5.65 Total: 5.13 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -3.01 Total: -19.68 kcal Atomic # 7 Polarization: -28.14 SS G_CDS: 0.74 Total: -27.40 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.70 Total: -16.67 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.91 -8.15 -40.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292269017.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.856 kcal (2) G-P(sol) polarization free energy of solvation -31.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds