Wall clock time and date at job start Tue Mar 31 2020 11:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41380 * 126.58227 * 2 1 4 4 C 1.34509 * 106.84097 * 179.97438 * 3 2 1 5 5 O 1.34299 * 108.42164 * 0.02562 * 4 3 2 6 6 C 1.34303 * 109.47751 * 359.76879 * 5 4 3 7 7 C 1.50704 * 125.79123 * 180.23998 * 6 5 4 8 8 N 1.46499 * 109.46818 * 270.16387 * 7 6 5 9 9 C 1.46506 * 120.00044 * 90.00297 * 8 7 6 10 10 C 1.34774 * 120.00315 * 269.99869 * 8 7 6 11 11 O 1.21583 * 119.99707 * 0.02562 * 10 8 7 12 12 N 1.34773 * 120.00369 * 180.02562 * 10 8 7 13 13 C 1.39242 * 120.00128 * 174.87478 * 12 10 8 14 14 C 1.39478 * 119.83242 * 325.29927 * 13 12 10 15 15 C 1.36372 * 120.17215 * 179.76400 * 14 13 12 16 16 C 1.40875 * 119.82443 * 0.53782 * 15 14 13 17 17 C 1.41162 * 120.16135 * 179.69931 * 16 15 14 18 18 H 1.07999 * 119.99375 * 205.36426 * 17 16 15 19 19 C 1.39892 * 120.00064 * 25.36389 * 17 16 15 20 20 N 1.30881 * 120.00283 * 16.83023 * 19 17 16 21 21 Si 1.86799 * 119.99732 * 196.82641 * 19 17 16 22 22 H 1.48501 * 109.47329 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47269 * 120.00184 * 21 19 17 24 24 H 1.48502 * 109.47046 * 240.00107 * 21 19 17 25 25 C 1.40869 * 119.67178 * 359.71705 * 16 15 14 26 26 C 1.36376 * 119.82818 * 0.02562 * 25 16 15 27 27 H 1.09001 * 109.46950 * 90.02437 * 1 2 3 28 28 H 1.09003 * 109.47235 * 330.02726 * 1 2 3 29 29 H 1.08998 * 109.47460 * 210.02389 * 1 2 3 30 30 H 1.07998 * 126.57706 * 359.97438 * 3 2 1 31 31 H 1.08004 * 125.78619 * 180.02562 * 4 3 2 32 32 H 1.08997 * 109.47044 * 30.16457 * 7 6 5 33 33 H 1.08994 * 109.47117 * 150.16748 * 7 6 5 34 34 H 1.09001 * 109.47234 * 89.99581 * 9 8 7 35 35 H 1.08997 * 109.46687 * 209.99840 * 9 8 7 36 36 H 1.09002 * 109.47045 * 329.99347 * 9 8 7 37 37 H 0.96999 * 119.99914 * 354.86950 * 12 10 8 38 38 H 1.08000 * 119.91599 * 0.02562 * 14 13 12 39 39 H 1.07996 * 120.09328 * 180.25559 * 15 14 13 40 40 H 0.96995 * 120.00279 * 180.02562 * 20 19 17 41 41 H 1.08002 * 120.08165 * 179.97438 * 25 16 15 42 42 H 1.08001 * 119.91505 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6156 0.6809 0.0006 5 8 3.5847 -0.6617 0.0004 6 6 2.3086 -1.0802 0.0047 7 6 1.8521 -2.5165 0.0111 8 7 1.7049 -2.9881 -1.3680 9 6 2.8404 -3.6083 -2.0552 10 6 0.5248 -2.8516 -2.0047 11 8 -0.4174 -2.3365 -1.4345 12 7 0.3892 -3.2860 -3.2732 13 6 -0.8561 -3.2429 -3.8945 14 6 -2.0124 -3.4675 -3.1475 15 6 -3.2359 -3.4222 -3.7479 16 6 -3.3295 -3.1591 -5.1287 17 6 -4.5920 -3.1169 -5.7588 18 1 -4.6754 -3.3254 -6.8152 19 6 -5.7349 -2.8051 -5.0148 20 7 -5.6173 -2.2387 -3.8409 21 14 -7.4291 -3.1972 -5.6971 22 1 -7.2902 -3.8316 -7.0326 23 1 -8.1296 -4.1291 -4.7774 24 1 -8.2142 -1.9430 -5.8236 25 6 -2.1569 -2.9386 -5.8776 26 6 -0.9407 -2.9819 -5.2621 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3634 0.8902 0.5134 29 1 -0.3634 -0.8897 0.5142 30 1 2.0367 2.1689 -0.0004 31 1 4.5060 1.2923 0.0011 32 1 2.5899 -3.1299 0.5281 33 1 0.8936 -2.5908 0.5247 34 1 2.8284 -4.6839 -1.8790 35 1 2.7673 -3.4146 -3.1254 36 1 3.7704 -3.1878 -1.6726 37 1 1.1593 -3.6285 -3.7535 38 1 -1.9388 -3.6735 -2.0899 39 1 -4.1306 -3.5922 -3.1675 40 1 -6.4097 -2.0228 -3.3249 41 1 -2.2208 -2.7367 -6.9367 42 1 -0.0408 -2.8135 -5.8349 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292769306.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:53 Heat of formation + Delta-G solvation = 1.509927 kcal Electronic energy + Delta-G solvation = -25719.919108 eV Core-core repulsion = 22052.261909 eV Total energy + Delta-G solvation = -3667.657199 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -43.52278 -41.45806 -39.30269 -36.80847 -36.15340 -35.13057 -34.59611 -32.04502 -31.37580 -30.66500 -29.28238 -27.67526 -27.05649 -25.76715 -23.18919 -22.82875 -22.35782 -21.01562 -20.45806 -19.34565 -19.15087 -18.03392 -17.93401 -17.36593 -16.97956 -16.53380 -16.15315 -15.74213 -15.43511 -15.08225 -14.97862 -14.48503 -14.40200 -14.11728 -13.92304 -13.88360 -13.64167 -13.60107 -13.48713 -13.34962 -13.22561 -12.81918 -12.73618 -12.63455 -12.36217 -12.26081 -11.71270 -11.63737 -11.22726 -10.97971 -10.55337 -10.45543 -9.85301 -9.41601 -9.32292 -8.79526 -8.56874 -6.23121 0.66208 0.89775 1.17348 1.39139 1.47644 1.54451 1.55229 1.90840 2.02600 2.22685 2.32641 2.80807 3.11815 3.76490 3.79260 3.97471 4.03245 4.19148 4.23199 4.44571 4.48862 4.50621 4.63564 4.68353 4.80737 4.84103 4.86639 4.96362 5.01549 5.10440 5.19021 5.25830 5.28236 5.33538 5.43654 5.51545 5.61526 5.67627 5.78782 6.06999 6.13914 6.17010 6.23611 6.39120 6.72022 6.96538 7.04446 7.05614 7.68999 8.37388 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.021347 B = 0.003135 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.362599 B = 8928.886022 C = 9604.094363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.174 4.174 3 C -0.239 4.239 4 C -0.024 4.024 5 O -0.177 6.177 6 C -0.053 4.053 7 C 0.217 3.783 8 N -0.626 5.626 9 C 0.074 3.926 10 C 0.689 3.311 11 O -0.602 6.602 12 N -0.660 5.660 13 C 0.032 3.968 14 C -0.096 4.096 15 C -0.176 4.176 16 C 0.072 3.928 17 C -0.495 4.495 18 H 0.080 0.920 19 C 0.030 3.970 20 N -0.830 5.830 21 Si 0.984 3.016 22 H -0.254 1.254 23 H -0.267 1.267 24 H -0.268 1.268 25 C -0.222 4.222 26 C -0.105 4.105 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.157 0.843 31 H 0.245 0.755 32 H 0.128 0.872 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.410 0.590 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.285 0.715 41 H 0.108 0.892 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.926 0.375 6.843 20.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.177 4.177 3 C -0.258 4.258 4 C -0.091 4.091 5 O -0.073 6.073 6 C -0.104 4.104 7 C 0.094 3.906 8 N -0.364 5.364 9 C -0.068 4.068 10 C 0.391 3.609 11 O -0.481 6.481 12 N -0.309 5.309 13 C -0.062 4.062 14 C -0.116 4.116 15 C -0.196 4.196 16 C 0.069 3.931 17 C -0.525 4.525 18 H 0.098 0.902 19 C -0.184 4.184 20 N -0.457 5.457 21 Si 0.805 3.195 22 H -0.177 1.177 23 H -0.191 1.191 24 H -0.193 1.193 25 C -0.242 4.242 26 C -0.125 4.125 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.175 0.825 31 H 0.261 0.739 32 H 0.146 0.854 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.249 0.751 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.096 0.904 41 H 0.126 0.874 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 18.411 0.600 7.462 19.875 hybrid contribution -0.901 0.323 -0.379 1.029 sum 17.511 0.923 7.083 18.912 Atomic orbital electron populations 1.19988 0.89650 1.01649 1.00877 1.20606 0.97217 0.93582 1.06255 1.22046 0.93400 1.00171 1.10185 1.24739 1.00361 0.80317 1.03727 1.83980 1.28245 1.23485 1.71616 1.22880 0.80976 0.97576 1.08962 1.19685 1.02872 0.85675 0.82359 1.47121 1.10659 1.63907 1.14665 1.22015 0.88389 0.98933 0.97491 1.16186 0.83614 0.79118 0.81958 1.90926 1.40232 1.49907 1.67016 1.42065 1.10000 1.66173 1.12683 1.17011 0.83966 1.13230 0.91965 1.20430 0.92376 1.00804 0.98001 1.20869 0.95793 1.06856 0.96082 1.17984 0.93675 0.89153 0.92274 1.19815 0.92107 1.43565 0.97030 0.90206 1.26825 1.05464 0.91557 0.94555 1.69952 1.33296 1.29551 1.12869 0.85139 0.75924 0.78911 0.79574 1.17722 1.19148 1.19250 1.20793 0.92357 1.11603 0.99415 1.20344 0.97617 1.01685 0.92857 0.94196 0.91719 0.92100 0.82511 0.73924 0.85389 0.88399 0.90337 0.91011 0.89001 0.75143 0.88827 0.88592 0.90408 0.87367 0.85335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.18 8.71 71.24 0.62 -1.56 16 2 C -0.17 -5.16 6.16 -19.94 -0.12 -5.29 16 3 C -0.24 -5.73 10.87 22.19 0.24 -5.49 16 4 C -0.02 -0.45 12.09 66.97 0.81 0.36 16 5 O -0.18 -3.97 10.65 -2.45 -0.03 -3.99 16 6 C -0.05 -1.38 6.90 24.83 0.17 -1.21 16 7 C 0.22 5.07 5.73 85.63 0.49 5.56 16 8 N -0.63 -15.92 2.86 -869.32 -2.48 -18.41 16 9 C 0.07 1.16 10.25 127.77 1.31 2.47 16 10 C 0.69 24.62 8.00 179.06 1.43 26.05 16 11 O -0.60 -26.70 10.50 -3.98 -0.04 -26.74 16 12 N -0.66 -22.98 5.18 -316.79 -1.64 -24.62 16 13 C 0.03 1.44 6.27 38.56 0.24 1.68 16 14 C -0.10 -4.94 8.57 22.13 0.19 -4.75 16 15 C -0.18 -9.95 8.63 22.48 0.19 -9.75 16 16 C 0.07 4.00 5.57 -21.27 -0.12 3.88 16 17 C -0.50 -27.41 9.04 23.39 0.21 -27.20 16 18 H 0.08 4.19 7.90 -2.91 -0.02 4.17 16 19 C 0.03 1.57 5.15 85.24 0.44 2.01 16 20 N -0.83 -46.22 10.95 21.82 0.24 -45.98 16 21 Si 0.98 39.58 29.59 68.60 2.03 41.61 16 22 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 23 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 24 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 25 C -0.22 -10.88 9.74 22.48 0.22 -10.66 16 26 C -0.10 -4.52 9.90 22.13 0.22 -4.30 16 27 H 0.04 1.63 7.30 -2.39 -0.02 1.61 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.06 2.12 6.50 -2.39 -0.02 2.11 16 30 H 0.16 3.22 8.06 -2.91 -0.02 3.19 16 31 H 0.24 2.07 8.06 -2.91 -0.02 2.04 16 32 H 0.13 1.96 8.07 -2.39 -0.02 1.94 16 33 H 0.10 2.64 6.41 -2.39 -0.02 2.62 16 34 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 1.06 6.29 -2.39 -0.02 1.04 16 36 H 0.09 1.13 8.07 -2.39 -0.02 1.11 16 37 H 0.41 10.75 6.51 -92.71 -0.60 10.15 16 38 H 0.09 4.90 6.48 -2.91 -0.02 4.88 16 39 H 0.10 5.76 6.18 -2.91 -0.02 5.74 16 40 H 0.29 14.43 8.30 -92.71 -0.77 13.66 16 41 H 0.11 4.90 8.06 -2.91 -0.02 4.87 16 42 H 0.13 4.46 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -73.39 349.14 5.08 -68.32 By element: Atomic # 1 Polarization: 37.56 SS G_CDS: 0.45 Total: 38.01 kcal Atomic # 6 Polarization: -34.74 SS G_CDS: 6.55 Total: -28.20 kcal Atomic # 7 Polarization: -85.12 SS G_CDS: -3.89 Total: -89.01 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.07 Total: -30.73 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Total: -73.39 5.08 -68.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292769306.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.829 kcal (2) G-P(sol) polarization free energy of solvation -73.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds