Wall clock time and date at job start Tue Mar 31 2020 11:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29933 * 125.37790 * 2 1 4 4 C 1.36067 * 108.47351 * 179.97438 * 3 2 1 5 5 C 1.47425 * 126.44626 * 179.97438 * 4 3 2 6 6 O 1.21613 * 120.00006 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99743 * 0.02562 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72398 * 7 5 4 9 9 H 1.08999 * 109.47480 * 35.27807 * 8 7 5 10 10 C 1.52999 * 109.47493 * 155.28120 * 8 7 5 11 11 C 1.50706 * 109.46603 * 295.00080 * 10 8 7 12 12 H 1.08003 * 119.99914 * 359.97438 * 11 10 8 13 13 C 1.37879 * 119.99843 * 179.97438 * 11 10 8 14 14 N 1.31512 * 120.00198 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99798 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46918 * 90.00082 * 15 13 11 17 17 H 1.48502 * 109.46722 * 209.99863 * 15 13 11 18 18 H 1.48500 * 109.47145 * 329.99897 * 15 13 11 19 19 C 1.50703 * 109.47256 * 275.27951 * 8 7 5 20 20 C 1.38242 * 119.99836 * 319.72549 * 19 8 7 21 21 C 1.38233 * 119.99852 * 179.81099 * 20 19 8 22 22 C 1.38241 * 119.99823 * 0.39897 * 21 20 19 23 23 C 1.38227 * 120.00337 * 359.85584 * 22 21 20 24 24 C 1.38234 * 120.00383 * 140.00388 * 19 8 7 25 25 C 1.36084 * 107.10479 * 0.22993 * 4 3 2 26 26 C 1.50708 * 126.52541 * 179.76737 * 25 4 3 27 27 O 1.34049 * 125.37345 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47260 * 89.99479 * 1 2 3 29 29 H 1.09003 * 109.46843 * 209.99602 * 1 2 3 30 30 H 1.08996 * 109.46884 * 329.99625 * 1 2 3 31 31 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 32 32 H 1.08998 * 109.47257 * 54.99513 * 10 8 7 33 33 H 1.08993 * 109.47436 * 175.00131 * 10 8 7 34 34 H 0.96992 * 120.00089 * 179.97438 * 14 13 11 35 35 H 1.07995 * 119.99996 * 0.02562 * 20 19 8 36 36 H 1.08000 * 119.99735 * 180.23209 * 21 20 19 37 37 H 1.08001 * 119.99396 * 179.83514 * 22 21 20 38 38 H 1.07998 * 120.00107 * 179.97438 * 23 22 21 39 39 H 1.08005 * 119.99831 * 359.97370 * 24 19 8 40 40 H 1.08999 * 109.46720 * 90.00168 * 26 25 4 41 41 H 1.08994 * 109.47317 * 209.99881 * 26 25 4 42 42 H 1.08993 * 109.46933 * 330.00786 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 0.0006 5 6 4.7440 1.5438 0.0003 6 8 5.8605 1.0617 0.0004 7 7 4.5879 2.8825 -0.0002 8 6 5.7632 3.7569 0.0056 9 1 6.5584 3.3009 -0.5842 10 6 5.3932 5.1128 -0.5990 11 6 5.0364 4.9341 -2.0523 12 1 5.0705 3.9517 -2.4999 13 6 4.6663 6.0246 -2.8104 14 7 4.6242 7.2207 -2.2653 15 14 4.2247 5.8032 -4.6119 16 1 2.7691 5.5362 -4.7355 17 1 4.5666 7.0391 -5.3609 18 1 4.9872 4.6583 -5.1714 19 6 6.2376 3.9516 1.4227 20 6 5.3192 4.1226 2.4417 21 6 5.7542 4.2972 3.7421 22 6 7.1078 4.3091 4.0224 23 6 8.0263 4.1434 3.0028 24 6 7.5912 3.9649 1.7029 25 6 3.5660 -0.6971 -0.0043 26 6 4.7802 -1.5898 -0.0105 27 8 2.2831 -1.0930 0.0005 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 3.6973 3.2670 0.0001 32 1 4.5396 5.5285 -0.0638 33 1 6.2413 5.7921 -0.5141 34 1 4.3643 7.9879 -2.7987 35 1 4.2618 4.1162 2.2223 36 1 5.0366 4.4270 4.5387 37 1 7.4477 4.4482 5.0381 38 1 9.0838 4.1531 3.2217 39 1 8.3088 3.8354 0.9062 40 1 5.0754 -1.8086 1.0156 41 1 4.5445 -2.5202 -0.5270 42 1 5.5988 -1.0861 -0.5245 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293198271.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:48 Heat of formation + Delta-G solvation = -3.421900 kcal Electronic energy + Delta-G solvation = -25779.892712 eV Core-core repulsion = 22112.021653 eV Total energy + Delta-G solvation = -3667.871059 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.36811 -39.53423 -38.31676 -35.23218 -34.82813 -33.00541 -32.68657 -31.09376 -30.43894 -30.08499 -28.78627 -26.31222 -24.84889 -23.16872 -22.26587 -21.93180 -21.44770 -20.08743 -19.69303 -17.66235 -17.02120 -16.75781 -16.12838 -15.64753 -15.48699 -14.86159 -14.51508 -14.35987 -14.11170 -14.07733 -13.75045 -13.54624 -13.07339 -12.99240 -12.82234 -12.79418 -12.66484 -12.48195 -12.32311 -12.08108 -11.52924 -11.15699 -11.11519 -10.90104 -10.70919 -10.66535 -10.57965 -10.42811 -9.75246 -9.63059 -9.25978 -8.75094 -8.51157 -8.42354 -8.35179 -8.16197 -6.05281 -4.08189 1.19797 1.80130 1.83253 2.15370 2.49380 3.30233 3.36723 3.41112 3.59876 3.68983 3.99157 4.26977 4.43560 4.65131 5.01265 5.05798 5.19920 5.28805 5.30298 5.31607 5.33331 5.34956 5.40044 5.45805 5.56727 5.62821 5.89153 5.94022 5.96349 6.04810 6.14015 6.24693 6.38126 6.46648 6.59916 6.87444 6.87930 6.91927 7.13771 7.43016 7.51810 7.53750 7.66536 7.91321 8.17142 8.29520 8.71273 8.97034 9.56493 11.05378 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.007558 B = 0.005863 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3703.625759 B = 4774.629927 C = 7287.389094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.184 3.816 3 N -0.452 5.452 4 C -0.063 4.063 5 C 0.597 3.403 6 O -0.546 6.546 7 N -0.679 5.679 8 C 0.183 3.817 9 H 0.089 0.911 10 C 0.024 3.976 11 C -0.519 4.519 12 H 0.057 0.943 13 C 0.061 3.939 14 N -0.892 5.892 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.072 4.072 20 C -0.107 4.107 21 C -0.125 4.125 22 C -0.135 4.135 23 C -0.123 4.123 24 C -0.107 4.107 25 C 0.028 3.972 26 C -0.072 4.072 27 O -0.202 6.202 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.410 0.590 32 H 0.025 0.975 33 H 0.036 0.964 34 H 0.261 0.739 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.919 -13.939 9.169 17.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.025 4.025 3 N -0.182 5.182 4 C -0.183 4.183 5 C 0.382 3.618 6 O -0.425 6.425 7 N -0.327 5.327 8 C 0.079 3.921 9 H 0.107 0.893 10 C -0.013 4.013 11 C -0.557 4.557 12 H 0.075 0.925 13 C -0.141 4.141 14 N -0.531 5.531 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.073 4.073 20 C -0.125 4.125 21 C -0.143 4.143 22 C -0.153 4.153 23 C -0.141 4.141 24 C -0.126 4.126 25 C -0.028 4.028 26 C -0.129 4.129 27 O -0.090 6.090 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.121 0.879 31 H 0.246 0.754 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.397 -13.443 9.109 16.590 hybrid contribution -0.603 -0.380 -1.012 1.238 sum -4.000 -13.823 8.097 16.512 Atomic orbital electron populations 1.20265 0.81038 1.05080 1.04807 1.26186 0.96440 0.78360 1.01475 1.70789 1.00880 1.29773 1.16753 1.21690 0.92299 0.92312 1.12033 1.16711 0.85863 0.82366 0.76866 1.90728 1.24184 1.75352 1.52225 1.45799 1.11175 1.04438 1.71255 1.20327 0.87481 0.93792 0.90462 0.89292 1.19396 0.97899 0.88447 0.95585 1.21125 1.45880 0.93977 0.94703 0.92450 1.24968 0.95484 0.95209 0.98407 1.69954 1.48018 0.98762 1.36359 0.86601 0.78759 0.77557 0.85164 1.20665 1.21208 1.19900 1.20534 0.93477 0.96863 0.96436 1.20944 0.99541 0.99567 0.92448 1.21039 0.95650 1.01157 0.96462 1.20992 0.93412 1.02187 0.98679 1.21030 0.99091 1.00958 0.93059 1.21010 0.95284 0.99738 0.96526 1.23676 0.83690 0.94635 1.00812 1.20549 0.90440 0.97467 1.04394 1.84282 1.16464 1.38018 1.70198 0.88866 0.89476 0.87893 0.75433 0.95634 0.94579 0.92896 0.86528 0.86761 0.86854 0.86594 0.86111 0.89337 0.90524 0.86828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.43 10.51 36.01 0.38 -0.05 16 2 C 0.18 2.43 8.30 -13.08 -0.11 2.32 16 3 N -0.45 -7.46 11.06 -7.65 -0.08 -7.54 16 4 C -0.06 -1.10 6.99 -83.02 -0.58 -1.68 16 5 C 0.60 11.72 7.77 -12.52 -0.10 11.62 16 6 O -0.55 -11.36 14.47 5.27 0.08 -11.28 16 7 N -0.68 -13.62 4.04 -56.01 -0.23 -13.85 16 8 C 0.18 3.89 2.11 -69.08 -0.15 3.74 16 9 H 0.09 2.01 7.44 -51.93 -0.39 1.62 16 10 C 0.02 0.59 4.49 -27.88 -0.13 0.47 16 11 C -0.52 -14.16 8.84 -34.44 -0.30 -14.46 16 12 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 15 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 C -0.07 -1.38 4.91 -104.62 -0.51 -1.89 16 20 C -0.11 -1.90 9.32 -39.58 -0.37 -2.27 16 21 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 22 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 23 C -0.12 -1.88 10.05 -39.59 -0.40 -2.28 16 24 C -0.11 -1.89 9.67 -39.58 -0.38 -2.27 16 25 C 0.03 0.41 7.44 -35.08 -0.26 0.15 16 26 C -0.07 -0.84 9.88 36.01 0.36 -0.49 16 27 O -0.20 -2.74 10.73 6.50 0.07 -2.67 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.41 8.18 8.33 -40.82 -0.34 7.84 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.12 2.03 7.73 -52.49 -0.41 1.62 16 36 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 39 H 0.12 2.01 8.04 -52.48 -0.42 1.59 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.11 1.52 6.48 -51.93 -0.34 1.18 16 LS Contribution 365.51 15.07 5.51 5.51 Total: -1.00 -32.68 365.51 -8.05 -40.72 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -5.66 Total: 8.01 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -3.44 Total: -10.16 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: 0.43 Total: -46.70 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.15 Total: -13.95 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.68 -8.05 -40.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293198271.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.301 kcal (2) G-P(sol) polarization free energy of solvation -32.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds