Wall clock time and date at job start Tue Mar 31 2020 11:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35310 * 126.12748 * 2 1 4 4 C 1.50702 * 126.04367 * 0.02562 * 3 2 1 5 5 C 1.50696 * 109.47456 * 84.99596 * 4 3 2 6 6 O 1.20837 * 119.99677 * 0.02562 * 5 4 3 7 7 O 1.34228 * 120.00309 * 180.02562 * 5 4 3 8 8 C 1.45203 * 116.99873 * 180.02562 * 7 5 4 9 9 C 1.50706 * 109.46748 * 180.02562 * 8 7 5 10 10 C 1.38632 * 119.74447 * 269.72512 * 9 8 7 11 11 C 1.37617 * 120.24259 * 179.72332 * 10 9 8 12 12 C 1.40723 * 119.74450 * 0.57032 * 11 10 9 13 13 C 1.41398 * 120.23981 * 179.68073 * 12 11 10 14 14 H 1.08005 * 119.99550 * 204.40770 * 13 12 11 15 15 C 1.39939 * 120.00283 * 24.41289 * 13 12 11 16 16 N 1.30820 * 120.00244 * 17.84078 * 15 13 12 17 17 Si 1.86804 * 120.00028 * 197.84457 * 15 13 12 18 18 H 1.48498 * 109.47075 * 59.99556 * 17 15 13 19 19 H 1.48499 * 109.46991 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47231 * 299.99662 * 17 15 13 21 21 C 1.40709 * 119.51285 * 359.70769 * 12 11 10 22 22 C 1.37616 * 119.74556 * 359.97438 * 21 12 11 23 23 C 1.39871 * 107.92305 * 180.28497 * 3 2 1 24 24 N 1.30845 * 108.19661 * 359.55509 * 23 3 2 25 25 N 1.34953 * 126.12443 * 180.02562 * 2 1 3 26 26 C 1.46496 * 126.04047 * 359.95798 * 25 2 1 27 27 H 1.09003 * 109.47182 * 89.99838 * 1 2 3 28 28 H 1.08997 * 109.47152 * 209.99771 * 1 2 3 29 29 H 1.09003 * 109.47023 * 330.00319 * 1 2 3 30 30 H 1.09006 * 109.46707 * 325.00092 * 4 3 2 31 31 H 1.08997 * 109.47313 * 205.00228 * 4 3 2 32 32 H 1.08995 * 109.46956 * 60.00251 * 8 7 5 33 33 H 1.09002 * 109.47127 * 299.99807 * 8 7 5 34 34 H 1.07995 * 119.87943 * 359.97438 * 10 9 8 35 35 H 1.07998 * 120.12987 * 180.28328 * 11 10 9 36 36 H 0.96997 * 120.00535 * 180.02562 * 16 15 13 37 37 H 1.07994 * 120.12670 * 179.97438 * 21 12 11 38 38 H 1.07994 * 119.87962 * 180.02562 * 22 21 12 39 39 H 1.07995 * 125.90450 * 179.74183 * 23 3 2 40 40 H 1.08997 * 109.47286 * 89.99874 * 26 25 2 41 41 H 1.09001 * 109.47338 * 210.00351 * 26 25 2 42 42 H 1.09004 * 109.47038 * 330.00157 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 1.8434 2.5276 0.0005 5 6 1.5721 2.9675 1.4161 6 8 1.7370 2.1954 2.3308 7 8 1.1472 4.2170 1.6609 8 6 0.9067 4.5716 3.0482 9 6 0.4381 6.0018 3.1272 10 6 1.3651 7.0222 3.2728 11 6 0.9490 8.3322 3.3402 12 6 -0.4241 8.6330 3.2729 13 6 -0.8637 9.9748 3.3480 14 1 -1.8646 10.1969 3.6877 15 6 -0.0020 11.0150 2.9820 16 7 1.0561 10.7628 2.2552 17 14 -0.3626 12.7636 3.5315 18 1 -0.3852 12.8215 5.0152 19 1 0.6936 13.6718 3.0171 20 1 -1.6827 13.1874 2.9994 21 6 -1.3563 7.5886 3.1310 22 6 -0.9171 6.2864 3.0590 23 6 3.6334 0.6560 -0.0066 24 7 3.6333 -0.6525 -0.0008 25 7 2.3026 -1.0901 -0.0005 26 6 1.8539 -2.4846 -0.0002 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 0.9305 2.6158 -0.5886 31 1 2.6185 3.1587 -0.4339 32 1 1.8295 4.4593 3.6172 33 1 0.1416 3.9155 3.4635 34 1 2.4179 6.7886 3.3294 35 1 1.6730 9.1261 3.4490 36 1 1.6535 11.4837 2.0019 37 1 -2.4124 7.8081 3.0787 38 1 -1.6306 5.4832 2.9496 39 1 4.5083 1.2891 -0.0122 40 1 1.7420 -2.8305 -1.0278 41 1 2.5901 -3.1031 0.5132 42 1 0.8957 -2.5579 0.5142 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292269017.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:17 Heat of formation + Delta-G solvation = -16.553412 kcal Electronic energy + Delta-G solvation = -24444.305993 eV Core-core repulsion = 20775.865509 eV Total energy + Delta-G solvation = -3668.440484 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.38515 -41.17997 -39.44373 -37.41581 -35.65476 -34.68795 -33.92905 -32.58166 -31.21783 -30.77229 -28.88836 -27.61024 -26.81496 -25.41090 -22.93866 -22.56332 -21.81441 -21.62031 -20.24207 -19.24983 -18.57921 -17.73766 -17.41137 -17.27649 -16.94808 -16.48663 -15.84731 -15.54758 -15.50544 -15.25038 -14.82902 -14.37751 -14.21994 -13.99225 -13.84847 -13.75167 -13.65688 -13.54060 -13.35976 -13.17614 -13.02223 -12.83976 -12.68551 -12.66346 -12.53777 -12.09273 -11.66456 -11.58468 -11.55094 -11.35276 -11.25492 -11.01753 -10.20455 -9.43307 -9.36082 -9.26905 -8.66834 -6.37677 0.73974 0.88990 1.13212 1.34110 1.39275 1.44955 1.51977 1.60669 1.67791 2.19854 2.27499 2.77948 3.56880 3.71398 3.75534 3.97202 4.09776 4.13928 4.14958 4.22925 4.34836 4.39963 4.42289 4.50629 4.57808 4.62311 4.62971 4.71562 4.74538 4.93812 5.02827 5.03090 5.13579 5.19097 5.32711 5.41618 5.59134 5.67199 5.70148 5.91360 6.07413 6.11815 6.17143 6.33931 6.66264 6.70126 6.90271 6.91707 6.99482 8.29602 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.036384 B = 0.002166 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.386335 B =12925.138107 C =13223.343094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.101 3.899 3 C -0.254 4.254 4 C -0.025 4.025 5 C 0.455 3.545 6 O -0.542 6.542 7 O -0.362 6.362 8 C 0.142 3.858 9 C -0.228 4.228 10 C -0.082 4.082 11 C -0.194 4.194 12 C 0.086 3.914 13 C -0.493 4.493 14 H 0.080 0.920 15 C 0.034 3.966 16 N -0.818 5.818 17 Si 0.984 3.016 18 H -0.261 1.261 19 H -0.268 1.268 20 H -0.258 1.258 21 C -0.245 4.245 22 C -0.065 4.065 23 C 0.053 3.947 24 N -0.335 5.335 25 N -0.379 5.379 26 C 0.091 3.909 27 H 0.107 0.893 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.290 0.710 37 H 0.103 0.897 38 H 0.120 0.880 39 H 0.197 0.803 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.344 -18.536 -7.005 19.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.028 4.028 3 C -0.265 4.265 4 C -0.063 4.063 5 C 0.300 3.700 6 O -0.432 6.432 7 O -0.280 6.280 8 C 0.070 3.930 9 C -0.230 4.230 10 C -0.100 4.100 11 C -0.214 4.214 12 C 0.084 3.916 13 C -0.522 4.522 14 H 0.098 0.902 15 C -0.182 4.182 16 N -0.443 5.443 17 Si 0.805 3.195 18 H -0.185 1.185 19 H -0.192 1.192 20 H -0.182 1.182 21 C -0.264 4.264 22 C -0.083 4.083 23 C -0.132 4.132 24 N -0.156 5.156 25 N -0.161 5.161 26 C -0.049 4.049 27 H 0.125 0.875 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.149 0.851 31 H 0.148 0.852 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.137 0.863 39 H 0.214 0.786 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.577 -19.881 -6.829 21.029 hybrid contribution -0.201 1.551 0.499 1.642 sum 0.376 -18.330 -6.330 19.396 Atomic orbital electron populations 1.20610 0.85082 1.04556 1.04906 1.21335 0.95902 0.86874 0.98659 1.19366 0.92906 0.94336 1.19887 1.19628 1.05930 0.92081 0.88648 1.24569 0.72338 0.79264 0.93833 1.90614 1.49644 1.54749 1.48207 1.86690 1.76809 1.31873 1.32578 1.21488 1.00006 0.92775 0.78776 1.19009 0.93576 0.92722 1.17664 1.20776 0.97819 0.92806 0.98628 1.21271 0.96428 0.95097 1.08594 1.18045 0.92342 0.93730 0.87491 1.19896 1.00694 0.91358 1.40256 0.90183 1.26824 0.93569 1.05920 0.91857 1.69866 1.12347 1.36965 1.25127 0.85218 0.79330 0.75312 0.79676 1.18510 1.19181 1.18184 1.21178 0.98364 0.93104 1.13772 1.20707 0.94598 0.95802 0.97171 1.24086 0.98425 0.92188 0.98469 1.77272 0.98144 1.13437 1.26796 1.48702 1.03364 1.07351 1.56718 1.22182 1.02059 0.75874 1.04811 0.87505 0.89265 0.90555 0.85081 0.85164 0.91950 0.91058 0.87738 0.87836 0.89884 0.87841 0.86254 0.78609 0.88935 0.89227 0.87333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.25 9.80 71.24 0.70 -0.55 16 2 C 0.10 2.10 6.93 41.40 0.29 2.39 16 3 C -0.25 -5.89 4.59 -20.14 -0.09 -5.99 16 4 C -0.02 -0.52 5.85 29.10 0.17 -0.35 16 5 C 0.46 13.71 7.95 71.23 0.57 14.27 16 6 O -0.54 -19.34 15.78 21.93 0.35 -18.99 16 7 O -0.36 -12.60 10.20 -51.40 -0.52 -13.12 16 8 C 0.14 5.21 5.58 71.24 0.40 5.61 16 9 C -0.23 -9.86 5.54 -19.67 -0.11 -9.97 16 10 C -0.08 -3.84 9.67 22.22 0.21 -3.62 16 11 C -0.19 -10.25 8.70 22.73 0.20 -10.05 16 12 C 0.09 4.64 5.58 -21.29 -0.12 4.52 16 13 C -0.49 -26.18 9.05 23.46 0.21 -25.97 16 14 H 0.08 4.06 7.91 -2.91 -0.02 4.03 16 15 C 0.03 1.70 5.14 85.26 0.44 2.14 16 16 N -0.82 -42.19 10.95 21.82 0.24 -41.95 16 17 Si 0.98 37.29 29.60 68.60 2.03 39.32 16 18 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 19 H -0.27 -9.58 7.11 99.48 0.71 -8.88 16 20 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 21 C -0.24 -11.86 9.80 22.73 0.22 -11.64 16 22 C -0.06 -2.80 9.67 22.22 0.21 -2.59 16 23 C 0.05 1.31 11.96 85.24 1.02 2.33 16 24 N -0.34 -8.83 12.58 -57.02 -0.72 -9.55 16 25 N -0.38 -8.04 4.01 -356.04 -1.43 -9.47 16 26 C 0.09 1.02 11.27 127.77 1.44 2.46 16 27 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.09 0.87 7.08 -2.39 -0.02 0.85 16 29 H 0.08 1.20 7.89 -2.39 -0.02 1.18 16 30 H 0.13 2.13 8.01 -2.38 -0.02 2.11 16 31 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.06 2.25 8.07 -2.39 -0.02 2.23 16 33 H 0.07 2.43 8.07 -2.39 -0.02 2.41 16 34 H 0.10 4.44 8.06 -2.91 -0.02 4.41 16 35 H 0.10 5.68 6.15 -2.91 -0.02 5.66 16 36 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 37 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 38 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 39 H 0.20 3.79 8.06 -2.91 -0.02 3.77 16 40 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.11 0.70 7.05 -2.38 -0.02 0.69 16 Total: -1.00 -70.18 364.86 6.73 -63.45 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 1.03 Total: 27.33 kcal Atomic # 6 Polarization: -42.76 SS G_CDS: 5.76 Total: -37.00 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: -1.91 Total: -60.98 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.18 Total: -32.12 kcal Atomic # 14 Polarization: 37.29 SS G_CDS: 2.03 Total: 39.32 kcal Total: -70.18 6.73 -63.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292269017.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.893 kcal (2) G-P(sol) polarization free energy of solvation -70.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds