Wall clock time and date at job start Tue Mar 31 2020 11:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41380 * 126.58227 * 2 1 4 4 C 1.34509 * 106.84097 * 179.97438 * 3 2 1 5 5 O 1.34299 * 108.42164 * 0.02562 * 4 3 2 6 6 C 1.34303 * 109.47751 * 359.76879 * 5 4 3 7 7 C 1.50704 * 125.79123 * 180.23998 * 6 5 4 8 8 N 1.46499 * 109.46818 * 270.16387 * 7 6 5 9 9 C 1.46506 * 120.00044 * 90.00297 * 8 7 6 10 10 C 1.34774 * 120.00315 * 269.99869 * 8 7 6 11 11 O 1.21583 * 119.99707 * 0.02562 * 10 8 7 12 12 N 1.34773 * 120.00369 * 180.02562 * 10 8 7 13 13 C 1.39242 * 120.00128 * 174.87478 * 12 10 8 14 14 C 1.39478 * 119.83242 * 325.29927 * 13 12 10 15 15 C 1.36372 * 120.17215 * 179.76400 * 14 13 12 16 16 C 1.40875 * 119.82443 * 0.53782 * 15 14 13 17 17 C 1.41162 * 120.16135 * 179.69931 * 16 15 14 18 18 H 1.07999 * 119.99375 * 205.36426 * 17 16 15 19 19 C 1.39892 * 120.00064 * 25.36389 * 17 16 15 20 20 N 1.30881 * 120.00283 * 16.83023 * 19 17 16 21 21 Si 1.86799 * 119.99732 * 196.82641 * 19 17 16 22 22 H 1.48501 * 109.47329 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47269 * 120.00184 * 21 19 17 24 24 H 1.48502 * 109.47046 * 240.00107 * 21 19 17 25 25 C 1.40869 * 119.67178 * 359.71705 * 16 15 14 26 26 C 1.36376 * 119.82818 * 0.02562 * 25 16 15 27 27 H 1.09001 * 109.46950 * 90.02437 * 1 2 3 28 28 H 1.09003 * 109.47235 * 330.02726 * 1 2 3 29 29 H 1.08998 * 109.47460 * 210.02389 * 1 2 3 30 30 H 1.07998 * 126.57706 * 359.97438 * 3 2 1 31 31 H 1.08004 * 125.78619 * 180.02562 * 4 3 2 32 32 H 1.08997 * 109.47044 * 30.16457 * 7 6 5 33 33 H 1.08994 * 109.47117 * 150.16748 * 7 6 5 34 34 H 1.09001 * 109.47234 * 89.99581 * 9 8 7 35 35 H 1.08997 * 109.46687 * 209.99840 * 9 8 7 36 36 H 1.09002 * 109.47045 * 329.99347 * 9 8 7 37 37 H 0.96999 * 119.99914 * 354.86950 * 12 10 8 38 38 H 1.08000 * 119.91599 * 0.02562 * 14 13 12 39 39 H 1.07996 * 120.09328 * 180.25559 * 15 14 13 40 40 H 0.96995 * 120.00279 * 180.02562 * 20 19 17 41 41 H 1.08002 * 120.08165 * 179.97438 * 25 16 15 42 42 H 1.08001 * 119.91505 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6156 0.6809 0.0006 5 8 3.5847 -0.6617 0.0004 6 6 2.3086 -1.0802 0.0047 7 6 1.8521 -2.5165 0.0111 8 7 1.7049 -2.9881 -1.3680 9 6 2.8404 -3.6083 -2.0552 10 6 0.5248 -2.8516 -2.0047 11 8 -0.4174 -2.3365 -1.4345 12 7 0.3892 -3.2860 -3.2732 13 6 -0.8561 -3.2429 -3.8945 14 6 -2.0124 -3.4675 -3.1475 15 6 -3.2359 -3.4222 -3.7479 16 6 -3.3295 -3.1591 -5.1287 17 6 -4.5920 -3.1169 -5.7588 18 1 -4.6754 -3.3254 -6.8152 19 6 -5.7349 -2.8051 -5.0148 20 7 -5.6173 -2.2387 -3.8409 21 14 -7.4291 -3.1972 -5.6971 22 1 -7.2902 -3.8316 -7.0326 23 1 -8.1296 -4.1291 -4.7774 24 1 -8.2142 -1.9430 -5.8236 25 6 -2.1569 -2.9386 -5.8776 26 6 -0.9407 -2.9819 -5.2621 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3634 0.8902 0.5134 29 1 -0.3634 -0.8897 0.5142 30 1 2.0367 2.1689 -0.0004 31 1 4.5060 1.2923 0.0011 32 1 2.5899 -3.1299 0.5281 33 1 0.8936 -2.5908 0.5247 34 1 2.8284 -4.6839 -1.8790 35 1 2.7673 -3.4146 -3.1254 36 1 3.7704 -3.1878 -1.6726 37 1 1.1593 -3.6285 -3.7535 38 1 -1.9388 -3.6735 -2.0899 39 1 -4.1306 -3.5922 -3.1675 40 1 -6.4097 -2.0228 -3.3249 41 1 -2.2208 -2.7367 -6.9367 42 1 -0.0408 -2.8135 -5.8349 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292769306.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:55 Heat of formation + Delta-G solvation = 19.400733 kcal Electronic energy + Delta-G solvation = -25719.143304 eV Core-core repulsion = 22052.261909 eV Total energy + Delta-G solvation = -3666.881395 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.53686 -40.01945 -37.54353 -35.48281 -34.51917 -33.93332 -32.91043 -30.94112 -29.45045 -28.92544 -28.13472 -26.63123 -25.58053 -24.27964 -21.52699 -21.32647 -20.97328 -19.73015 -19.15138 -17.95671 -17.26083 -16.97839 -16.59928 -16.09599 -15.44508 -15.20202 -14.82905 -14.23584 -13.96677 -13.80018 -13.55597 -13.11266 -12.90234 -12.74394 -12.67178 -12.65296 -12.49036 -12.21019 -12.01842 -11.81486 -11.71274 -11.46378 -11.20298 -11.10530 -10.88094 -10.47074 -9.91338 -9.82660 -9.52531 -9.47493 -9.22978 -8.72177 -8.64980 -8.28402 -7.47152 -6.93464 -6.68058 -4.23944 1.66308 2.57094 2.71332 2.98266 3.07509 3.10604 3.13677 3.16193 3.23254 3.74950 3.97379 4.34561 4.68553 4.71479 4.90715 5.00744 5.03622 5.16766 5.38094 5.52418 5.56442 5.65667 5.75429 5.87923 6.02378 6.16864 6.18668 6.31282 6.38702 6.42620 6.45903 6.76001 6.86769 6.88346 7.09764 7.13811 7.21239 7.33084 7.36083 7.66191 7.85486 8.05433 8.10641 8.31007 8.47831 8.68362 8.93990 8.96963 9.15303 10.24625 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.021347 B = 0.003135 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.362599 B = 8928.886022 C = 9604.094363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.142 4.142 3 C -0.215 4.215 4 C -0.044 4.044 5 O -0.178 6.178 6 C -0.049 4.049 7 C 0.220 3.780 8 N -0.635 5.635 9 C 0.081 3.919 10 C 0.695 3.305 11 O -0.562 6.562 12 N -0.666 5.666 13 C 0.015 3.985 14 C -0.085 4.085 15 C -0.153 4.153 16 C 0.104 3.896 17 C -0.461 4.461 18 H 0.077 0.923 19 C 0.074 3.926 20 N -0.790 5.790 21 Si 0.907 3.093 22 H -0.261 1.261 23 H -0.272 1.272 24 H -0.275 1.275 25 C -0.214 4.214 26 C -0.108 4.108 27 H 0.078 0.922 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.145 0.855 31 H 0.199 0.801 32 H 0.088 0.912 33 H 0.115 0.885 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.389 0.611 38 H 0.102 0.898 39 H 0.119 0.881 40 H 0.280 0.720 41 H 0.094 0.906 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.953 0.485 7.270 17.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.145 4.145 3 C -0.234 4.234 4 C -0.112 4.112 5 O -0.075 6.075 6 C -0.100 4.100 7 C 0.097 3.903 8 N -0.374 5.374 9 C -0.062 4.062 10 C 0.398 3.602 11 O -0.438 6.438 12 N -0.313 5.313 13 C -0.077 4.077 14 C -0.105 4.105 15 C -0.173 4.173 16 C 0.102 3.898 17 C -0.490 4.490 18 H 0.095 0.905 19 C -0.144 4.144 20 N -0.415 5.415 21 Si 0.731 3.269 22 H -0.185 1.185 23 H -0.198 1.198 24 H -0.201 1.201 25 C -0.234 4.234 26 C -0.128 4.128 27 H 0.097 0.903 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.163 0.837 31 H 0.216 0.784 32 H 0.107 0.893 33 H 0.133 0.867 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.224 0.776 38 H 0.120 0.880 39 H 0.137 0.863 40 H 0.091 0.909 41 H 0.113 0.887 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 15.349 0.731 7.886 17.272 hybrid contribution -0.221 0.238 -0.611 0.692 sum 15.128 0.970 7.275 16.815 Atomic orbital electron populations 1.20226 0.88046 1.01653 1.03497 1.20483 0.97846 0.91702 1.04435 1.21795 0.92799 0.99972 1.08847 1.23905 0.99509 0.80941 1.06867 1.83965 1.29153 1.22518 1.71836 1.22822 0.80634 0.97423 1.09104 1.19523 1.02477 0.85391 0.82947 1.47115 1.11148 1.64796 1.14359 1.21703 0.89365 0.97767 0.97412 1.15949 0.82642 0.79464 0.82179 1.90931 1.38240 1.48393 1.66250 1.42274 1.10851 1.65811 1.12376 1.16976 0.82990 1.16011 0.91759 1.20412 0.91778 1.00142 0.98166 1.20978 0.95794 1.04845 0.95690 1.17656 0.92296 0.87921 0.91969 1.19549 0.91116 1.41776 0.96590 0.90472 1.25915 1.01502 0.92474 0.94467 1.69869 1.31885 1.28428 1.11358 0.86294 0.81426 0.78973 0.80193 1.18464 1.19755 1.20060 1.20528 0.92184 1.12011 0.98702 1.20011 0.96820 1.03176 0.92821 0.90300 0.92870 0.90916 0.83732 0.78422 0.89326 0.86694 0.92489 0.91614 0.91064 0.77596 0.88019 0.86283 0.90932 0.88744 0.89454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.24 8.71 36.01 0.31 -0.92 16 2 C -0.14 -2.13 6.16 -104.74 -0.65 -2.77 16 3 C -0.21 -2.75 10.87 -39.71 -0.43 -3.18 16 4 C -0.04 -0.49 12.09 29.41 0.36 -0.13 16 5 O -0.18 -2.28 10.65 5.72 0.06 -2.22 16 6 C -0.05 -0.68 6.90 -35.62 -0.25 -0.92 16 7 C 0.22 2.74 5.73 -5.19 -0.03 2.71 16 8 N -0.64 -8.69 2.86 -188.74 -0.54 -9.23 16 9 C 0.08 0.79 10.25 59.85 0.61 1.40 16 10 C 0.70 12.58 8.00 -86.92 -0.70 11.89 16 11 O -0.56 -12.03 10.50 5.29 0.06 -11.97 16 12 N -0.67 -12.07 5.18 -14.10 -0.07 -12.14 16 13 C 0.02 0.34 6.27 -83.57 -0.52 -0.18 16 14 C -0.08 -2.10 8.57 -39.79 -0.34 -2.44 16 15 C -0.15 -4.10 8.63 -39.26 -0.34 -4.44 16 16 C 0.10 2.81 5.57 -106.79 -0.59 2.21 16 17 C -0.46 -12.31 9.04 -37.85 -0.34 -12.65 16 18 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 19 C 0.07 1.89 5.15 -17.34 -0.09 1.80 16 20 N -0.79 -20.97 10.95 55.54 0.61 -20.36 16 21 Si 0.91 18.87 29.59 -169.99 -5.03 13.84 16 22 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 24 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 25 C -0.21 -5.24 9.74 -39.26 -0.38 -5.62 16 26 C -0.11 -2.40 9.90 -39.79 -0.39 -2.79 16 27 H 0.08 1.50 7.30 -51.93 -0.38 1.13 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.18 6.50 -51.93 -0.34 0.84 16 30 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.20 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.09 0.82 8.07 -51.93 -0.42 0.40 16 33 H 0.12 1.53 6.41 -51.93 -0.33 1.20 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.61 6.29 -51.93 -0.33 0.28 16 36 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 37 H 0.39 5.67 6.51 -40.82 -0.27 5.40 16 38 H 0.10 2.52 6.48 -52.49 -0.34 2.18 16 39 H 0.12 3.31 6.18 -52.49 -0.32 2.99 16 40 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 41 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 42 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 349.14 15.07 5.26 5.26 Total: -1.00 -31.58 349.14 -8.66 -40.24 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -5.23 Total: 12.64 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -3.77 Total: -16.05 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.00 Total: -41.73 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: 0.12 Total: -14.20 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.58 -8.66 -40.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292769306.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.641 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds